EWM30578.1, cds95 (CDS) Nannochloropsis gaditana

Overview
NameEWM30578.1
Unique Namecds95
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:258638..258693 +
Alignment locationCM002455.1:258795..258963 +
Alignment locationCM002455.1:259104..259421 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30578.1
Product60s ribosome subunit biogenesis protein nip7
Orig transcript idgnl|cribi|Naga_100033g20.8417.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:258638..258693 +
CM002455.1supercontigCM002455.1:258795..258963 +
CM002455.1supercontigCM002455.1:259104..259421 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0042255ribosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR016686Ribosomal_synth_fac_NIP7
IPR015947PUA-like_domain
IPR005155Rbsml_synth_fac_NIP7-like
IPR002478PUA
Homology
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|553179417|ref|XP_005852699.1| (60s ribosome subunit biogenesis protein nip7-like protein [Nannochloropsis gaditana CCMP526] >gi|422295833|gb|EKU23132.1| 60s ribosome subunit biogenesis protein nip7-like protein [Nannochloropsis gaditana CCMP526] >gi|585113245|gb|EWM30578.1| 60s ribosome subunit biogenesis protein nip7 [Nannochloropsis gaditana])

HSP 1 Score: 375.941 bits (964), Expect = 4.691e-132
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDELS 180
            MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDELS
Sbjct:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDELS 180          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|1214688274|gb|OWZ04263.1| (60S ribosome subunit biogenesis protein NIP7 [Phytophthora megakarya])

HSP 1 Score: 276.559 bits (706), Expect = 1.168e-92
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL++DE   VFE+++KY+G N++ LV RPDE+YCFR     VYY SE++M+ +TN G + L+SIGT VG+ TKS+KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM DIPLGFG+AAQ T++CKDL+P A VVLHQ D+GEYLRVEDE+
Sbjct:    1 MRPLTDDEMTTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNVGTDELMSIGTAVGKLTKSKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATEMCKDLEPTAYVVLHQADIGEYLRVEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|1173960582|gb|OQS06696.1| (60S ribosome subunit biogenesis protein NIP7 [Thraustotheca clavata])

HSP 1 Score: 276.559 bits (706), Expect = 1.194e-92
Identity = 122/179 (68.16%), Postives = 152/179 (84.92%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL++DE + VFE+++KY+G N++ LV RPDE++CFR     VYYVSE++M+ ATN G + LLS+GT VG+ TK++KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM D+PLGFG+AAQ T++CKDLDP   VVLHQ D+GEYLRVEDE+
Sbjct:    1 MRPLTDDEMKTVFEKISKYIGRNVQHLVVRPDEKFCFRLHGDIVYYVSEKLMRQATNIGTDQLLSLGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDVPLGFGIAAQATEMCKDLDPTGYVVLHQADIGEYLRVEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|695434854|ref|XP_009531520.1| (hypothetical protein PHYSODRAFT_352017 [Phytophthora sojae] >gi|348674272|gb|EGZ14091.1| hypothetical protein PHYSODRAFT_352017 [Phytophthora sojae])

HSP 1 Score: 276.559 bits (706), Expect = 1.194e-92
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL++DE   VFE+++KY+G N++ LV RPDE+YCFR     VYY SE++M+ +TN G + LLSIGT VG+ TK++KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM DIPLGFG+AAQ T++CKDL+P A VVLHQ D+GEYLRVEDE+
Sbjct:    1 MRPLTDDEMTTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNVGSDELLSIGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATEMCKDLEPTAYVVLHQADIGEYLRVEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|1173942305|gb|OQR91329.1| (60S ribosome subunit biogenesis protein NIP7 [Achlya hypogyna])

HSP 1 Score: 276.174 bits (705), Expect = 1.392e-92
Identity = 122/179 (68.16%), Postives = 152/179 (84.92%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL+++E + VFE+++KY+G N++ LV RPDE++CFR     VYYVSE++M+ ATN G E LLS+GT VG+ TK++KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM D+PLGFG+AAQ T++CKDLDP   VVLHQ D+GEYLRVEDE+
Sbjct:    1 MRPLTDEEMKTVFEKISKYIGRNVQHLVVRPDEKFCFRLHGDIVYYVSEKLMRQATNIGTEQLLSLGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDVPLGFGIAAQATEMCKDLDPTGYVVLHQADIGEYLRVEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|970648850|gb|KUF88274.1| (hypothetical protein AM588_10002002 [Phytophthora nicotianae] >gi|970664817|gb|KUG01637.1| 60S ribosome subunit biogenesis protein NIP7 [Phytophthora nicotianae])

HSP 1 Score: 276.174 bits (705), Expect = 1.392e-92
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL++DE   VFE+++KY+G N++ LV RPDE+YCFR     VYY SE++M+ +TN G + LLSIGT VG+ TK++KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM DIPLGFG+AAQ T++CKDL+P A VVLHQ D+GEYLRVEDE+
Sbjct:    1 MRPLTDDEMTTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNVGTDELLSIGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATEMCKDLEPTAYVVLHQADIGEYLRVEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|675169597|ref|XP_008893683.1| (hypothetical protein PPTG_02043 [Phytophthora parasitica INRA-310] >gi|566021750|gb|ETI44661.1| hypothetical protein F443_10651 [Phytophthora parasitica P1569] >gi|567959066|gb|ETK84646.1| hypothetical protein L915_10411 [Phytophthora parasitica] >gi|567987787|gb|ETL38082.1| hypothetical protein L916_10305 [Phytophthora parasitica] >gi|568017007|gb|ETL91184.1| hypothetical protein L917_10243 [Phytophthora parasitica] >gi|568047430|gb|ETM44511.1| hypothetical protein L914_10273 [Phytophthora parasitica] >gi|568107349|gb|ETN21979.1| hypothetical protein PPTG_02043 [Phytophthora parasitica INRA-310] >gi|570325362|gb|ETO73310.1| hypothetical protein F444_10751 [Phytophthora parasitica P1976] >gi|570949213|gb|ETP14470.1| hypothetical protein F441_10591 [Phytophthora parasitica CJ01A1] >gi|570982423|gb|ETP42551.1| hypothetical protein F442_10551 [Phytophthora parasitica P10297])

HSP 1 Score: 276.559 bits (706), Expect = 2.384e-92
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL++DE   VFE+++KY+G N++ LV RPDE+YCFR     VYY SE++M+ +TN G + LLSIGT VG+ TK++KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM DIPLGFG+AAQ T++CKDL+P A VVLHQ D+GEYLRVEDE+
Sbjct:   28 MRPLTDDEMTTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNVGTDELLSIGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATEMCKDLEPTAYVVLHQADIGEYLRVEDEM 206          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|669145786|ref|XP_008608455.1| (60S ribosome subunit biogenesis protein NIP7 [Saprolegnia diclina VS20] >gi|813187768|ref|XP_012207463.1| 60S ribosome subunit biogenesis protein NIP7 [Saprolegnia parasitica CBS 223.65] >gi|530739886|gb|EQC38128.1| 60S ribosome subunit biogenesis protein NIP7 [Saprolegnia diclina VS20] >gi|641527501|gb|KDO21784.1| 60S ribosome subunit biogenesis protein NIP7 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 274.633 bits (701), Expect = 5.787e-92
Identity = 121/179 (67.60%), Postives = 152/179 (84.92%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL+++E + VFE+++KY+G N++ LV RPDE++CFR     VYYVSE++M+ ATN G + LLS+GT VG+ TK++KFH+ ITFLDYLAQYA YKVW+KP SEM FLYGNN++KSGLGR+TEG PQYAGVVVYSM D+PLGFG+AAQ T++CKDLDP   VVLHQ D+GEYLRVEDE+
Sbjct:    1 MRPLTDEEMKTVFEKISKYIGRNVQHLVVRPDEKFCFRLHGDIVYYVSEKLMRQATNIGTDQLLSLGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDVPLGFGIAAQATEMCKDLDPTGYVVLHQADIGEYLRVEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|325190344|emb|CCA24818.1| (60S ribosome subunit biogenesis protein NIP7 putati [Albugo laibachii Nc14] >gi|325191835|emb|CCA26308.1| 60S ribosome subunit biogenesis protein NIP7 putati [Albugo laibachii Nc14])

HSP 1 Score: 273.863 bits (699), Expect = 1.288e-91
Identity = 120/179 (67.04%), Postives = 151/179 (84.36%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL+++E + VFE+++KY+G N++ LV RPDERYCFR  +  VYY SER+M+ ATN   E LLS+GTCVG+FTK +KF++ ITFLD++AQYA YKVWVKP SEM FLYGNN++KSGLGR+TEG PQYAGV+VYSM D+ LGFG+AAQ T++CKDL+P A VVLHQ D+GEYLR EDE+
Sbjct:    1 MRPLTDEELKTVFEKISKYIGANVQLLVTRPDERYCFRLHNDFVYYCSERLMRQATNISSEQLLSLGTCVGKFTKGKKFYLRITFLDHMAQYAKYKVWVKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVIVYSMNDLALGFGIAAQATEMCKDLEPTAYVVLHQADIGEYLRTEDEM 179          
BLAST of EWM30578.1 vs. NCBI_GenBank
Match: gi|299469788|emb|CBN76642.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 273.863 bits (699), Expect = 1.391e-91
Identity = 123/179 (68.72%), Postives = 151/179 (84.36%), Query Frame = 0
Query:    1 MRPLSEDETRKVFERLAKYVGGNLEQLVNRPDERYCFRYMDQRVYYVSERMMKIATNFGREHLLSIGTCVGRFTKSEKFHIYITFLDYLAQYASYKVWVKPQSEMGFLYGNNIIKSGLGRMTEGIPQYAGVVVYSMTDIPLGFGVAAQPTDVCKDLDPGANVVLHQGDVGEYLRVEDEL 179
            MRPL++DET+ +FE+LA Y+G N+EQL+NRPDE+ CFR    RVYYVSER+M+ AT+  R+ LLS+GTC G+FTKS KF ++IT LDY++QYA YKVWVKP +EM FLYGN++ KSGLGR+TE  P+Y G VVYSM+D+PLGFGVAAQPT+ CKDLDP A VVLHQ DVGEYLRVED+L
Sbjct:    1 MRPLTDDETKVLFEKLANYIGKNIEQLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDL 179          
The following BLAST results are available for this feature:
BLAST of EWM30578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179417|ref|XP_005852699.1|4.691e-132100.0060s ribosome subunit biogenesis protein nip7-like ... [more]
gi|1214688274|gb|OWZ04263.1|1.168e-9268.7260S ribosome subunit biogenesis protein NIP7 [Phyt... [more]
gi|1173960582|gb|OQS06696.1|1.194e-9268.1660S ribosome subunit biogenesis protein NIP7 [Thra... [more]
gi|695434854|ref|XP_009531520.1|1.194e-9268.72hypothetical protein PHYSODRAFT_352017 [Phytophtho... [more]
gi|1173942305|gb|OQR91329.1|1.392e-9268.1660S ribosome subunit biogenesis protein NIP7 [Achl... [more]
gi|970648850|gb|KUF88274.1|1.392e-9268.72hypothetical protein AM588_10002002 [Phytophthora ... [more]
gi|675169597|ref|XP_008893683.1|2.384e-9268.72hypothetical protein PPTG_02043 [Phytophthora para... [more]
gi|669145786|ref|XP_008608455.1|5.787e-9267.6060S ribosome subunit biogenesis protein NIP7 [Sapr... [more]
gi|325190344|emb|CCA24818.1|1.288e-9167.0460S ribosome subunit biogenesis protein NIP7 putat... [more]
gi|299469788|emb|CBN76642.1|1.391e-9168.72conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna95rna95Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications