rna9506, rna9506 (mRNA) Nannochloropsis gaditana

Overview
Namerna9506
Unique Namerna9506
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length828
Alignment locationKK037254.1:18682..19825 -

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Properties
Property NameValue
ProductSmr MutS2 protein
Orig transcript idgnl|cribi|Naga_101931g1.4408.mrna
Orig protein idgnl|cribi|Naga_101931g1.4408
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:18682..19825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101931g1gene9227Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21198.1cds9475Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9506rna9506-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9506 ID=rna9506|Name=rna9506|organism=Nannochloropsis gaditana|type=mRNA|length=828bp
CCTCCTGGCGGAGATCCTTGACTGGGATCCTGTCCTCCACCGCTCGCTGA
GTTGTGTGCTCGCCACGGAAAAGGCCGAGCATCTCGGCCTTTCCTTCACC
CACAGCCGCCCGGTCTGGGTCCAGAAAGGGACCGACCCAGGCACGAGGGT
AGTGGCAGTGGAAGAGACGCCGCTCTGTGAGGGGGGGGAGGTTCGGGAGG
TTACGGATGCGAACAAGGAGGAATTCGTCGTTCGCCTCCTCCACGCCCAT
TTCCAGGCCTACCTCCCTGCCGCCCGGGCATTGCGGCGGGGGCTCTTGGA
TGTGCTGCGGCCCAGCAACGGGCGTCTGTTGAAGATATACACGGCCATGG
AGCTCGCCACATTGAGCGGAGGGGTCTCCGACCTGCCCGTCTCCGAATGG
CGAACGCATACCACCCTCTCCTCCGCCCTCCTCCACCTGTCCTCCTCCCC
GCCCTCCGGCCCTCCCTCCCCCCCGTCGGCTTCCCGACGCGGCACGGACA
GAAGGTGCTGAGCTGGTTCTGGGCCTTCCTGGAAACGCTCTCCAAAGAAG
ATAAAGCCCTCCTTCTAAAATTCGCCACCGGCCTCTCCCGTCTGCCCGTG
GGGGGGTTCTCTGCCCTCCAACCCCCCTTCACCTTGCAGCCGCTGGCATT
CGATTCGGCGCGACCGTTACCGATCGCCGCCACCTGTTTCCACGTCTTGA
AGCTGCCCTTGTATCCAACGGCGGAGGACTTGGAGAAACATGTCCTGCTT
GCCCTCCGGTTTGGGAGTGAAGGCTTTGCATTTGCATGAAGGGTAACAAC
CCCTCCCTCCCTCCCTCCCTCCCTCCCT
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protein sequence of rna9506

>rna9506-protein ID=rna9506-protein|Name=rna9506|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
PPRREAAQALFDRAVGQGLCPSLEMYGALVDVYAKEGDVPGACRVFREAL
GHLQREGRKEGGREGGREGGKDNPFSYLYTSLIHAFNTAPTPLSPPPSPG
SSPPSSPLPSSSEGEAPLPSSSEGEAPWPAALYLFEEYQLGVRGNRTTIP
LLTAVARSLDAALPPSRPRAPPPFPLPTAILHVLYRRHAPLTPLRSHWSY
RYPSSLDLHLLTRPLAQAAVHTALEEIRQGEVTLAPEGLQIIVGKSSQVV
RGGVKEALGEECRPPLEVEEVGGNDGRLLVSLASVNAWLARQGEGEGGGD
GKAGGRKEAKVNPAYTLETPRG
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mRNA from alignment at KK037254.1:18682..19825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9506 ID=rna9506|Name=rna9506|organism=Nannochloropsis gaditana|type=mRNA|length=1144bp|location=Sequence derived from alignment at KK037254.1:18682..19825- (Nannochloropsis gaditana)
CCCCCCCGGAGGGAGGCCGCGCAAGCCCTCTTTGACCGGGCCGTGGGCCA
AGGTCTCTGCCCTTCTTTGGAGATGTACGGGGCACTTGTGGATGTGTACG
CGAAGGAGGGGGACGTCCCGGGGGCCTGTCGAGTCTTCCGGGAGGCCTTG
GGGCATCTCCAGCGGGAGGGCAGGAAGGAGGGCGGGAGGGAGGGCGGGAG
GGAAGGAGGGAAAGATAACCCGTTTTCCTACCTGTACACAAGTTTGATTC
ACGCCTTCAACACGGCTCCAACGCCGCTTTCTCCCCCGCCCTCCCCCGGT
TCCTCTCCCCCGTCCTCCCCTCTCCCTTCCTCCTCGGAGGGAGAAGCCCC
TCTCCCTTCCTCCTCAGAGGGAGAAGCCCCGTGGCCCGCGGCGCTTTACC
TCTTTGAAGAGTACCAGCTTGGCGTGCGTGGGAACAGGACCACCATACCC
CTCCTCACCGCGGTCGCCCGCTCCTTGGATGCAGCCCTCCCTCCCTCCCG
CCCTCGCGCCCCGCCTCCTTTTCCCCTGCCCACGGCCATCCTCCACGTCC
TTTACCGACGCCACGCCCCCCTCACGCCTCTCCGCTCCCATTGGTCGTAC
CGGTACCCATCCTCCCTTGACCTTCACCTCCTCACCCGACCCTTGGCCCA
GGCCGCGGTCCACACGGCTTTGGAGGAGATACGGCAAGGTGAAGTCACCT
TAGCACCGGAAGGGCTGCAGATCATCGTGGGGAAAAGCAGTCAGGTCGTG
CGGGGGGGAGTGAAGGAGGCCTTGGGCGAAGAGTGCCGCCCGCCTCTGGA
AGTGGAAGAGGTGGGGGGAAACGATGGGAGGTTGCTGGTGTCATTGGCGA
GTGTGAATGCTTGGTTGGCGCGACAAGGGGAGGGGGAGGGAGGAGGGGAC
GGGAAGGCGGGGGGGAGGAAGGAGGCGAAAGTGAACCCGGCGTACACCTT
GGAGACGCCGAGGGGATGAGGGAGGGGGAGGGAAGGGGGGAGGGGAAGGA
AGGGGAGGGAAGAGGTGGCGTGTTGCCCTGGTGTAGAAGGTCGCCAGATA
GGAAGGGAGGAGGTTTGCAAGGAGATGGCGCAAAGTACTTCGAGAAAACA
GAAAGATAGGGAATGGAGGCAATGAAACGATGCAGACATTGAGA
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Coding sequence (CDS) from alignment at KK037254.1:18682..19825-

>rna9506 ID=rna9506|Name=rna9506|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at KK037254.1:18682..19825- (Nannochloropsis gaditana)
CCCCCCCGGAGGGAGGCCGCGCAAGCCCTCTTTGACCGGGCCGTGGGCCA
AGGTCTCTGCCCTTCTTTGGAGATGTACGGGGCACTTGTGGATGTGTACG
CGAAGGAGGGGGACGTCCCGGGGGCCTGTCGAGTCTTCCGGGAGGCCTTG
GGGCATCTCCAGCGGGAGGGCAGGAAGGAGGGCGGGAGGGAGGGCGGGAG
GGAAGGAGGGAAAGATAACCCGTTTTCCTACCTGTACACAAGTTTGATTC
ACGCCTTCAACACGGCTCCAACGCCGCTTTCTCCCCCGCCCTCCCCCGGT
TCCTCTCCCCCGTCCTCCCCTCTCCCTTCCTCCTCGGAGGGAGAAGCCCC
TCTCCCTTCCTCCTCAGAGGGAGAAGCCCCGTGGCCCGCGGCGCTTTACC
TCTTTGAAGAGTACCAGCTTGGCGTGCGTGGGAACAGGACCACCATACCC
CTCCTCACCGCGGTCGCCCGCTCCTTGGATGCAGCCCTCCCTCCCTCCCG
CCCTCGCGCCCCGCCTCCTTTTCCCCTGCCCACGGCCATCCTCCACGTCC
TTTACCGACGCCACGCCCCCCTCACGCCTCTCCGCTCCCATTGGTCGTAC
CGGTACCCATCCTCCCTTGACCTTCACCTCCTCACCCGACCCTTGGCCCA
GGCCGCGGTCCACACGGCTTTGGAGGAGATACGGCAAGGTGAAGTCACCT
TAGCACCGGAAGGGCTGCAGATCATCGTGGGGAAAAGCAGTCAGGTCGTG
CGGGGGGGAGTGAAGGAGGCCTTGGGCGAAGAGTGCCGCCCGCCTCTGGA
AGTGGAAGAGGTGGGGGGAAACGATGGGAGGTTGCTGGTGTCATTGGCGA
GTGTGAATGCTTGGTTGGCGCGACAAGGGGAGGGGGAGGGAGGAGGGGAC
GGGAAGGCGGGGGGGAGGAAGGAGGCGAAAGTGAACCCGGCGTACACCTT
GGAGACGCCGAGGGGATGA
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Synonyms
Publications