rna95, rna95 (mRNA) Nannochloropsis gaditana

Overview
Namerna95
Unique Namerna95
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length306
Alignment locationCM002455.1:258513..259658 +

Link to JBrowse

Properties
Property NameValue
Product60s ribosome subunit biogenesis protein nip7
Orig transcript idgnl|cribi|Naga_100033g20.8417.mrna
Orig protein idgnl|cribi|Naga_100033g20.8417
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:258513..259658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g20gene93Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna95rna95-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30578.1cds95Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna95 ID=rna95|Name=rna95|organism=Nannochloropsis gaditana|type=mRNA|length=306bp
ATGATATTCCTGAGCAGAGCGGGTCTGCTTTGTGGATTCCCCTACAGCAA
CAAGAGGCAGTGGATACTAAATAGTTGGCTCCATTTCACGCCTTCACACG
CCCACTTTCACGACAACTTGCCGCCACCATATAAGATATCGAGATTAACT
TCTGGCCACTTTGTCAATGGCATAGCGCTTAATCGATCAAAAATAGCACG
GGGAGAAGAATATCGCGATCATTTGGTTGCCGTTTCCTCTATTACGCCTT
TGGGGGGTCCACGGTTCACGATCGTCGAGACACACCATTTTCCCTATCCG
GCCTGA
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protein sequence of rna95

>rna95-protein ID=rna95-protein|Name=rna95|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSER
MMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVK
PQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPT
DVCKDLDPGANVVLHQGDVGEYLRVEDELS
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mRNA from alignment at CM002455.1:258513..259658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna95 ID=rna95|Name=rna95|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp|location=Sequence derived from alignment at CM002455.1:258513..259658+ (Nannochloropsis gaditana)
TCTAGACAGGCGCTTCGGTTTAGTCgacctcctcatcccctcgcCTTAGC
CTTCAAGTCTTGCATCAGTTTATATTTGGTAACACTGTACGACCACGACT
TTTGGATTGAAAAAAGGTTGAACACATGCGTCCTCTTTCGGAAGATGAGA
CCCGGAAGGTTTTTGAACGCCTCGCAAAGTAGTAAGTACACGGCCCTGCC
ATCCGAATCCTTTCTCCTATTAATCCATCCCACTTCCTCTTTGTATTCGA
CTTTCTTCCGCTTGCTTTTTTGATCCTTCAAGCGTCGGTGGCAATTTAGA
GCAGCTTGTCAATCGCCCGGATGAACGGTATTGCTTCCGGTACATGGACC
AGCGGGTCTACTACGTGAGCGAACGCATGATGAAAATCGCCACAAACTTT
GGCCGGGAGCACTTGCTATCAATCGGGACGTGCGTGGGACGCTTTACGAA
GGTAGCCATTTTTTGCCACTTCTCGCCTTTCTCTCGTTCTACGTGTCTGT
CGACTGAGAATGGTTTCCCCGTTACGATTGGATTGACAATCAACCCCTAA
CACCGTGATGCCGTGCCCTCTGGCTTCCTAACCTTCCACAGTCGGAAAAA
TTCCATATCTACATCACTTTCTTGGACTACCTGGCTCAGTACGCATCCTA
CAAGGTATGGGTGAAGCCGCAAAGTGAGATGGGGTTCCTATACGGCAACA
ACATCATCAAGTCCGGCctggggaggatgacggaagGGATCCCCCAGTAC
GCGGGTGTGGTGGTGTACTCCATGACGGACATCCCCCTGGGGTTCGGGGT
TGCGGCACAGCCCACGGACGTGTGCAAAGACCTGGATCCTGGGGCCAACG
TGGTGCTGCACCAAGGGGACGTTGGCGAGTACCTGCGCGTGGAAGACGAG
CTCTCGTGATCgcgatgaggatggaaggggagtgatgagcgtggaaggga
aaTATTTCTGAGGGTGGCTAACAAGAGCCGATGGGAGGTGTATTCgggtg
acggaggggaagagggaggccagatcggggagggaaaatgtaCATATGTG
CGAAGCTGTGCTCGGCACTGTCCAAAAGGTGCCGCCTGGGGGATGGCGTC
AGCGGCCTACGAAGGGAGGATAAAGGGAGACAGCGCGGAGAAAAGT
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Coding sequence (CDS) from alignment at CM002455.1:258513..259658+

>rna95 ID=rna95|Name=rna95|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at CM002455.1:258513..259658+ (Nannochloropsis gaditana)
ATGCGTCCTCTTTCGGAAGATGAGACCCGGAAGGTTTTTGAACGCCTCGC
AAAGTACGTCGGTGGCAATTTAGAGCAGCTTGTCAATCGCCCGGATGAAC
GGTATTGCTTCCGGTACATGGACCAGCGGGTCTACTACGTGAGCGAACGC
ATGATGAAAATCGCCACAAACTTTGGCCGGGAGCACTTGCTATCAATCGG
GACGTGCGTGGGACGCTTTACGAAGTCGGAAAAATTCCATATCTACATCA
CTTTCTTGGACTACCTGGCTCAGTACGCATCCTACAAGGTATGGGTGAAG
CCGCAAAGTGAGATGGGGTTCCTATACGGCAACAACATCATCAAGTCCGG
CctggggaggatgacggaagGGATCCCCCAGTACGCGGGTGTGGTGGTGT
ACTCCATGACGGACATCCCCCTGGGGTTCGGGGTTGCGGCACAGCCCACG
GACGTGTGCAAAGACCTGGATCCTGGGGCCAACGTGGTGCTGCACCAAGG
GGACGTTGGCGAGTACCTGCGCGTGGAAGACGAGCTCTCGTGAATGCGTC
CTCTTTCGGAAGATGAGACCCGGAAGGTTTTTGAACGCCTCGCAAAGTAC
GTCGGTGGCAATTTAGAGCAGCTTGTCAATCGCCCGGATGAACGGTATTG
CTTCCGGTACATGGACCAGCGGGTCTACTACGTGAGCGAACGCATGATGA
AAATCGCCACAAACTTTGGCCGGGAGCACTTGCTATCAATCGGGACGTGC
GTGGGACGCTTTACGAAGTCGGAAAAATTCCATATCTACATCACTTTCTT
GGACTACCTGGCTCAGTACGCATCCTACAAGGTATGGGTGAAGCCGCAAA
GTGAGATGGGGTTCCTATACGGCAACAACATCATCAAGTCCGGCctgggg
aggatgacggaagGGATCCCCCAGTACGCGGGTGTGGTGGTGTACTCCAT
GACGGACATCCCCCTGGGGTTCGGGGTTGCGGCACAGCCCACGGACGTGT
GCAAAGACCTGGATCCTGGGGCCAACGTGGTGCTGCACCAAGGGGACGTT
GGCGAGTACCTGCGCGTGGAAGACGAGCTCTCGTGAATGCGTCCTCTTTC
GGAAGATGAGACCCGGAAGGTTTTTGAACGCCTCGCAAAGTACGTCGGTG
GCAATTTAGAGCAGCTTGTCAATCGCCCGGATGAACGGTATTGCTTCCGG
TACATGGACCAGCGGGTCTACTACGTGAGCGAACGCATGATGAAAATCGC
CACAAACTTTGGCCGGGAGCACTTGCTATCAATCGGGACGTGCGTGGGAC
GCTTTACGAAGTCGGAAAAATTCCATATCTACATCACTTTCTTGGACTAC
CTGGCTCAGTACGCATCCTACAAGGTATGGGTGAAGCCGCAAAGTGAGAT
GGGGTTCCTATACGGCAACAACATCATCAAGTCCGGCctggggaggatga
cggaagGGATCCCCCAGTACGCGGGTGTGGTGGTGTACTCCATGACGGAC
ATCCCCCTGGGGTTCGGGGTTGCGGCACAGCCCACGGACGTGTGCAAAGA
CCTGGATCCTGGGGCCAACGTGGTGCTGCACCAAGGGGACGTTGGCGAGT
ACCTGCGCGTGGAAGACGAGCTCTCGTGA
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Synonyms
Publications