rna9504, rna9504 (mRNA) Nannochloropsis gaditana

Overview
Namerna9504
Unique Namerna9504
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length764
Alignment locationKK037254.1:14857..16007 +

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Properties
Property NameValue
ProductZinc finger, RING/FYVE/PHD-type
Orig transcript idgnl|cribi|Naga_102098g1.4968.mrna
Orig protein idgnl|cribi|Naga_102098g1.4968
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:14857..16007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102098g1gene9225Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9504rna9504-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21200.1cds9473Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9504 ID=rna9504|Name=rna9504|organism=Nannochloropsis gaditana|type=mRNA|length=764bp
CAGGACACGGAAACCGATGCCACAGGAAAGGCGGCATCTCCTTTTTGCTG
CTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGGGCATACTACCATG
GCGTCTTCCGCGTCTCTCTCTGGCGCTTCTAGGACTGACATCTTTCCCCG
CCAGGGGGGTAGTGCCACGAGGGCCGCGCCGCTTCCTAATGACGACACCG
AAGTACTGGACGTGGCTATCGTCGGCGGCGGTATTGGTGGCCTGGCAACT
GCCCTGGCGCTTCAGAAATTGGCACCCGAACTCAGCTTTTGCCTGTATGA
ACGCTCGCCAACCCTCCGGGGGGGGGAAGGAACCGCCTTGACGCTCTGGC
CGAATGGACTCTCGGCGTTGGGGGCGATCGACGCGGCTTTGCTCGCGCAG
GTGAAGTCCGCGGGGAGTGTCATCCGAAAGCAGACCTTTAATACGCCCGC
ACGGAACGTCACCGAGGACACAGGCACCTTCTCCTCCCTGTACGGAGAAC
CCCTCCTCTCCGTCTTCTGGAAACACTTGCACGGTCAGCTGGCCCGTGCG
GTGCGGGAGGGCGGGAAAGAGGGCGGGAAAGAGGGCGGGGGGGACGACCG
GGGCAGCATCCTCATGGGAAAGGCCTGCGTGGATGTGGTGCCTTTCCCGG
AGGGCGGGAGGGAGGGCGGGCGGGTGCAGCTTCTCTTTGCGGACGGCTCC
ACGGTCCGAGCGCAGTGCGTCTTGGCTGCCGACGGGGTCCACTCAGGTCG
GGGGGAGGCGGAGG
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protein sequence of rna9504

>rna9504-protein ID=rna9504-protein|Name=rna9504|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
PNPSLSPSILPTFHRPRASVSSSSSSSSSPSAKFNRRAPTSSRSPSNLIT
SLRRPAHCVRGASARKLSHEGGSSREERVILSGLMKRTMGWEVDDAGGGD
GSYEDDLPWEVRGSEEEGDAEEEEEEEEGEEEEEDEEGELSDFIASEDEE
EEEGEGGKEGGRPWMHDGVRCLCGARAFGRGQEGREGGRERGRDGGIKVQ
CTNEECAYWGHGSCYGIEEEEEVPLDFKCYHCRPSPRQGGREDVPAAVMG
KDGRLMDLYRLLQAGVSREAFGKALRRVRRREGGREGGRGPWWEIPAQYR
ASGHTVLMEAAALGRVEEVRLLTEAEREEEGGGRRRRGGGERDW
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mRNA from alignment at KK037254.1:14857..16007+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9504 ID=rna9504|Name=rna9504|organism=Nannochloropsis gaditana|type=mRNA|length=1151bp|location=Sequence derived from alignment at KK037254.1:14857..16007+ (Nannochloropsis gaditana)
CCCAATCCGTCTCTCTCTCCGTCTATTCTTCCTACTTTCCACCGTCCTCg
agcctccgtctcctcctcctcctcctcctcctcctcgccctcagcAAAGT
TCAACCGACGCGCTCCTACTTCCTCTCGTTCCCCTTCCAATctcatcacc
tccctccgccgtcccGCTCATTGCGTGCGAGGAGCGTCTGCCCGCAAGCT
TTCGCATGAAGGTGGCTCCAGTCGAGAGGAGAGGGTCATCCTGAGTGGCC
TCATGAAGCGGACGATGGGTTGGGAAGTGGATgatgcggggggaggagac
gggagCTACGAGGATGACCTCCCGTGGGAGGTGCGGGGaagtgaggaaga
aggggatgcggaggaggaggaggaggaagaggagggggaggaggaggagg
aggacgaggagggggaactgTCAGATTTCATTGCTtcggaagacgaggag
gaggaggagggggagggagggaaagagggagggcggccatGGATGCACGA
CGGGGTGCGATGCCTCTGTGGGGCGCGGGCGTTCGGCCGTGgtcaggagg
ggagggaaggggggagggagagagggagggatggagggataAAGGTGCAG
TGCACGAACGAGGAGTGTGCCTATTGGGGGCACGGTTCCTGTTACGggat
tgaggaggaggaggaggtgccgtTGGACTTCAAATGCTATCActgccgtc
cttccccccgacaGGGCGGGCGCGAAGACGTGCCCGCCGcggtgatgggg
aaggacgggaggttgATGGACTTGTATCGGCTGTTGCAGGCGGGGGTGTC
GAGGGAGGCGTTTGGGAAAGCCTTGAGGCGggtgaggaggcgggagggag
gaagggagggagggaggggtcccTGGTGGGAAATACCGGCGCAGTACCGT
GCGAGTGGGCACACGGTCTTGATGGAGGCAGCCGCCTTGGggcgagtgga
ggaggtgcggcTCCTGACcgaagcggagagggaggaggagggaggaggga
ggaggaggaggggggggggagaaagggattgGTAGGTTCGGTGGATGCGG
AGGGGCGGACGGCGGCGCATCATGCGCTGAAAAAATCTCGACGtgcaaga
ggaggtggtggtggaggtgttgAAAGGGTTGATGGATtcggacggaggag
g
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Coding sequence (CDS) from alignment at KK037254.1:14857..16007+

>rna9504 ID=rna9504|Name=rna9504|organism=Nannochloropsis gaditana|type=CDS|length=1035bp|location=Sequence derived from alignment at KK037254.1:14857..16007+ (Nannochloropsis gaditana)
CCCAATCCGTCTCTCTCTCCGTCTATTCTTCCTACTTTCCACCGTCCTCg
agcctccgtctcctcctcctcctcctcctcctcctcgccctcagcAAAGT
TCAACCGACGCGCTCCTACTTCCTCTCGTTCCCCTTCCAATctcatcacc
tccctccgccgtcccGCTCATTGCGTGCGAGGAGCGTCTGCCCGCAAGCT
TTCGCATGAAGGTGGCTCCAGTCGAGAGGAGAGGGTCATCCTGAGTGGCC
TCATGAAGCGGACGATGGGTTGGGAAGTGGATgatgcggggggaggagac
gggagCTACGAGGATGACCTCCCGTGGGAGGTGCGGGGaagtgaggaaga
aggggatgcggaggaggaggaggaggaagaggagggggaggaggaggagg
aggacgaggagggggaactgTCAGATTTCATTGCTtcggaagacgaggag
gaggaggagggggagggagggaaagagggagggcggccatGGATGCACGA
CGGGGTGCGATGCCTCTGTGGGGCGCGGGCGTTCGGCCGTGgtcaggagg
ggagggaaggggggagggagagagggagggatggagggataAAGGTGCAG
TGCACGAACGAGGAGTGTGCCTATTGGGGGCACGGTTCCTGTTACGggat
tgaggaggaggaggaggtgccgtTGGACTTCAAATGCTATCActgccgtc
cttccccccgacaGGGCGGGCGCGAAGACGTGCCCGCCGcggtgatgggg
aaggacgggaggttgATGGACTTGTATCGGCTGTTGCAGGCGGGGGTGTC
GAGGGAGGCGTTTGGGAAAGCCTTGAGGCGggtgaggaggcgggagggag
gaagggagggagggaggggtcccTGGTGGGAAATACCGGCGCAGTACCGT
GCGAGTGGGCACACGGTCTTGATGGAGGCAGCCGCCTTGGggcgagtgga
ggaggtgcggcTCCTGACcgaagcggagagggaggaggagggaggaggga
ggaggaggaggggggggggagaaagggattgGTAG
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Synonyms
Publications