rna9509, rna9509 (mRNA) Nannochloropsis gaditana

Overview
Namerna9509
Unique Namerna9509
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length222
Alignment locationKK037254.1:23050..23328 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100474g1.5245.mrna
Orig protein idgnl|cribi|Naga_100474g1.5245
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:23050..23328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100474g1gene9230Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21195.1cds9478Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9509rna9509-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9509 ID=rna9509|Name=rna9509|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGGACAACGGTTACTGCCAAACCCAAAAAGAAACCTGCGACGGGAGGGG
CGAGGCCTGCGGGTGTCACCCAACCGTGGCAGACCCGGTCCACTGCGTCC
TCGGCATCGACATACACGGGAGGAGGCGCCGCGTCTTCGGCCAAAAAATA
CGCGGCCGGAGAGAACAAGAGCGCGCACACCAATACGGGGGCAAATTTGA
GGAAATTGGAAGAGGAGACTGA
back to top

protein sequence of rna9509

>rna9509-protein ID=rna9509-protein|Name=rna9509|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MWHGSGHMGLLLLLVSCATAFLLPAAPSPRAISSSTKNPIARFASSIDEA
PSLVERQEPQPQAQQEPPPRGNARRPLSPKPAGPWVLLEGEL
back to top

mRNA from alignment at KK037254.1:23050..23328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9509 ID=rna9509|Name=rna9509|organism=Nannochloropsis gaditana|type=mRNA|length=279bp|location=Sequence derived from alignment at KK037254.1:23050..23328- (Nannochloropsis gaditana)
ATGTGGCATGGGTCTGGCCATATGGGGCTCCTCCTTCTCCTGGTGTCTTG
TGCCACTGCCTTCCTCCTTCCTGCCGCGCCCTCCCCACGCGCCATCTCTT
CCTCAACCAAGAACCCAATAGCTCGTTTCGCGTCCTCCATCGACGAGGCG
CCTTCTCTGGTGGAACGACAGGAACCGCAACCTCAAGCACAACAGGAGCC
ACCCCCGCGTGGTAATGCGCGCCGCCCTCTGTCCCCGAAGCCCGCAGGAC
CTTGGGTGCTTCTGGAAGGTGAGCTCTGA
back to top

Coding sequence (CDS) from alignment at KK037254.1:23050..23328-

>rna9509 ID=rna9509|Name=rna9509|organism=Nannochloropsis gaditana|type=CDS|length=279bp|location=Sequence derived from alignment at KK037254.1:23050..23328- (Nannochloropsis gaditana)
ATGTGGCATGGGTCTGGCCATATGGGGCTCCTCCTTCTCCTGGTGTCTTG
TGCCACTGCCTTCCTCCTTCCTGCCGCGCCCTCCCCACGCGCCATCTCTT
CCTCAACCAAGAACCCAATAGCTCGTTTCGCGTCCTCCATCGACGAGGCG
CCTTCTCTGGTGGAACGACAGGAACCGCAACCTCAAGCACAACAGGAGCC
ACCCCCGCGTGGTAATGCGCGCCGCCCTCTGTCCCCGAAGCCCGCAGGAC
CTTGGGTGCTTCTGGAAGGTGAGCTCTGA
back to top
Synonyms
Publications