EWM29733.1, cds949 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|585112313|gb|EWM29733.1| (snf7 family protein [Nannochloropsis gaditana]) HSP 1 Score: 410.609 bits (1054), Expect = 5.200e-145 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK 201
MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK
Sbjct: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK 201
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|298710020|emb|CBJ31738.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 234.958 bits (598), Expect = 1.737e-75 Identity = 125/208 (60.10%), Postives = 154/208 (74.04%), Query Frame = 0
Query: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQAT-------NNLEQRFEALRK 201
MGNK SLE+ L+NLRLTSKQ RG+ KC +E A+ KL++AI++ N+EGARIY QNAIREK Q+LN LRLSSRIDAVA+RLE+AIRMKQV +M G+V GM++ALK MDVE+++K MD FE+QFED DVR GY+E A+ +TA +TPQE VD LIQ AD LELG LD+AG VS+ +PA A A + L R ALRK
Sbjct: 1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEGVVKGMESALKAMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 208
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|1072230392|gb|OEU15125.1| (charged multivesicular body protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 228.024 bits (580), Expect = 8.355e-73 Identity = 108/185 (58.38%), Postives = 143/185 (77.30%), Query Frame = 0
Query: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVE 185
MGN+ SLED +VNLR+ SKQM R +KKCE +EK + +KLKKAIQ N EGARIY Q+AIREK QALN+LR++SRIDA ++R+E+A+RM QVT M G+V GMD L M+++K++ +MD+FE+QFED DV+T Y+EG + +TTA++TP E VDSLI + ADA+NLELG AG V P+V+
Sbjct: 1 MGNRVSLEDEMVNLRIVSKQMQRSAKKCEKNEKASMDKLKKAIQKGNHEGARIYGQDAIREKNQALNHLRMASRIDACSSRIETAVRMGQVTDGMQGVVRGMDKGLASMNIDKISTLMDKFEQQFEDLDVKTQYMEGTMNATTATSTPAEQVDSLIGQVADANNLELGEAFSEAGPVGKKAPSVK 185
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|676386557|ref|XP_009036557.1| (hypothetical protein AURANDRAFT_25840 [Aureococcus anophagefferens] >gi|323452679|gb|EGB08552.1| hypothetical protein AURANDRAFT_25840 [Aureococcus anophagefferens]) HSP 1 Score: 227.639 bits (579), Expect = 1.006e-72 Identity = 116/202 (57.43%), Postives = 152/202 (75.25%), Query Frame = 0
Query: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATN-NLEQRFEALRK 201
MGN+ SL++ L+NL++TSKQMV SKKCE EK + +KKAI+ N EGARIYAQNAIREKTQ LNYL++ SRIDAVAARLE+AIR K+++ M +V GM+ ALK MDVEK++K MD FEKQFED DVR GY+E A+ ++TASATP++ VD L+++ AD H L++ LD+AG V PAV A + +L R +AL++
Sbjct: 1 MGNRISLQEELINLKMTSKQMVSASKKCEKQEKKYKKDVKKAIEKGNAEGARIYAQNAIREKTQGLNYLKMGSRIDAVAARLETAIRTKEMSKNMGNVVKGMNNALKSMDVEKISKTMDDFEKQFEDMDVRAGYMESAMNNSTASATPEDQVDGLLKQVADEHQLDVSFALDDAGAVGTATPAVAAPPQDTSLAGRLDALKR 202
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|673051493|ref|XP_008879707.1| (hypothetical protein H310_13837 [Aphanomyces invadans] >gi|574464736|gb|ETV91781.1| hypothetical protein H310_13837 [Aphanomyces invadans]) HSP 1 Score: 222.246 bits (565), Expect = 1.420e-70 Identity = 111/200 (55.50%), Postives = 146/200 (73.00%), Query Frame = 0
Query: 4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDN--LPAVEAQATNNLEQRFEALRK 201
+P+LED L +R T+K +VR +KKCE ++ + KLK+AI+ N+EGA+IYAQNAIREK QALNYL+LSSRIDAVAAR+++AI M + MAG+V GM+ + M+VEK++K MDQFE+QFED DVR Y+EGA+ STTA ATP + VD LIQ AD + L + LD+AG V + +PA QAT++L R ALRK
Sbjct: 7 RPTLEDELFKMRFTAKSLVRNAKKCEKNQIAQKLKLKQAIEKGNMEGAKIYAQNAIREKNQALNYLQLSSRIDAVAARVQTAISMGNLKSNMAGVVKGMNVVMDSMNVEKISKTMDQFERQFEDLDVRAAYMEGAMNSTTAGATPADQVDDLIQMVADENGLVIAGQLDSAGAVGSHVAVPAPAPQATDDLTARLAALRK 206
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|224006876|ref|XP_002292398.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972040|gb|EED90373.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 217.624 bits (553), Expect = 9.220e-69 Identity = 115/205 (56.10%), Postives = 147/205 (71.71%), Query Frame = 0
Query: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSD-NLPAVEAQAT----NNLEQRFEALR 200
MGN SLE+ L+NLR+TSKQM R SKKCE +EK A +KLKKAI+ N EGARIYAQ+AIREK QALN LRL+SRIDAVA+RLE+A+RM VT +M G+V GMD L MDV+K++ MD+FE+QFED DV+ Y++ A+ STTASATP + VD L++ AD +NL+LG + G V P E + + ++LE R LR
Sbjct: 1 MGNSISLEEELINLRMTSKQMQRSSKKCEKNEKAAVDKLKKAIKQGNSEGARIYAQDAIREKNQALNCLRLASRIDAVASRLETAVRMNTVTKSMKGVVKGMDKGLASMDVDKISATMDKFEQQFEDLDVKAAYMDQAMNSTTASATPVDQVDELVKMVADENNLQLGEAFGDLGPVGKIKEPEPEKKESVAVEDDLEARLANLR 205
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|219117971|ref|XP_002179770.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|219130893|ref|XP_002185588.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402996|gb|EEC42953.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408823|gb|EEC48756.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 215.698 bits (548), Expect = 1.479e-68 Identity = 103/168 (61.31%), Postives = 132/168 (78.57%), Query Frame = 0
Query: 1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELG 168
MGNK SLE+ LVNLR+TSKQM R SKKCE +EK A KLKKAIQ N EGARIY Q+AIREK Q+LN+LR++SR+DA +R+E+A+RM V+ +M G+V GM ++ MD+EKL+ MD+FE+QFED DV+T Y+EGA+ +TTA++TP E VD LI AD +NLELG
Sbjct: 1 MGNKISLEEELVNLRITSKQMHRSSKKCEKNEKAALEKLKKAIQQGNSEGARIYGQDAIREKNQSLNHLRMASRLDACCSRIETAVRMNAVSDSMKGVVKGMGRSMASMDIEKLSSTMDKFEQQFEDLDVKTQYMEGAMNATTATSTPAEQVDELIGRVADENNLELG 168
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|669170871|ref|XP_008620784.1| (hypothetical protein SDRG_16357 [Saprolegnia diclina VS20] >gi|530727517|gb|EQC25759.1| hypothetical protein SDRG_16357 [Saprolegnia diclina VS20]) HSP 1 Score: 215.698 bits (548), Expect = 5.769e-68 Identity = 109/202 (53.96%), Postives = 146/202 (72.28%), Query Frame = 0
Query: 4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMV---SDNLPAVEAQAT-NNLEQRFEALRK 201
+P+LED L ++ T+K ++R +KKC+ ++ + KLKKAI+ N+EGA+IYAQNAIREK QAL+YL+LSSRIDAVAAR+++AI M ++ M+G+V GMD + M+VEK++K MDQFEKQFED DVR+ Y+EGA+ STTA ATP + VD LIQ AD + L + LDNAG V + PA +T N+L R ALRK
Sbjct: 7 RPTLEDELFKMKFTAKSLLRNAKKCDKNQTAQKTKLKKAIEQGNMEGAKIYAQNAIREKNQALSYLQLSSRIDAVAARVQTAISMGKLKQNMSGVVKGMDVVMDSMNVEKISKTMDQFEKQFEDLDVRSAYMEGAMNSTTAGATPTDQVDDLIQMVADENGLVIAGQLDNAGAVGLETHVQPAAAPTSTANDLSARLAALRK 208
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|813213225|ref|XP_012210413.1| (hypothetical protein SPRG_15844 [Saprolegnia parasitica CBS 223.65] >gi|641524265|gb|KDO18892.1| hypothetical protein SPRG_15844 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 214.542 bits (545), Expect = 2.047e-67 Identity = 109/202 (53.96%), Postives = 145/202 (71.78%), Query Frame = 0
Query: 4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMV---SDNLPAVEAQAT-NNLEQRFEALRK 201
+P+LED L ++ T+K ++R +KKC+ ++ + KLKKAI+ N+EGA+IYAQNAIREK QAL+YL+LSSRIDAVAAR+++AI M ++ M+G+V GMD + M+VEK++K MDQFEKQFED DVR Y+EGA+ STTA ATP + VD LIQ AD + L + LDNAG V + PA +T N+L R ALRK
Sbjct: 7 RPTLEDELFKMKFTAKSLLRNAKKCDKNQAAQKTKLKKAIEMGNMEGAKIYAQNAIREKNQALSYLQLSSRIDAVAARVQTAISMGKLKQNMSGVVKGMDVVMDSMNVEKISKTMDQFEKQFEDLDVRAAYMEGAMNSTTAGATPTDQVDDLIQMVADENGLVIAGQLDNAGAVGVETHVQPAAAPTSTANDLSARLAALRK 208
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|695431895|ref|XP_009530801.1| (hypothetical protein PHYSODRAFT_513904 [Phytophthora sojae] >gi|348673553|gb|EGZ13372.1| hypothetical protein PHYSODRAFT_513904 [Phytophthora sojae]) HSP 1 Score: 214.157 bits (544), Expect = 2.841e-67 Identity = 104/202 (51.49%), Postives = 148/202 (73.27%), Query Frame = 0
Query: 4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEA----QATNNLEQRFEALRK 201
K LED L N++ T+K ++R +KKCE ++ + KLKKAI+ N+EGA+IYAQN IREK QAL+YL+L+SR+DAVAAR+++AI M Q+ M+G+V GMDT ++ M+VEK+++ MDQFEK FED DVR+ Y+EGA++S T+ +TP + VD LIQ AD + L++ LD+AG+V LP EA ++ ++L R ALRK
Sbjct: 8 KNKLEDELFNMKFTAKTLLRNAKKCEKNQVAQKAKLKKAIEQGNMEGAKIYAQNVIREKNQALSYLQLASRMDAVAARVQTAISMGQLKANMSGVVKGMDTVMESMNVEKISQTMDQFEKHFEDMDVRSAYMEGAMSSGTSLSTPADQVDDLIQMVADENGLKIAGQLDSAGLVGTELPTTEAAREKKSQDDLTMRLAALRK 209 The following BLAST results are available for this feature:
BLAST of EWM29733.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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