EWM21200.1, cds9473 (CDS) Nannochloropsis gaditana

Overview
NameEWM21200.1
Unique Namecds9473
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:14857..15891 +

Link to JBrowse

Properties
Property NameValue
Start range14857
Start range.
Protein idEWM21200.1
ProductZinc finger, RING/FYVE/PHD-type
Partialtrue
Orig transcript idgnl|cribi|Naga_102098g1.4968.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:14857..15891 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
IPR001965Znf_PHD
Homology
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BLAST of EWM21200.1 vs. NCBI_GenBank
Match: gi|585101290|gb|EWM21200.1| (Zinc finger, RING/FYVE/PHD-type, partial [Nannochloropsis gaditana])

HSP 1 Score: 671.774 bits (1732), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 
Query:    1 PNPSLSPSILPTFHRPRASVSSSSSSSSSPSAKFNRRAPTSSRSPSNLITSLRRPAHCVRGASARKLSHEGGSSREERVILSGLMKRTMGWEVDDAGGGDGSYEDDLPWEVRGSEEEGDAEEEEEEEEGEEEEEDEEGELSDFIASEDEEEEEGEGGKEGGRPWMHDGVRCLCGARAFGRGQEGREGGRERGRDGGIKVQCTNEECAYWGHGSCYGIEEEEEVPLDFKCYHCRPSPRQGGREDVPAAVMGKDGRLMDLYRLLQAGVSREAFGKALRRVRRREGGREGGRGPWWEIPAQYRASGHTVLMEAAALGRVEEVRLLTEAEREEEGGGRRRRGGGERDW 344
            PNPSLSPSILPTFHRPRASVSSSSSSSSSPSAKFNRRAPTSSRSPSNLITSLRRPAHCVRGASARKLSHEGGSSREERVILSGLMKRTMGWEVDDAGGGDGSYEDDLPWEVRGSEEEGDAEEEEEEEEGEEEEEDEEGELSDFIASEDEEEEEGEGGKEGGRPWMHDGVRCLCGARAFGRGQEGREGGRERGRDGGIKVQCTNEECAYWGHGSCYGIEEEEEVPLDFKCYHCRPSPRQGGREDVPAAVMGKDGRLMDLYRLLQAGVSREAFGKALRRVRRREGGREGGRGPWWEIPAQYRASGHTVLMEAAALGRVEEVRLLTEAEREEEGGGRRRRGGGERDW
Sbjct:    1 PNPSLSPSILPTFHRPRASVSSSSSSSSSPSAKFNRRAPTSSRSPSNLITSLRRPAHCVRGASARKLSHEGGSSREERVILSGLMKRTMGWEVDDAGGGDGSYEDDLPWEVRGSEEEGDAEEEEEEEEGEEEEEDEEGELSDFIASEDEEEEEGEGGKEGGRPWMHDGVRCLCGARAFGRGQEGREGGRERGRDGGIKVQCTNEECAYWGHGSCYGIEEEEEVPLDFKCYHCRPSPRQGGREDVPAAVMGKDGRLMDLYRLLQAGVSREAFGKALRRVRRREGGREGGRGPWWEIPAQYRASGHTVLMEAAALGRVEEVRLLTEAEREEEGGGRRRRGGGERDW 344
The following BLAST results are available for this feature:
BLAST of EWM21200.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101290|gb|EWM21200.1|0.000e+0100.00Zinc finger, RING/FYVE/PHD-type, partial [Nannochl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9504rna9504Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications