|
|
Properties
| Property Name | Value |
|---|
| Product | snf7 family protein |
| Orig transcript id | gnl|cribi|Naga_100022g65.832.mrna |
| Orig protein id | gnl|cribi|Naga_100022g65.832 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:806675..810572 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna949 ID=rna949|Name=rna949|organism=Nannochloropsis gaditana|type=mRNA|length=2463bp
ATGAAATTAATGGATGGAGCATGGCTTCTCACAATCATGACATGGTCGTA
CTTCATGCCTGGATTTGCGGCATTTTTACACCGTCATACCCATTCGGTCA
AAGTCGATTGTCTTATTGCGAAGCATATGCAGGGCTGGACATTTTCTCAT
TTTGGAAGGTTTCTCAAGGTACCTTGTCGAATTAACACTGGGCTTCAGCT
CATGAAAAGAGATGAGCTCATTTTGGGCATCAACAAATACTCTCATGATG
TATCATGTGCAATCGTGTCCGCCAAGACTGGAGATTTGCTTTTCATGACC
GAAAAGGAGCGCGTCGTCCGCCGGAAGCACGCGGCTGGAGATTGTGCTGA
CCTGGTAGAATTTGCTTTAGCTTCTATCCAGCACGAGATCGACGACGTGA
AAATGGTGATTCAGCAGAACCACCACTGGCGGGTCGCACACTTTGAAGAA
CGCCTTCCTTGGGCATGCGCTCTCGAGCACTATCCGCCAAGTTACATGGA
AGAGGCTTCTACTTTCGCCTCATTGAATCCGAGCTGTCGACATGAGCTAA
GCCATCATCTAGCTCACGCATGGTCTGTGTTCCCGCAAGCCCCTTTCGAG
CGAGGGCTCATCGTTGTAATGGACGGAATGGGGGAGCAGCAGAAGTCGAT
GGCTCTAGGATTGAGGGACGAAGATTTCGGGTACACGAGTGACTTATATT
TACCTCGGCACGCTAAATTTATGCAAGTGCCAGCGAAGTTGGATCCTCTG
CTTGATTACCGCGAAGCAGAAAGTGCGTATTACTTCGATGGAGATAATCT
TACTCTCGTGTTCAAGCGCTACACAATGGAAGCGAGCCCCTCAGAGCTAT
ATAATCACGGATTTGAAAACATGGAATCAATTGGTGCCGTGTATTCTCGC
ATCTCCAGCCATATTTTCGGTGATTGGAATGCTTGTGGGAAAGTCATGGG
TCTGTCGAGCTTTGGAAATGCTGACGAAGCGGCGCGATTGCCCCGTTTTA
TGGAAGGAAATTTGGCGTCGGAGACGTTTCGCATTGATTGGAAGGCATTA
CACTCCTTGCCGCAAGCAAATGAATGGCATGAAGAAGATGAGAAAAAAAC
AAAATGCTATGCGCACATAGCGCGCCGCGTTCAGGAAGATTTGGAGAATG
TGGCGATGTCTTGGATCCGTTACCTCAAGCAAGCAACAGGAGCTGCGAAC
TTATGCATTTGTGGTGGCGTAGGTCAAAATAGTGTCTTAAACGGTCGTAT
TATTAGAGAACTAGGATTTGAAGACGTTTTTATTCCACCCTATCCCGGTG
ATGAAGGCATTTCCATCGGATGTGCGCTATGGGGCTTTGCTGCCGCCACA
GCGGCCGGTGGCTTCGCAGTATCCTCTTCACGTCACAGAGGTTCGGTGAT
GGCGGTGCGCCCTGCCCGACGATATCGTCCCCTGTCTCCTTACCAGGGAA
AAGCATACAGTGAAGAGGACATTGAAATTGGCGCCTTAGCGACATGGTCG
CCATTCCTGCACATAGAGCGCAAACGAGATATGAGTACGGTGGTGAATGC
CACGGCGCACGCTTTAGCAGACGGAAAGATTGTGGCCTGGTTCCAAGGTC
GGAGTGAATGTGGGCCGCGGGCGTTGGGCCATCGTTCATTGCTAGCAGAT
CCACGAAATGCATCCATGCACGCTTATATGAACAAGGTGAAGAAGAGGGA
AGCTTTTCGTCCTTTCGCACCTTCAGTATTAGCTGAGGCGGTCTCGGACT
GGTTTGAAGTTGGTTTCCAAGGCAAAGCAGGCACGCTCCCCGAAGAGGAC
AGCTCAAAGTCGCCTTTCATGTCCTGCACACTTCCTGTTAGTGTCTCGCG
TCGGAACCGAGTTCCGGCAATTTGTCATGTTGATGGCACTGCACGGCTAC
AAACAGTGCGACTGGATGATGATCTCTGGTACTATCGACTACTTAAAGCC
TTCTTCGAGCTTACTGGTGTGCCTATGCTACTTAATACAAGTTTTAACAC
ACTCAGGGCCGAGCCTATTGTCGAAACTCCTTCGGACGCAATCCGCTCCT
TTCTGGCCACAGAGGGTGCTATCGACATGCTTGTTATGGGCTGCTTCCTC
GTTAAGCGCCGACCATTTCCTTTGGACGCATCAAATGTAGACTATGCCCT
CTGTGTTGTGTGCAAAGCTGAAGGGGTTGTCTTGGAGGAAGTAATCTGTG
ATGCAGAGACGGGAAGTGCACACAGCGTCCGCGTTGCCCGAGGCAGTGAA
GATGGGACGCCTCAATGGATTGAGCTTGAAGGGGGGGAACTGGACCTAGT
GGTATGGCAGTTTGTGGATGGATTTAGTCCTATAGCCGACATAATGGACT
CAGTGCTGGAGCATCTGCAAGATGAGGAAAATGACACCGGCTTCCATGAA
GGTGATGTGGTAGCGTCATTTCGACGATTGTATTCACTTCAATTGATTCT
ATTCAAGGAATGA back to topprotein sequence of rna949 >rna949-protein ID=rna949-protein|Name=rna949|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEG
ARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVA
GMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQE
MVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALR
K back to topmRNA from alignment at CM002456.1:806675..810572- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna949 ID=rna949|Name=rna949|organism=Nannochloropsis gaditana|type=mRNA|length=3898bp|location=Sequence derived from alignment at CM002456.1:806675..810572- (Nannochloropsis gaditana)
TTCATTCGTTCATTCATACAATTATAAGAGCTTTGTGACGACCTAAAGCA
AAAACTTCGGGAATATTTTTTTAACGGGTCTCACGAGTCTGTTCAACTAG
CAACGTTGCCGTTTTCTGGCGCGCAGGGAGACCCTCTTCCCGTGAGCAGG
CGCATTGCAAAGGATGATAAAAACCAAAAATACGGCGTTTTATGCTATCA
AAATCCTCTGAACGATGTATATCAAGTTGAATGGCACATGCATGTCATTT
TAGTATATCAAGAACAATTTGTGACGTCCGACGTGACATGATCCGCCGTA
CCGCTTTGTGGGATGTTCCCGTCGCTATAGAGCCCGTCCGGGACCAGCCT
GGGACCGCTCCTTGCACCCTTTTCATGAGGCACCGGGCCGAGTTGTGGAG
GGCAAGATGTTGATAAGCAGACAATTTACGTAAGCATAGGACATTGGTGT
AAGTTTGGACCGCTTTGCTCAATGGCGACAGGGTCCTTGTGGACATGAGA
AGCAGTCTTGAAGTAACGCCGAGTAAGGAAGAAGGAACAGCCAGCTGCTG
TAGGCCGTCTCATTACGTTTTCCCCCGTGCACACGACAGCCAATTACTTT
GCGGCTATGGGCAATAAGCCATCACTCGAAGGTCAGTGCTTGTGCGAAAT
TGCTGGAAAATACAGTCGACCGGTTTTGTTAGCGGCCTCTCACACGAAGT
GCTTCTCTCACAGACCATCTGGTTAACTTGCGTCTCACCAGCAAGCAAAT
GGTGCGTGGATCCAAAAAATGCGAATCTAGTGAGAAAGATGCCAGAAACA
AGTTGAAGAAGGCGATACAGAGCCGTAATTTGGAAGGGGCACGCATTTAC
GCCCAGGTGAGATCGATTTCAGTAAATGACAAGAAGAAATAGGTTTTGAG
CTTATGCTCCACCATCACACAATTTTTATCCTGAAAAGAACGCCATTCGA
GAAAAAACACAAGCGCTAAACTATCTTCGATTATCGTCGAGAATAGATGC
AGTGGCGGCGCGCTTGGAGAGCGCGATACGAATGAAACAGGTTACGGGCG
CTATGGCTGGTATAGTTGCGGGCATGGATACGGCGCTTAAGGACATGGAC
GTTGAGAAGGTACGTACGGTACGCAGAATGTAGATACAGAAGAAGTCTAA
GCTCTCCAGTTTTATCCATATTCTTATTTCTTTCTCATCGCAGCTTGCAA
AAGTAATGGACCAATTTGAGAAGCAGTTTGAGGACACTGATGTTCGGACC
GGTTATTTAGAAGGCGCTATCGCCAGCACTACTGCCAGTGCAACACCTCA
GGAAATGGTTGATAGCCTTATTCAAGAGACTGCAGATGCCCATAACCTGG
AACTGGGTACTATGTTAGATAACGCTGGCATGGTGAGTGATAATCTACCT
GCCGTTGAGGCTCAAGCAACAAATAATCTGGAGCAGCGGTTTGAAGCATT
GCGAAAATAACGCTTCAAGGATTCAGTGTCTCGGATTGCAGGTAGTGCAC
GGGCATGCACGCTGTAAAATACGGTTTGGAAGTGGTAACGATGGGAATGT
GTAGATCAAAACAATCATCCCGAATAGAGGACCGAGCAAAAAGGAAGAAA
ACACGCATCATCTAGGGACCAGCATCTTAGCCTTGGTATTTTGCTCTGGG
GCCCCAATCTTCATTCCTTGAATAGAATCAATTGAAGTGAATACAATCGT
CGAAATGACGCTACCACATCACCTTCATGGAAGCCGGTGTCATTTTCCTC
ATCTTGCAGATGCTCCAGCACTGAGTCCATTATGTCGGCTATAGGACTAA
ATCCATCCACAAACTGCCATACCACTAGGTCCAGTTCCCCCCCTTCAAGC
TCAATCCATTGAGGCGTCCCATCTTCACTGCCTCGGGCAACGCGGACGCT
GTGTGCACTTCCCGTCTCTGCATCACAGATTACTTCCTCCAAGACAACCC
CTTCAGCTTTGCACACAACACAGAGGGCATAGTCTACATTTGATGCGTCC
AAAGGAAATGGTCGGCGCTTAACGAGGAAGCAGCCCATAACAAGCATGTC
GATAGCACCCTCTGTGGCCAGAAAGGAGCGGATTGCGTCCGAAGGAGTTT
CGACAATAGGCTCGGCCCTGAGTGTGTTAAAACTTGTATTAAGTAGCATA
GGCACACCAGTAAGCTCGAAGAAGGCTTTAAGTAGTCGATAGTACCAGAG
ATCATCATCCAGTCGCACTGTTTGTAGCCGTGCAGTGCCATCAACATGAC
AAATTGCCGGAACTCGGTTCCGACGCGAGACACTAACAGGAAGTGTGCAG
GACATGAAAGGCGACTTTGAGCTGTCCTCTTCGGGGAGCGTGCCTGCTTT
GCCTTGGAAACCAACTTCAAACCAGTCCGAGACCGCCTCAGCTAATACTG
AAGGTGCGAAAGGACGAAAAGCTTCCCTCTTCTTCACCTTGTTCATATAA
GCGTGCATGGATGCATTTCGTGGATCTGCTAGCAATGAACGATGGCCCAA
CGCCCGCGGCCCACATTCACTCCGACCTTGGAACCAGGCCACAATCTTTC
CGTCTGCTAAAGCGTGCGCCGTGGCATTCACCACCGTACTCATATCTCGT
TTGCGCTCTATGTGCAGGAATGGCGACCATGTCGCTAAGGCGCCAATTTC
AATGTCCTCTTCACTGTATGCTTTTCCCTGGTAAGGAGACAGGGGACGAT
ATCGTCGGGCAGGGCGCACCGCCATCACCGAACCTCTGCTCGCAGCAGTT
AAGTGTCAGGACGGGGTAATTTGCTTATTCTTTCATCGATCACGATTGTA
AGCAAAACTTGCTCTCTTTCCTTTAGCTTCTTACCTGTGACGTGAAGAGG
ATACTGCGAAGCCACCGGCCGCTGTGGCGGCAGCAAAGCCCCATAGCGCA
CATCCGATGGAAATGCCTTCATCACCGGGATAGGGTGGAATAAAAACGTC
TTCAAATCCTAGTTCTCTAATAATACGACCGTTTAAGACACTATTTTGAC
CTACGCCACCACAAATGCATAAGTTCGCAGCTCCTGTTGCTTGCTTGAGG
TAACGGATCCAAGACATCGCCACATTCTCCAAATCTTCCTGAACGCGGCG
CGCTATGTGCGCATAGCATTTTGTTTTTTTCTCATCTTCTTCATGCCATT
CATTTGCTTGCGGCAAGGAGTGTAATGCCTTCCAATCAATGCGAAACGTC
TCCGACGCCAAATTTCCTTCCATAAAACGGGGCAATCGCGCCGCTTCGTC
AGCATTTCCAAAGCTCGACAGACCCATGACTTTCCCACAAGCATTCCAAT
CACCGAAAATATGGCTGGAGATGCGAGAATACACGGCACCAATTGATTCC
ATGTTTTCAAATCCGTGATTATATAGCTCTGAGGGGCTGTGATGGTGATG
ATGATGACAGCCGATAAGGCAAGACATGTAAGATAAAATAGGGACCACGG
AGAAACAAGAAGCCACCTATACAAGCATTGCAACCGTAGTTTGTTGAGAA
ACAAATGCATATGATGTAGCGCATTTTCTAGACATTACTGATGGGAATAT
ATTCACCTCGCTTCCATTGTGTAGCGCTTGAACACGAGAGTAAGATTATC
TCCATCGAAGTAATACGCACTTTCTGCTTCGCGGTAATCAAGCAGAGGAT
CCAACTTCGCTGGCACTTGCATAAATTTAGCGTGCCGAGGTAAATATAAG
TCACTCGTGTACCCGAAATCTTCGTCCCTCAATCCTAGAGCCATCGACTT
CTGCTGCTCCCCCATTCCGTCCATTACAACGATGAGCCCTCGCTCGAAAG
GGGCTTGCGGGAACACAGACCATGCGTGAGCTAGATGATGGCTTAGCTCA
TGTCGACAGCTCGGATTCAATGAGGCGAAAGTAGAAGCCTCTTCCATG back to topCoding sequence (CDS) from alignment at CM002456.1:806675..810572- >rna949 ID=rna949|Name=rna949|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at CM002456.1:806675..810572- (Nannochloropsis gaditana)
CTTGCAAAAGTAATGGACCAATTTGAGAAGCAGTTTGAGGACACTGATGT
TCGGACCGGTTATTTAGAAGGCGCTATCGCCAGCACTACTGCCAGTGCAA
CACCTCAGGAAATGGTTGATAGCCTTATTCAAGAGACTGCAGATGCCCAT
AACCTGGAACTGGGTACTATGTTAGATAACGCTGGCATGGTGAGTGATAA
TCTACCTGCCGTTGAGGCTCAAGCAACAAATAATCTGGAGCAGCGGTTTG
AAGCATTGCGAAAATAAAACGCCATTCGAGAAAAAACACAAGCGCTAAAC
TATCTTCGATTATCGTCGAGAATAGATGCAGTGGCGGCGCGCTTGGAGAG
CGCGATACGAATGAAACAGGTTACGGGCGCTATGGCTGGTATAGTTGCGG
GCATGGATACGGCGCTTAAGGACATGGACGTTGAGAAGACCATCTGGTTA
ACTTGCGTCTCACCAGCAAGCAAATGGTGCGTGGATCCAAAAAATGCGAA
TCTAGTGAGAAAGATGCCAGAAACAAGTTGAAGAAGGCGATACAGAGCCG
TAATTTGGAAGGGGCACGCATTTACGCCCAGATGGGCAATAAGCCATCAC
TCGAAGCTTGCAAAAGTAATGGACCAATTTGAGAAGCAGTTTGAGGACAC
TGATGTTCGGACCGGTTATTTAGAAGGCGCTATCGCCAGCACTACTGCCA
GTGCAACACCTCAGGAAATGGTTGATAGCCTTATTCAAGAGACTGCAGAT
GCCCATAACCTGGAACTGGGTACTATGTTAGATAACGCTGGCATGGTGAG
TGATAATCTACCTGCCGTTGAGGCTCAAGCAACAAATAATCTGGAGCAGC
GGTTTGAAGCATTGCGAAAATAAAACGCCATTCGAGAAAAAACACAAGCG
CTAAACTATCTTCGATTATCGTCGAGAATAGATGCAGTGGCGGCGCGCTT
GGAGAGCGCGATACGAATGAAACAGGTTACGGGCGCTATGGCTGGTATAG
TTGCGGGCATGGATACGGCGCTTAAGGACATGGACGTTGAGAAGACCATC
TGGTTAACTTGCGTCTCACCAGCAAGCAAATGGTGCGTGGATCCAAAAAA
TGCGAATCTAGTGAGAAAGATGCCAGAAACAAGTTGAAGAAGGCGATACA
GAGCCGTAATTTGGAAGGGGCACGCATTTACGCCCAGATGGGCAATAAGC
CATCACTCGAAGCTTGCAAAAGTAATGGACCAATTTGAGAAGCAGTTTGA
GGACACTGATGTTCGGACCGGTTATTTAGAAGGCGCTATCGCCAGCACTA
CTGCCAGTGCAACACCTCAGGAAATGGTTGATAGCCTTATTCAAGAGACT
GCAGATGCCCATAACCTGGAACTGGGTACTATGTTAGATAACGCTGGCAT
GGTGAGTGATAATCTACCTGCCGTTGAGGCTCAAGCAACAAATAATCTGG
AGCAGCGGTTTGAAGCATTGCGAAAATAAAACGCCATTCGAGAAAAAACA
CAAGCGCTAAACTATCTTCGATTATCGTCGAGAATAGATGCAGTGGCGGC
GCGCTTGGAGAGCGCGATACGAATGAAACAGGTTACGGGCGCTATGGCTG
GTATAGTTGCGGGCATGGATACGGCGCTTAAGGACATGGACGTTGAGAAG
ACCATCTGGTTAACTTGCGTCTCACCAGCAAGCAAATGGTGCGTGGATCC
AAAAAATGCGAATCTAGTGAGAAAGATGCCAGAAACAAGTTGAAGAAGGC
GATACAGAGCCGTAATTTGGAAGGGGCACGCATTTACGCCCAGATGGGCA
ATAAGCCATCACTCGAAGCTTGCAAAAGTAATGGACCAATTTGAGAAGCA
GTTTGAGGACACTGATGTTCGGACCGGTTATTTAGAAGGCGCTATCGCCA
GCACTACTGCCAGTGCAACACCTCAGGAAATGGTTGATAGCCTTATTCAA
GAGACTGCAGATGCCCATAACCTGGAACTGGGTACTATGTTAGATAACGC
TGGCATGGTGAGTGATAATCTACCTGCCGTTGAGGCTCAAGCAACAAATA
ATCTGGAGCAGCGGTTTGAAGCATTGCGAAAATAAAACGCCATTCGAGAA
AAAACACAAGCGCTAAACTATCTTCGATTATCGTCGAGAATAGATGCAGT
GGCGGCGCGCTTGGAGAGCGCGATACGAATGAAACAGGTTACGGGCGCTA
TGGCTGGTATAGTTGCGGGCATGGATACGGCGCTTAAGGACATGGACGTT
GAGAAGACCATCTGGTTAACTTGCGTCTCACCAGCAAGCAAATGGTGCGT
GGATCCAAAAAATGCGAATCTAGTGAGAAAGATGCCAGAAACAAGTTGAA
GAAGGCGATACAGAGCCGTAATTTGGAAGGGGCACGCATTTACGCCCAGA
TGGGCAATAAGCCATCACTCGAAG back to top
|