EWM21191.1, cds9482 (CDS) Nannochloropsis gaditana

Overview
NameEWM21191.1
Unique Namecds9482
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:32248..32931 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21191.1
Productribosome biogenesis protein bop1
Partialtrue
Orig transcript idgnl|cribi|Naga_100474g5.5241.mrna
GbkeyCDS
End range.
End range32931
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:32248..32931 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|585101275|gb|EWM21191.1| (ribosome biogenesis protein bop1, partial [Nannochloropsis gaditana])

HSP 1 Score: 460.685 bits (1184), Expect = 5.768e-164
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0
Query:    1 GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQDAF 227
            GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQDAF
Sbjct:    1 GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQDAF 227          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|553188524|ref|XP_005854814.1| (block of proliferation 1 [Nannochloropsis gaditana CCMP526] >gi|422294250|gb|EKU21550.1| block of proliferation 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 486.108 bits (1250), Expect = 1.956e-158
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQDA 226
            GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQDA
Sbjct:  153 GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQDA 378          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|1173957637|gb|OQS04127.1| (hypothetical protein THRCLA_03604 [Thraustotheca clavata])

HSP 1 Score: 334.339 bits (856), Expect = 3.395e-107
Identity = 150/224 (66.96%), Postives = 181/224 (80.80%), Query Frame = 0
Query:    2 GDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            G G+ + +   GSVTDV WH KGDYL+++VP+A   AV+IHQ+S+  +Q PF K  G +Q VAFHP KPFFFLATQTHVRVY+LV+Q ++KKL SG KWISSL +HPTGDHVLV SYDRR+ WFDLDLSS PYKTLKYH KA RAV FH+ YPLMAS +DDGT+H+FHA VY DL++NPL+VP+KILRGH V G +GV+ LAFHPT PW+ SGGAD  + LYQ+
Sbjct:  536 GRGVRIVLHHSGSVTDVAWHYKGDYLSTVVPSADSCAVLIHQLSKRSSQNPFSKKLGAIQTVAFHPSKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISSLHVHPTGDHVLVGSYDRRLCWFDLDLSSTPYKTLKYHEKATRAVGFHKKYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHEVTGGLGVLTLAFHPTLPWIASGGADNTIRLYQN 759          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|325185433|emb|CCA19917.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 329.331 bits (843), Expect = 7.687e-105
Identity = 142/211 (67.30%), Postives = 176/211 (83.41%), Query Frame = 0
Query:   15 VTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            V D+ WH KGDYLAS+ PTAG  AV+IHQIS+ KTQ PF+K  G VQ+V FHP KPF F ATQ HVRVY+L+KQ L+KKL SG KWISSLD+HP+GDH+++ SYDRR+ WFDLDLSS P+KTLKYH KA+RAV++H  +PLMAS +DDGTVH+FHA VY DL++NPL+VP+KILRGH + G++GVMA+AFHP  PW+ +GGADG V L+Q+
Sbjct:  591 VKDIAWHYKGDYLASVTPTAGAAAVLIHQISKKKTQNPFRKNLGTVQSVLFHPTKPFLFHATQRHVRVYNLIKQTLVKKLSSGVKWISSLDVHPSGDHLIIGSYDRRLCWFDLDLSSTPFKTLKYHEKAIRAVSYHSKHPLMASCSDDGTVHIFHAMVYSDLIKNPLIVPLKILRGHQICGDLGVMAVAFHPALPWLVTGGADGTVRLFQN 801          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|635372227|emb|CCI39448.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 329.717 bits (844), Expect = 7.723e-105
Identity = 140/211 (66.35%), Postives = 177/211 (83.89%), Query Frame = 0
Query:   15 VTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            V D+ WH KGDYLA++ P+AG  AV+IHQIS+ KTQ PF+K+ G VQ+V FHP KPF F ATQ HVRVY+L+KQ L+KKL SG KWISS+D+HP+GDHV++ SYDRR+ WFDLDLSS PYKTLKYH KA+RAV++H  +PLMAS +DDGTVH+FHA VY DL++NPL+VP+KILRGH + G++GVM +AFHP+ PW+ +GGADG V L+Q+
Sbjct:  599 VKDIAWHYKGDYLAAVTPSAGSAAVLIHQISKKKTQNPFRKSMGSVQSVLFHPSKPFLFHATQRHVRVYNLIKQTLVKKLSSGVKWISSMDVHPSGDHVIIGSYDRRLCWFDLDLSSTPYKTLKYHEKAIRAVSYHSKHPLMASCSDDGTVHIFHAMVYSDLIKNPLIVPLKILRGHQICGDLGVMTVAFHPSLPWLVTGGADGTVRLFQN 809          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|635372226|emb|CCI39447.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 329.331 bits (843), Expect = 8.032e-105
Identity = 140/211 (66.35%), Postives = 177/211 (83.89%), Query Frame = 0
Query:   15 VTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            V D+ WH KGDYLA++ P+AG  AV+IHQIS+ KTQ PF+K+ G VQ+V FHP KPF F ATQ HVRVY+L+KQ L+KKL SG KWISS+D+HP+GDHV++ SYDRR+ WFDLDLSS PYKTLKYH KA+RAV++H  +PLMAS +DDGTVH+FHA VY DL++NPL+VP+KILRGH + G++GVM +AFHP+ PW+ +GGADG V L+Q+
Sbjct:  593 VKDIAWHYKGDYLAAVTPSAGSAAVLIHQISKKKTQNPFRKSMGSVQSVLFHPSKPFLFHATQRHVRVYNLIKQTLVKKLSSGVKWISSMDVHPSGDHVIIGSYDRRLCWFDLDLSSTPYKTLKYHEKAIRAVSYHSKHPLMASCSDDGTVHIFHAMVYSDLIKNPLIVPLKILRGHQICGDLGVMTVAFHPSLPWLVTGGADGTVRLFQN 803          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|1072235618|gb|OEU20347.1| (BOP1NT-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 325.865 bits (834), Expect = 9.450e-105
Identity = 142/225 (63.11%), Postives = 178/225 (79.11%), Query Frame = 0
Query:    1 GGDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            G  G +  +     ++ VRWH KGDY  S+ P AG  +V+IHQ+S+G +Q PF K  G+ QA  FHP+KPF F+A+Q HVRVYHLVKQ ++K+L+SGC+WISSLDIH +GDH++V S DRR+VWFDLDLSS PYKTLKYH +AVRAV FH+ YPLMAS +DDG+VH+FH+ VY DLM+NPL+VPVKILRGH +    GV+ LAFHPTQPW+F+ GADGK+ LYQD
Sbjct:  446 GFSGPISALRTKAEMSKVRWHVKGDYFVSISPKAGAPSVLIHQLSKGNSQQPFSKAKGEAQAACFHPNKPFLFVASQQHVRVYHLVKQAMVKRLISGCRWISSLDIHKSGDHLIVGSLDRRMVWFDLDLSSTPYKTLKYHERAVRAVQFHQRYPLMASASDDGSVHIFHSMVYSDLMRNPLIVPVKILRGHTIQNRHGVLTLAFHPTQPWIFTAGADGKIFLYQD 670          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|298714471|emb|CBJ27493.1| (Similar to novel protein similar to vertebrate block of proliferation 1 (BOP1) [Ectocarpus siliculosus])

HSP 1 Score: 324.324 bits (830), Expect = 1.538e-104
Identity = 151/228 (66.23%), Postives = 181/228 (79.39%), Query Frame = 0
Query:    1 GGDGLV---LGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            G DG V   + +     V  V WHGKGDYLAS+      +AVMIHQ+S+  TQCPF+KT G+VQ V FH  KPF F+AT+  VR+YHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+S PYKTLKYH+KAVRA  FHR YPLMAS +DDG+VHVFHATVY DL++NPLVVP+KILRGH V G +GVMAL FHP QPWVF+ GADG V L+QD
Sbjct:  414 GSDGEVGPRVVLRCEREVCCVTWHGKGDYLASVSRGEDRRAVMIHQVSKASTQCPFRKTKGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRAAQFHRHYPLMASASDDGSVHVFHATVYSDLLRNPLVVPLKILRGHEVTGGLGVMALVFHPRQPWVFTAGADGAVRLFQD 641          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|813119637|ref|XP_012196330.1| (hypothetical protein SPRG_02364 [Saprolegnia parasitica CBS 223.65] >gi|641538842|gb|KDO32663.1| hypothetical protein SPRG_02364 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 327.791 bits (839), Expect = 1.635e-104
Identity = 151/224 (67.41%), Postives = 181/224 (80.80%), Query Frame = 0
Query:    2 GDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            G G+ + +  GG VTDV WH KGDYL+++VP+A   +V+IHQIS+  +Q PF K  G +Q VAFHP KPFFFLATQTHVRVY+LV+Q ++KKL SG KWISSL +HPTGDHVLV SYDRR+ WFDLDLSS PYKTLKYH KA RAV FH+ YPLMAS +DDGT+H+FHA VY DL++NPL+VP+KILRGH V G +GVM LAFHPT PW+ SGGAD  + LYQ+
Sbjct:  552 GRGVRVVLHHGGLVTDVAWHYKGDYLSTVVPSADSSSVLIHQISKRSSQNPFTKKLGSIQTVAFHPSKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISSLHVHPTGDHVLVGSYDRRLCWFDLDLSSTPYKTLKYHEKATRAVGFHKKYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHEVTGGLGVMTLAFHPTLPWIASGGADNTIRLYQN 775          
BLAST of EWM21191.1 vs. NCBI_GenBank
Match: gi|669157090|ref|XP_008614107.1| (hypothetical protein SDRG_09919 [Saprolegnia diclina VS20] >gi|530734364|gb|EQC32606.1| hypothetical protein SDRG_09919 [Saprolegnia diclina VS20])

HSP 1 Score: 327.405 bits (838), Expect = 3.863e-104
Identity = 151/224 (67.41%), Postives = 181/224 (80.80%), Query Frame = 0
Query:    2 GDGLVLGMEGGGSVTDVRWHGKGDYLASLVPTAGGKAVMIHQISRGKTQCPFKKTHGQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAVAFHRSYPLMASGADDGTVHVFHATVYDDLMQNPLVVPVKILRGHAVVGEVGVMALAFHPTQPWVFSGGADGKVVLYQD 225
            G G+ + +  GG VTDV WH KGDYL+++VP+A   +V+IHQIS+  +Q PF K  G +Q VAFHP KPFFFLATQTHVRVY+LV+Q ++KKL SG KWISSL +HPTGDHVLV SYDRR+ WFDLDLSS PYKTLKYH KA RAV FH+ YPLMAS +DDGT+H+FHA VY DL++NPL+VP+KILRGH V G +GVM LAFHPT PW+ SGGAD  + LYQ+
Sbjct:  568 GRGVRVVLHHGGLVTDVAWHYKGDYLSTVVPSADSSSVLIHQISKRSSQNPFTKKLGSIQTVAFHPSKPFFFLATQTHVRVYNLVQQAMVKKLSSGVKWISSLHVHPTGDHVLVGSYDRRLCWFDLDLSSTPYKTLKYHEKATRAVGFHKKYPLMASASDDGTIHIFHAMVYSDLIKNPLIVPLKILRGHEVTGGLGVMTLAFHPTLPWIASGGADNTIRLYQN 791          
The following BLAST results are available for this feature:
BLAST of EWM21191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101275|gb|EWM21191.1|5.768e-164100.00ribosome biogenesis protein bop1, partial [Nannoch... [more]
gi|553188524|ref|XP_005854814.1|1.956e-158100.00block of proliferation 1 [Nannochloropsis gaditana... [more]
gi|1173957637|gb|OQS04127.1|3.395e-10766.96hypothetical protein THRCLA_03604 [Thraustotheca c... [more]
gi|325185433|emb|CCA19917.1|7.687e-10567.30conserved hypothetical protein [Albugo laibachii N... [more]
gi|635372227|emb|CCI39448.1|7.723e-10566.35unnamed protein product [Albugo candida][more]
gi|635372226|emb|CCI39447.1|8.032e-10566.35unnamed protein product [Albugo candida][more]
gi|1072235618|gb|OEU20347.1|9.450e-10563.11BOP1NT-domain-containing protein [Fragilariopsis c... [more]
gi|298714471|emb|CBJ27493.1|1.538e-10466.23Similar to novel protein similar to vertebrate blo... [more]
gi|813119637|ref|XP_012196330.1|1.635e-10467.41hypothetical protein SPRG_02364 [Saprolegnia paras... [more]
gi|669157090|ref|XP_008614107.1|3.863e-10467.41hypothetical protein SDRG_09919 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9513rna9513Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications