rna9513, rna9513 (mRNA) Nannochloropsis gaditana

Overview
Namerna9513
Unique Namerna9513
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1524
Alignment locationKK037254.1:32126..32931 -

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Properties
Property NameValue
Productribosome biogenesis protein bop1
Orig transcript idgnl|cribi|Naga_100474g5.5241.mrna
Orig protein idgnl|cribi|Naga_100474g5.5241
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:32126..32931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100474g5gene9234Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21191.1cds9482Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9513rna9513-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9513 ID=rna9513|Name=rna9513|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
AGGGCGCTTTGTGGTTTCGACAATACTTCCTCGGCGGCAATCGCAAGCCG
GTTGTATAGGCTTTGACCCGATGCTACCATGACGTAGGTAGGTAAGTTGC
CTTCACACTGTCAGCGAATGGGACTCGAGTGGATCTTTTACTTGACGGGT
ACTCGCTGGGCGCGACCGCCGAGCACGAACCGATCGTGATCAAAGATCAT
AGAAATGGCTTCCAGAGGGTTTTTGAGAGATGGTCATATCTGCGTATGCA
AAGGTAATGCGTACCAAGAATACTTGGGGCAATTTGGGAAGGCAAGATAA
TGACGTGAAACAGACTAGGATAGCGTTCGTTGATCTTGCTCCTGTGCTGA
ATTCTAAGCACTATCATTCGTGTATCGTCTGGCCATGTCAATAATCTTTC
CCGAAAATAATTCAGCGCTTTGCAGACTGTGGTAATTCAATCATGAAAAC
GGCTTTCTTTGGGTTGCCAGCAGCCGCTTTGTTGTTTTTGGGGACGATGC
CCCAAGCCTTCTCCGCCTTCGTCAGCTCTGACGTCTATGCCAATAATGAC
CTCACTGGGGACGAGCGAGTCTGTAAAAACAGGCAATTCAAGAATTTTTT
AAAGTGTGCTCATGCTGAAAAGGGCAATGCGAGTACATGGCCCGATCTTT
CTTCTTGTCAATCCCTGTTAGGGGATTGTCGTGGCTGGGCCTATGATGGA
GTCAACGATGGAGCCATCACAGGAAATACGGAGGCGTACCTAGGGATCGC
TGGCATTTCCAAGAACGCCAGGTACTTCGGGTATTATGCATACGGTAACG
CGGACCCGAAGAAATACGTGCCGTTTGATTGCAACTATGTCTCCAGGCTC
TACAAAAAGGTCGGGCGCTGTATACTGGGTCAATCGACCGTGGTGGGTAC
CATTGACTTTACTGACTTGGTGACTGACTGTGTGGAGATCACCTTATCCC
GAGCCGAGGCCGCGTTTGTCTTCTCTCAGACCAACTTTGCCTTTGGTATG
CCGGTGCCTGTCGGCGTGGTGAAGTACTTTTATATGGCTCCCTTCTTGAG
GTTGAGTGACGACATAAATTACGAGAATTGCCCCATTTTGGAGGGCCATT
TTAAGAAGGGCTCCCCCATCGTGCGCGCATCGAAGGGCGGTGCGGTTCCG
ACGGCGTAGTTGCTGCGTATCGTTACCCCTCCTAGCGTGCACTTCCAGTT
TGTCTGTCCCATATGCATGGGCCTTGGTCTCTGGTATTAGCTGCAGGTAT
TCAGCTGTTTGCGCTGTAGTAAATTGTGCTTCTTGGATGACGGGCGGACC
GAATGTGAAATTTAGTTGCTAGCCAGGGGGTTATTGCATGTGCGAGTTTT
TAGTGAACGTCTTTCCAAGAAGCATTCAAAGCAAGATGACTGGAGAGTCA
TTATTTTTGATATCTTTGCACCAGGAAGCAGGTGGGATCTGGTGTGCTGT
AGAGAGATGTGAATGAAGCGAAAAATAGAGAGCCAACAACGAAGCTACAA
TTAAATTAGATTCGTCCAACCGGT
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protein sequence of rna9513

>rna9513-protein ID=rna9513-protein|Name=rna9513|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQ
CPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKW
ISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFH
RSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVM
ALAFHPTQPWVFSGGADGKVVLYQDAF
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mRNA from alignment at KK037254.1:32126..32931-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9513 ID=rna9513|Name=rna9513|organism=Nannochloropsis gaditana|type=mRNA|length=806bp|location=Sequence derived from alignment at KK037254.1:32126..32931- (Nannochloropsis gaditana)
GGGGGCGACGGACTGGTTTTAGGCATGGAAGGTGGCGGTAGCGTGACCGA
CGTCCGATGGCACGGGAAAGGGGACTACCTGGCGAGTTTAGTGCCGACAG
CGGGCGGCAAGGCGGTGATGATCCACCAAATCAGCAGGGGGAAGACGCAA
TGCCCCTTCAAAAAGACCCACGGGCAGGTCCAAGCCGTCGCCTTCCATCC
CCACAAACCCTTCTTCTTCCTCGCCACCCAGACGCACGTCCGAGTCTACC
ATCTGGTCAAACAGGTCCTGATGAAGAAGCTGCTGTCGGGGTGTAAGTGG
ATCAGCTCGCTTGACATCCACCCGACTGGCGACCACGTCTTGGTCTCTTC
CTACGACCGGCGCGTCGTCTGGTTCGACCTGGACCTCTCCTCTCTCCCCT
ACAAGACCCTCAAATACCATTCCAAGGCCGTGCGGGCGGTAGCCTTCCAC
CGGTCCTACCCGCTCATGGCCTCGGGGGCGGACGACGGGACCGTGCACGT
CTTTCACGCCACCGTGTACGATGATCTGATGCAAAACCCCTTGGTCGTGC
CGGTGAAGATCTTGCGGGGCCACGCGGTGGTGGGTGAGGTGGGCGTGATG
GCGCTGGCGTTCCATCCAACCCAGCCTTGGGTGTTCTCGGGAGGGGCGGA
TGGGAAGGTGGTGCTGTATCAAGACGCGTTTTGAGCACGGAGGGGGGTCG
GCACTGGGGAATAAGTGACACGGAGCAGGGGAGTGAAGTGGACAAAGTAT
GGGCAGGAAAAATGAAAGGATGACGAAGAAATAAAAAAGGTAACGGATCA
GGTCTT
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Coding sequence (CDS) from alignment at KK037254.1:32126..32931-

>rna9513 ID=rna9513|Name=rna9513|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at KK037254.1:32126..32931- (Nannochloropsis gaditana)
GGGGGCGACGGACTGGTTTTAGGCATGGAAGGTGGCGGTAGCGTGACCGA
CGTCCGATGGCACGGGAAAGGGGACTACCTGGCGAGTTTAGTGCCGACAG
CGGGCGGCAAGGCGGTGATGATCCACCAAATCAGCAGGGGGAAGACGCAA
TGCCCCTTCAAAAAGACCCACGGGCAGGTCCAAGCCGTCGCCTTCCATCC
CCACAAACCCTTCTTCTTCCTCGCCACCCAGACGCACGTCCGAGTCTACC
ATCTGGTCAAACAGGTCCTGATGAAGAAGCTGCTGTCGGGGTGTAAGTGG
ATCAGCTCGCTTGACATCCACCCGACTGGCGACCACGTCTTGGTCTCTTC
CTACGACCGGCGCGTCGTCTGGTTCGACCTGGACCTCTCCTCTCTCCCCT
ACAAGACCCTCAAATACCATTCCAAGGCCGTGCGGGCGGTAGCCTTCCAC
CGGTCCTACCCGCTCATGGCCTCGGGGGCGGACGACGGGACCGTGCACGT
CTTTCACGCCACCGTGTACGATGATCTGATGCAAAACCCCTTGGTCGTGC
CGGTGAAGATCTTGCGGGGCCACGCGGTGGTGGGTGAGGTGGGCGTGATG
GCGCTGGCGTTCCATCCAACCCAGCCTTGGGTGTTCTCGGGAGGGGCGGA
TGGGAAGGTGGTGCTGTATCAAGACGCGTTTTGA
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Synonyms
Publications