rna9514, rna9514 (mRNA) Nannochloropsis gaditana

Overview
Namerna9514
Unique Namerna9514
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length806
Alignment locationKK037254.1:33694..34923 -

Link to JBrowse

Properties
Property NameValue
Producttransducin family protein
Orig transcript idgnl|cribi|Naga_100987g1.9728.mrna
Orig protein idgnl|cribi|Naga_100987g1.9728
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:33694..34923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100987g1gene9235Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9514rna9514-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21190.1cds9483Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9514 ID=rna9514|Name=rna9514|organism=Nannochloropsis gaditana|type=mRNA|length=806bp
GGGGGCGACGGACTGGTTTTAGGCATGGAAGGTGGCGGTAGCGTGACCGA
CGTCCGATGGCACGGGAAAGGGGACTACCTGGCGAGTTTAGTGCCGACAG
CGGGCGGCAAGGCGGTGATGATCCACCAAATCAGCAGGGGGAAGACGCAA
TGCCCCTTCAAAAAGACCCACGGGCAGGTCCAAGCCGTCGCCTTCCATCC
CCACAAACCCTTCTTCTTCCTCGCCACCCAGACGCACGTCCGAGTCTACC
ATCTGGTCAAACAGGTCCTGATGAAGAAGCTGCTGTCGGGGTGTAAGTGG
ATCAGCTCGCTTGACATCCACCCGACTGGCGACCACGTCTTGGTCTCTTC
CTACGACCGGCGCGTCGTCTGGTTCGACCTGGACCTCTCCTCTCTCCCCT
ACAAGACCCTCAAATACCATTCCAAGGCCGTGCGGGCGGTAGCCTTCCAC
CGGTCCTACCCGCTCATGGCCTCGGGGGCGGACGACGGGACCGTGCACGT
CTTTCACGCCACCGTGTACGATGATCTGATGCAAAACCCCTTGGTCGTGC
CGGTGAAGATCTTGCGGGGCCACGCGGTGGTGGGTGAGGTGGGCGTGATG
GCGCTGGCGTTCCATCCAACCCAGCCTTGGGTGTTCTCGGGAGGGGCGGA
TGGGAAGGTGGTGCTGTATCAAGACGCGTTTTGAGCACGGAGGGGGGTCG
GCACTGGGGAATAAGTGACACGGAGCAGGGGAGTGAAGTGGACAAAGTAT
GGGCAGGAAAAATGAAAGGATGACGAAGAAATAAAAAAGGTAACGGATCA
GGTCTT
back to top

protein sequence of rna9514

>rna9514-protein ID=rna9514-protein|Name=rna9514|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQA
EASGGEDGDTDDDVEYLESSDEGDRGRDEALRVEEATPRRWEPAASQAPL
RALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDE
GEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASR
DDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDV
YCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMVP
back to top

mRNA from alignment at KK037254.1:33694..34923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9514 ID=rna9514|Name=rna9514|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp|location=Sequence derived from alignment at KK037254.1:33694..34923- (Nannochloropsis gaditana)
ATGGAAGACGGCACGGTAGGGGAATCCGAGGAGGAAGAAGGAGTGGCAGA
CGGCGATGAGGAAGACAGCGTCTTGGATTCTGAGGAGGAGGAGGAATTTG
AAGACCAAGGCTCCTCAAGCGACGAGAGCGAGGTCCTGGAGGCCCAAGCG
GAAGCCTCGGGGGGGGAAGACGGGGACACGGACGACGACGTCGAATACCT
GGAGAGCAGCGACGAGGGAGACAGAGGACGGGACGAAGCCTTGCGCGTGG
AGGAGGCCACGCCCCGACGTTGGGAACCCGCAGCGTCCCAAGCCCCCCTC
CGGGCGCTCCTGCGGCAAGGAATTCCCAAGGGGGTGGAAGGGACTTCCAC
GGGGAGGAAGAGGGCGGAGGAAATCGAGGTGGAGCGGGCCAGTGGGCGCT
TGGCGGTGGCTGCGGCCATGCACGCGGACGACTTGTCGAGCGACGACGAA
GGGGAAGGGGAAGGCAGGGTCTGGAATGCGATTGGGAGGGTGCCCTTGCA
TTGGTACGACGAGTACGAGCACATGGGCTACGACCTGCAGGGGAAGAAGG
TCATGAGGGGCCGGAAAGGCGACGGCTTGGACGCAGCCTTGGCCAGGTGG
GAGAGAGAAGGGGGAGGGTGGGGAGGTCCCAGTCTTTACTTTTGTCCCGC
TCCCCATTGATGACCGCCTGCTTTCCTTCCCTTCCTTCCCTCCCTCCCTC
CCTCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCTTCACTCCCGTCCTCAG
TCGGGACGACCCTAACTACGGCCGCACCGTCTACGACGCAGTGAACGACA
GGCACGTGGTCCTCACCGACCGAGACCTGGAGATCATCCGTCGGCTGCAG
AAGGGCGCATTCGCTCATCCAGAGCACGAGGCGTATCCGCCCCAAGTCGA
CGTGTACTGTGACGAAGAGAACATTTTTGGACCCTCCGCCCCAGAGCCCA
AGCGGAGGTTCGTTCCATCCAAGTGGGAGCTGATGAAGGTCACGCAGATG
GTGAAAGCGATCAAGGAAGGGCGCATGGTGGTAGGGCCCCCCCCCGCCGC
CATGCAGGCCTCCCATAAGGAGGCGCAACGGCAAGTTTATTTGCTGTGGA
AGGAGGAGGAGGGCGAAGGGGAGGAAGGGAGGAGTCGAAAAGGACCACGA
CACATTCCTGCGCCAAAACTGCCCTTGCCCGGGCACGCGGAGTCGTACAA
CCCGCCCGATGAATATTTGCTCAGCCCTGA
back to top

Coding sequence (CDS) from alignment at KK037254.1:33694..34923-

>rna9514 ID=rna9514|Name=rna9514|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at KK037254.1:33694..34923- (Nannochloropsis gaditana)
CCCTGATCGGGACGACCCTAACTACGGCCGCACCGTCTACGACGCAGTGA
ACGACAGGCACGTGGTCCTCACCGACCGAGACCTGGAGATCATCCGTCGG
CTGCAGAAGGGCGCATTCGCTCATCCAGAGCACGAGGCGTATCCGCCCCA
AGTCGACGTGTACTGTGACGAAGAGAACATTTTTGGACCCTCCGCCCCAG
AGCCCAAGCGGAGGTTCGTTCCATCCAAGTGGGAGCTGATGAAGGTCACG
CAGATGGTGAAAGCGATCAAGGAAGGGCGCATGGTGATGGAAGACGGCAC
GGTAGGGGAATCCGAGGAGGAAGAAGGAGTGGCAGACGGCGATGAGGAAG
ACAGCGTCTTGGATTCTGAGGAGGAGGAGGAATTTGAAGACCAAGGCTCC
TCAAGCGACGAGAGCGAGGTCCTGGAGGCCCAAGCGGAAGCCTCGGGGGG
GGAAGACGGGGACACGGACGACGACGTCGAATACCTGGAGAGCAGCGACG
AGGGAGACAGAGGACGGGACGAAGCCTTGCGCGTGGAGGAGGCCACGCCC
CGACGTTGGGAACCCGCAGCGTCCCAAGCCCCCCTCCGGGCGCTCCTGCG
GCAAGGAATTCCCAAGGGGGTGGAAGGGACTTCCACGGGGAGGAAGAGGG
CGGAGGAAATCGAGGTGGAGCGGGCCAGTGGGCGCTTGGCGGTGGCTGCG
GCCATGCACGCGGACGACTTGTCGAGCGACGACGAAGGGGAAGGGGAAGG
CAGGGTCTGGAATGCGATTGGGAGGGTGCCCTTGCATTGGTACGACGAGT
ACGAGCACATGGGCTACGACCTGCAGGGGAAGAAGGTCATGAGGGGCCGG
AAAGGCGACGGCTTGGACGCAGCCTTGGCCAGCCCTGATCGGGACGACCC
TAACTACGGCCGCACCGTCTACGACGCAGTGAACGACAGGCACGTGGTCC
TCACCGACCGAGACCTGGAGATCATCCGTCGGCTGCAGAAGGGCGCATTC
GCTCATCCAGAGCACGAGGCGTATCCGCCCCAAGTCGACGTGTACTGTGA
CGAAGAGAACATTTTTGGACCCTCCGCCCCAGAGCCCAAGCGGAGGTTCG
TTCCATCCAAGTGGGAGCTGATGAAGGTCACGCAGATGGTGAAAGCGATC
AAGGAAGGGCGCATGGTGATGGAAGACGGCACGGTAGGGGAATCCGAGGA
GGAAGAAGGAGTGGCAGACGGCGATGAGGAAGACAGCGTCTTGGATTCTG
AGGAGGAGGAGGAATTTGAAGACCAAGGCTCCTCAAGCGACGAGAGCGAG
GTCCTGGAGGCCCAAGCGGAAGCCTCGGGGGGGGAAGACGGGGACACGGA
CGACGACGTCGAATACCTGGAGAGCAGCGACGAGGGAGACAGAGGACGGG
ACGAAGCCTTGCGCGTGGAGGAGGCCACGCCCCGACGTTGGGAACCCGCA
GCGTCCCAAGCCCCCCTCCGGGCGCTCCTGCGGCAAGGAATTCCCAAGGG
GGTGGAAGGGACTTCCACGGGGAGGAAGAGGGCGGAGGAAATCGAGGTGG
AGCGGGCCAGTGGGCGCTTGGCGGTGGCTGCGGCCATGCACGCGGACGAC
TTGTCGAGCGACGACGAAGGGGAAGGGGAAGGCAGGGTCTGGAATGCGAT
TGGGAGGGTGCCCTTGCATTGGTACGACGAGTACGAGCACATGGGCTACG
ACCTGCAGGGGAAGAAGGTCATGAGGGGCCGGAAAGGCGACGGCTTGGAC
GCAGCCTTGGCCAGCCCTGATCGGGACGACCCTAACTACGGCCGCACCGT
CTACGACGCAGTGAACGACAGGCACGTGGTCCTCACCGACCGAGACCTGG
AGATCATCCGTCGGCTGCAGAAGGGCGCATTCGCTCATCCAGAGCACGAG
GCGTATCCGCCCCAAGTCGACGTGTACTGTGACGAAGAGAACATTTTTGG
ACCCTCCGCCCCAGAGCCCAAGCGGAGGTTCGTTCCATCCAAGTGGGAGC
TGATGAAGGTCACGCAGATGGTGAAAGCGATCAAGGAAGGGCGCATGGTG
ATGGAAGACGGCACGGTAGGGGAATCCGAGGAGGAAGAAGGAGTGGCAGA
CGGCGATGAGGAAGACAGCGTCTTGGATTCTGAGGAGGAGGAGGAATTTG
AAGACCAAGGCTCCTCAAGCGACGAGAGCGAGGTCCTGGAGGCCCAAGCG
GAAGCCTCGGGGGGGGAAGACGGGGACACGGACGACGACGTCGAATACCT
GGAGAGCAGCGACGAGGGAGACAGAGGACGGGACGAAGCCTTGCGCGTGG
AGGAGGCCACGCCCCGACGTTGGGAACCCGCAGCGTCCCAAGCCCCCCTC
CGGGCGCTCCTGCGGCAAGGAATTCCCAAGGGGGTGGAAGGGACTTCCAC
GGGGAGGAAGAGGGCGGAGGAAATCGAGGTGGAGCGGGCCAGTGGGCGCT
TGGCGGTGGCTGCGGCCATGCACGCGGACGACTTGTCGAGCGACGACGAA
GGGGAAGGGGAAGGCAGGGTCTGGAATGCGATTGGGAGGGTGCCCTTGCA
TTGGTACGACGAGTACGAGCACATGGGCTACGACCTGCAGGGGAAGAAGG
TCATGAGGGGCCGGAAAGGCGACGGCTTGGACGCAGCCTTGGCCAG
back to top
Synonyms
Publications