EWM21190.1, cds9483 (CDS) Nannochloropsis gaditana

Overview
NameEWM21190.1
Unique Namecds9483
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:34328..34923 -
Alignment locationKK037254.1:33894..34173 -
Alignment locationKK037254.1:33694..33699 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21190.1
Producttransducin family protein
Orig transcript idgnl|cribi|Naga_100987g1.9728.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:34328..34923 -
KK037254.1supercontigKK037254.1:33894..34173 -
KK037254.1supercontigKK037254.1:33694..33699 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR012953BOP1_N_dom
Homology
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|585101273|gb|EWM21190.1| (transducin family protein [Nannochloropsis gaditana])

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQAEASGGEDGDTDDDVEYLESSDEGDRGRDEALRVEEATPRRWEPAASQAPLRALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMVP 293
            MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQAEASGGEDGDTDDDVEYLESSDEGDRGRDEALRVEEATPRRWEPAASQAPLRALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMVP
Sbjct:    1 MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQAEASGGEDGDTDDDVEYLESSDEGDRGRDEALRVEEATPRRWEPAASQAPLRALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMVP 293          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|553188524|ref|XP_005854814.1| (block of proliferation 1 [Nannochloropsis gaditana CCMP526] >gi|422294250|gb|EKU21550.1| block of proliferation 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 376.326 bits (965), Expect = 1.735e-116
Identity = 195/198 (98.48%), Postives = 196/198 (98.99%), Query Frame = 0
Query:    1 MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQAEASGGEDGDTDDDVEYLESSDEGDRGRDEALRVEEATPRRWEPAASQAPLRALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALA 198
            MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQAEASGGEDGDTDDDVEYLESSDEGDR RDEALRVEEATPRRW+PAASQAPLRALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRV NAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALA
Sbjct: 1056 MEDGTVGESEEEEGVADGDEEDSVLDSEEEEEFEDQGSSSDESEVLEAQAEASGGEDGDTDDDVEYLESSDEGDRERDEALRVEEATPRRWQPAASQAPLRALLRQGIPKGVEGTSTGRKRAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVRNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALA 1253          

HSP 2 Score: 173.711 bits (439), Expect = 4.147e-45
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0
Query:  213 VNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMV 292
            +NDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMV
Sbjct:  589 LNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSAPEPKRRFVPSKWELMKVTQMVKAIKEGRMV 668          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|301117584|ref|XP_002906520.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107869|gb|EEY65921.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 202.601 bits (514), Expect = 4.053e-56
Identity = 96/172 (55.81%), Postives = 127/172 (73.84%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGP-SAPEPKRRFVPSKWELMKVTQMVKAIKEGRM 291
            R +E++  R  G L+VA+ +H DDLSSDDE        N IG VPL WY++Y+H+GY++ GKK+M+   GDG+D A+A++DDPNY RTVYDA NDR +V++DRD+EIIRR+Q GAFAHPE EAYP  VD+Y   + I    +  EPK RF+PSKWE MKV +++K IKEGR+
Sbjct:   73 REKEVQKMREDGSLSVASQLHVDDLSSDDEENV-----NTIGNVPLRWYEDYDHIGYNVDGKKIMKSNNGDGIDNAIAAKDDPNYDRTVYDAYNDRKIVISDRDMEIIRRMQAGAFAHPEFEAYPDYVDIYSSNKIIHSMGNDLEPKSRFLPSKWERMKVMKIMKGIKEGRI 239          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|953500761|emb|CEG37794.1| (ribosome biogenesis protein bop1-like [Plasmopara halstedii])

HSP 1 Score: 203.371 bits (516), Expect = 4.432e-56
Identity = 98/172 (56.98%), Postives = 126/172 (73.26%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGP-SAPEPKRRFVPSKWELMKVTQMVKAIKEGRM 291
            R  E++  R  G L+VA+ +H DDLSSDDE        N IG VPL WY++Y+H+GY++ GKKVM+   GDG+D A+A++DDPNY RTVYDA NDR +V++DRD+EIIRR+Q GAFAHPE EAYP  VD+Y   + I    +  EPK RF+PSKWE MKV ++VK IKEGR+
Sbjct:  158 REREVQKMREDGSLSVASRLHVDDLSSDDEENV-----NTIGNVPLRWYEDYDHIGYNIDGKKVMKSNNGDGIDNAIAAKDDPNYDRTVYDAYNDRKIVISDRDMEIIRRMQAGAFAHPEFEAYPEYVDIYSSNKIIHSMGNDLEPKSRFLPSKWERMKVMKIVKGIKEGRI 324          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|1173957637|gb|OQS04127.1| (hypothetical protein THRCLA_03604 [Thraustotheca clavata])

HSP 1 Score: 195.282 bits (495), Expect = 1.873e-53
Identity = 94/172 (54.65%), Postives = 126/172 (73.26%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGP-SAPEPKRRFVPSKWELMKVTQMVKAIKEGRM 291
            R ++++  R  G L +A+ +H DDLSSDDE      V N IG VPL WY++Y+H+GY + G+K+++  KGDG+D A+A++DDPNY RTVYDA NDR VV++DRDLEIIRR+Q GAFAHPE EA+   VD +  E+ I    +  EPK RF+PSKWE MKV +++K IKEGR+
Sbjct:   89 REQQLQNMRQDGSLKIASHLHIDDLSSDDE-----EVHNTIGNVPLRWYEDYDHIGYTVDGQKIIKKNKGDGIDDAIAAKDDPNYARTVYDAYNDRKVVISDRDLEIIRRIQAGAFAHPEFEAHADYVDYFTSEKMIHSLGNDQEPKARFLPSKWEKMKVMKIIKGIKEGRI 255          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|635372226|emb|CCI39447.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 193.741 bits (491), Expect = 9.542e-53
Identity = 93/173 (53.76%), Postives = 124/173 (71.68%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSA-PEPKRRFVPSKWELMKVTQMVKAIKEGRMV 292
            R  +IE  RA+G L  A+ +H DDLSSDDE   E R  N IG VPL WYDEYEH+GY + G+K+++ +  D +D  L++ DDP Y RTVYDA NDR +VL++R++EIIRR++ GAFAHPE +AYP  +D+Y  E+ I   +   EPK RF+PSKWE MK+ ++ K IKEGR+V
Sbjct:  122 RERQIESMRANGSLQRASHLHIDDLSSDDE---ESR--NTIGNVPLRWYDEYEHIGYSVDGRKLIKSKNSDNIDKVLSTHDDPEYNRTVYDAYNDRKIVLSEREVEIIRRIKAGAFAHPEFDAYPELLDIYSSEKMIHSMANDQEPKSRFIPSKWERMKILKIAKGIKEGRIV 289          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|635372227|emb|CCI39448.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 193.741 bits (491), Expect = 1.263e-52
Identity = 93/176 (52.84%), Postives = 124/176 (70.45%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDE---GEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGPSA-PEPKRRFVPSKWELMKVTQMVKAIKEGRMV 292
            R  +IE  RA+G L  A+ +H DDLSSDDE      E R  N IG VPL WYDEYEH+GY + G+K+++ +  D +D  L++ DDP Y RTVYDA NDR +VL++R++EIIRR++ GAFAHPE +AYP  +D+Y  E+ I   +   EPK RF+PSKWE MK+ ++ K IKEGR+V
Sbjct:  122 RERQIESMRANGSLQRASHLHIDDLSSDDEVLRSRTESR--NTIGNVPLRWYDEYEHIGYSVDGRKLIKSKNSDNIDKVLSTHDDPEYNRTVYDAYNDRKIVLSEREVEIIRRIKAGAFAHPEFDAYPELLDIYSSEKMIHSMANDQEPKSRFIPSKWERMKILKIAKGIKEGRIV 295          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|1173932071|gb|OQR84191.1| (hypothetical protein ACHHYP_13740 [Achlya hypogyna])

HSP 1 Score: 190.66 bits (483), Expect = 1.249e-51
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGP-SAPEPKRRFVPSKWELMKVTQMVKAIKEGRM 291
            R ++++  R  G L VA+ +H DDLSSDDE      V N IG VPL WY++Y+H+GY + G+K+++  +GDG+D A+A++DDPNY RTVYDA NDR VV++DR++EIIRR+Q GAFAHPE EA+   VD +  E+ I    +  EPK RF+PSKWE MKV +++K IKEGR+
Sbjct:  105 REQQLQRMREDGSLKVASHLHIDDLSSDDE-----EVHNTIGNVPLRWYEDYDHIGYTVDGEKIIKKNQGDGIDNAIAAKDDPNYARTVYDAYNDRKVVISDREMEIIRRIQAGAFAHPEFEAHADYVDYFTSEKMIHSLGNDQEPKARFLPSKWEKMKVMKIIKGIKEGRI 271          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|970659812|gb|KUF97420.1| (2-oxoglutarate dehydrogenase E1 component DHKTD1 [Phytophthora nicotianae])

HSP 1 Score: 189.889 bits (481), Expect = 5.617e-51
Identity = 93/171 (54.39%), Postives = 121/171 (70.76%), Query Frame = 0
Query:  122 AEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGP-SAPEPKRRFVPSKWELMKVTQMVKAIKEGRM 291
            AE  E+E+ + R      +H DDLSSDDE        N IG VPL WY++Y+H+GY++ GKK+M+   GDG+D A+A++DDP Y RTVYDA NDR +V++DRD+EIIRR+Q GAFAHPE EAYP  VD+Y     I    +  EPK RF+PSKWE MKV +++K IKEGR+
Sbjct:  285 AELTELEKKTRRFT----LHVDDLSSDDEENV-----NTIGNVPLRWYEDYDHIGYNVDGKKIMKSNNGDGIDDAIAAKDDPYYDRTVYDAYNDRKIVISDRDMEIIRRMQAGAFAHPEFEAYPDYVDIYSSNTIIHAMGNDLEPKSRFLPSKWERMKVMKIMKGIKEGRI 446          
BLAST of EWM21190.1 vs. NCBI_GenBank
Match: gi|813119637|ref|XP_012196330.1| (hypothetical protein SPRG_02364 [Saprolegnia parasitica CBS 223.65] >gi|641538842|gb|KDO32663.1| hypothetical protein SPRG_02364 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 186.037 bits (471), Expect = 5.866e-50
Identity = 89/172 (51.74%), Postives = 124/172 (72.09%), Query Frame = 0
Query:  121 RAEEIEVERASGRLAVAAAMHADDLSSDDEGEGEGRVWNAIGRVPLHWYDEYEHMGYDLQGKKVMRGRKGDGLDAALASRDDPNYGRTVYDAVNDRHVVLTDRDLEIIRRLQKGAFAHPEHEAYPPQVDVYCDEENIFGP-SAPEPKRRFVPSKWELMKVTQMVKAIKEGRM 291
            R E ++  R  G L VA+ +H DDLSSDDE      V N IG VPL WY++Y+H+GY + G+K+++  +GDG+D A+A++DDPNY RT+YDA NDR V+++DR++EIIRR+Q GAFAHPE + +   VD +  E+ I    +  EPK RF+PSKWE MKV +++K IKEGR+
Sbjct:  104 REEMLQRMREDGSLKVASHLHMDDLSSDDE-----EVHNTIGNVPLRWYEDYDHIGYTVDGQKIIKQNQGDGIDNAIAAKDDPNYARTIYDAYNDRKVIISDREMEIIRRIQAGAFAHPEFQEHQDYVDYFTSEKMIHSLGNDQEPKARFLPSKWEKMKVVKIMKGIKEGRI 270          
The following BLAST results are available for this feature:
BLAST of EWM21190.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101273|gb|EWM21190.1|0.000e+0100.00transducin family protein [Nannochloropsis gaditan... [more]
gi|553188524|ref|XP_005854814.1|1.735e-11698.48block of proliferation 1 [Nannochloropsis gaditana... [more]
gi|301117584|ref|XP_002906520.1|4.053e-5655.81conserved hypothetical protein [Phytophthora infes... [more]
gi|953500761|emb|CEG37794.1|4.432e-5656.98ribosome biogenesis protein bop1-like [Plasmopara ... [more]
gi|1173957637|gb|OQS04127.1|1.873e-5354.65hypothetical protein THRCLA_03604 [Thraustotheca c... [more]
gi|635372226|emb|CCI39447.1|9.542e-5353.76unnamed protein product [Albugo candida][more]
gi|635372227|emb|CCI39448.1|1.263e-5252.84unnamed protein product [Albugo candida][more]
gi|1173932071|gb|OQR84191.1|1.249e-5153.49hypothetical protein ACHHYP_13740 [Achlya hypogyna... [more]
gi|970659812|gb|KUF97420.1|5.617e-5154.392-oxoglutarate dehydrogenase E1 component DHKTD1 [... [more]
gi|813119637|ref|XP_012196330.1|5.866e-5051.74hypothetical protein SPRG_02364 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9514rna9514Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications