EWM29733.1, cds949 (CDS) Nannochloropsis gaditana

Overview
NameEWM29733.1
Unique Namecds949
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:809942..809966 -
Alignment locationCM002456.1:809717..809859 -
Alignment locationCM002456.1:809464..809634 -
Alignment locationCM002456.1:809113..809379 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29733.1
Productsnf7 family protein
Orig transcript idgnl|cribi|Naga_100022g65.832.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:809942..809966 -
CM002456.1supercontigCM002456.1:809717..809859 -
CM002456.1supercontigCM002456.1:809464..809634 -
CM002456.1supercontigCM002456.1:809113..809379 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|585112313|gb|EWM29733.1| (snf7 family protein [Nannochloropsis gaditana])

HSP 1 Score: 410.609 bits (1054), Expect = 5.200e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK 201
            MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK
Sbjct:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATNNLEQRFEALRK 201          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|298710020|emb|CBJ31738.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 234.958 bits (598), Expect = 1.737e-75
Identity = 125/208 (60.10%), Postives = 154/208 (74.04%), Query Frame = 0
Query:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQAT-------NNLEQRFEALRK 201
            MGNK SLE+ L+NLRLTSKQ  RG+ KC  +E  A+ KL++AI++ N+EGARIY QNAIREK Q+LN LRLSSRIDAVA+RLE+AIRMKQV  +M G+V GM++ALK MDVE+++K MD FE+QFED DVR GY+E A+  +TA +TPQE VD LIQ  AD   LELG  LD+AG VS+ +PA  A A        + L  R  ALRK
Sbjct:    1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEGVVKGMESALKAMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 208          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|1072230392|gb|OEU15125.1| (charged multivesicular body protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 228.024 bits (580), Expect = 8.355e-73
Identity = 108/185 (58.38%), Postives = 143/185 (77.30%), Query Frame = 0
Query:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVE 185
            MGN+ SLED +VNLR+ SKQM R +KKCE +EK + +KLKKAIQ  N EGARIY Q+AIREK QALN+LR++SRIDA ++R+E+A+RM QVT  M G+V GMD  L  M+++K++ +MD+FE+QFED DV+T Y+EG + +TTA++TP E VDSLI + ADA+NLELG     AG V    P+V+
Sbjct:    1 MGNRVSLEDEMVNLRIVSKQMQRSAKKCEKNEKASMDKLKKAIQKGNHEGARIYGQDAIREKNQALNHLRMASRIDACSSRIETAVRMGQVTDGMQGVVRGMDKGLASMNIDKISTLMDKFEQQFEDLDVKTQYMEGTMNATTATSTPAEQVDSLIGQVADANNLELGEAFSEAGPVGKKAPSVK 185          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|676386557|ref|XP_009036557.1| (hypothetical protein AURANDRAFT_25840 [Aureococcus anophagefferens] >gi|323452679|gb|EGB08552.1| hypothetical protein AURANDRAFT_25840 [Aureococcus anophagefferens])

HSP 1 Score: 227.639 bits (579), Expect = 1.006e-72
Identity = 116/202 (57.43%), Postives = 152/202 (75.25%), Query Frame = 0
Query:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEAQATN-NLEQRFEALRK 201
            MGN+ SL++ L+NL++TSKQMV  SKKCE  EK  +  +KKAI+  N EGARIYAQNAIREKTQ LNYL++ SRIDAVAARLE+AIR K+++  M  +V GM+ ALK MDVEK++K MD FEKQFED DVR GY+E A+ ++TASATP++ VD L+++ AD H L++   LD+AG V    PAV A   + +L  R +AL++
Sbjct:    1 MGNRISLQEELINLKMTSKQMVSASKKCEKQEKKYKKDVKKAIEKGNAEGARIYAQNAIREKTQGLNYLKMGSRIDAVAARLETAIRTKEMSKNMGNVVKGMNNALKSMDVEKISKTMDDFEKQFEDMDVRAGYMESAMNNSTASATPEDQVDGLLKQVADEHQLDVSFALDDAGAVGTATPAVAAPPQDTSLAGRLDALKR 202          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|673051493|ref|XP_008879707.1| (hypothetical protein H310_13837 [Aphanomyces invadans] >gi|574464736|gb|ETV91781.1| hypothetical protein H310_13837 [Aphanomyces invadans])

HSP 1 Score: 222.246 bits (565), Expect = 1.420e-70
Identity = 111/200 (55.50%), Postives = 146/200 (73.00%), Query Frame = 0
Query:    4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDN--LPAVEAQATNNLEQRFEALRK 201
            +P+LED L  +R T+K +VR +KKCE ++   + KLK+AI+  N+EGA+IYAQNAIREK QALNYL+LSSRIDAVAAR+++AI M  +   MAG+V GM+  +  M+VEK++K MDQFE+QFED DVR  Y+EGA+ STTA ATP + VD LIQ  AD + L +   LD+AG V  +  +PA   QAT++L  R  ALRK
Sbjct:    7 RPTLEDELFKMRFTAKSLVRNAKKCEKNQIAQKLKLKQAIEKGNMEGAKIYAQNAIREKNQALNYLQLSSRIDAVAARVQTAISMGNLKSNMAGVVKGMNVVMDSMNVEKISKTMDQFERQFEDLDVRAAYMEGAMNSTTAGATPADQVDDLIQMVADENGLVIAGQLDSAGAVGSHVAVPAPAPQATDDLTARLAALRK 206          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|224006876|ref|XP_002292398.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972040|gb|EED90373.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 217.624 bits (553), Expect = 9.220e-69
Identity = 115/205 (56.10%), Postives = 147/205 (71.71%), Query Frame = 0
Query:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSD-NLPAVEAQAT----NNLEQRFEALR 200
            MGN  SLE+ L+NLR+TSKQM R SKKCE +EK A +KLKKAI+  N EGARIYAQ+AIREK QALN LRL+SRIDAVA+RLE+A+RM  VT +M G+V GMD  L  MDV+K++  MD+FE+QFED DV+  Y++ A+ STTASATP + VD L++  AD +NL+LG    + G V     P  E + +    ++LE R   LR
Sbjct:    1 MGNSISLEEELINLRMTSKQMQRSSKKCEKNEKAAVDKLKKAIKQGNSEGARIYAQDAIREKNQALNCLRLASRIDAVASRLETAVRMNTVTKSMKGVVKGMDKGLASMDVDKISATMDKFEQQFEDLDVKAAYMDQAMNSTTASATPVDQVDELVKMVADENNLQLGEAFGDLGPVGKIKEPEPEKKESVAVEDDLEARLANLR 205          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|219117971|ref|XP_002179770.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|219130893|ref|XP_002185588.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402996|gb|EEC42953.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408823|gb|EEC48756.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 215.698 bits (548), Expect = 1.479e-68
Identity = 103/168 (61.31%), Postives = 132/168 (78.57%), Query Frame = 0
Query:    1 MGNKPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELG 168
            MGNK SLE+ LVNLR+TSKQM R SKKCE +EK A  KLKKAIQ  N EGARIY Q+AIREK Q+LN+LR++SR+DA  +R+E+A+RM  V+ +M G+V GM  ++  MD+EKL+  MD+FE+QFED DV+T Y+EGA+ +TTA++TP E VD LI   AD +NLELG
Sbjct:    1 MGNKISLEEELVNLRITSKQMHRSSKKCEKNEKAALEKLKKAIQQGNSEGARIYGQDAIREKNQSLNHLRMASRLDACCSRIETAVRMNAVSDSMKGVVKGMGRSMASMDIEKLSSTMDKFEQQFEDLDVKTQYMEGAMNATTATSTPAEQVDELIGRVADENNLELG 168          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|669170871|ref|XP_008620784.1| (hypothetical protein SDRG_16357 [Saprolegnia diclina VS20] >gi|530727517|gb|EQC25759.1| hypothetical protein SDRG_16357 [Saprolegnia diclina VS20])

HSP 1 Score: 215.698 bits (548), Expect = 5.769e-68
Identity = 109/202 (53.96%), Postives = 146/202 (72.28%), Query Frame = 0
Query:    4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMV---SDNLPAVEAQAT-NNLEQRFEALRK 201
            +P+LED L  ++ T+K ++R +KKC+ ++   + KLKKAI+  N+EGA+IYAQNAIREK QAL+YL+LSSRIDAVAAR+++AI M ++   M+G+V GMD  +  M+VEK++K MDQFEKQFED DVR+ Y+EGA+ STTA ATP + VD LIQ  AD + L +   LDNAG V   +   PA    +T N+L  R  ALRK
Sbjct:    7 RPTLEDELFKMKFTAKSLLRNAKKCDKNQTAQKTKLKKAIEQGNMEGAKIYAQNAIREKNQALSYLQLSSRIDAVAARVQTAISMGKLKQNMSGVVKGMDVVMDSMNVEKISKTMDQFEKQFEDLDVRSAYMEGAMNSTTAGATPTDQVDDLIQMVADENGLVIAGQLDNAGAVGLETHVQPAAAPTSTANDLSARLAALRK 208          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|813213225|ref|XP_012210413.1| (hypothetical protein SPRG_15844 [Saprolegnia parasitica CBS 223.65] >gi|641524265|gb|KDO18892.1| hypothetical protein SPRG_15844 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 214.542 bits (545), Expect = 2.047e-67
Identity = 109/202 (53.96%), Postives = 145/202 (71.78%), Query Frame = 0
Query:    4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMV---SDNLPAVEAQAT-NNLEQRFEALRK 201
            +P+LED L  ++ T+K ++R +KKC+ ++   + KLKKAI+  N+EGA+IYAQNAIREK QAL+YL+LSSRIDAVAAR+++AI M ++   M+G+V GMD  +  M+VEK++K MDQFEKQFED DVR  Y+EGA+ STTA ATP + VD LIQ  AD + L +   LDNAG V   +   PA    +T N+L  R  ALRK
Sbjct:    7 RPTLEDELFKMKFTAKSLLRNAKKCDKNQAAQKTKLKKAIEMGNMEGAKIYAQNAIREKNQALSYLQLSSRIDAVAARVQTAISMGKLKQNMSGVVKGMDVVMDSMNVEKISKTMDQFEKQFEDLDVRAAYMEGAMNSTTAGATPTDQVDDLIQMVADENGLVIAGQLDNAGAVGVETHVQPAAAPTSTANDLSARLAALRK 208          
BLAST of EWM29733.1 vs. NCBI_GenBank
Match: gi|695431895|ref|XP_009530801.1| (hypothetical protein PHYSODRAFT_513904 [Phytophthora sojae] >gi|348673553|gb|EGZ13372.1| hypothetical protein PHYSODRAFT_513904 [Phytophthora sojae])

HSP 1 Score: 214.157 bits (544), Expect = 2.841e-67
Identity = 104/202 (51.49%), Postives = 148/202 (73.27%), Query Frame = 0
Query:    4 KPSLEDHLVNLRLTSKQMVRGSKKCESSEKDARNKLKKAIQSRNLEGARIYAQNAIREKTQALNYLRLSSRIDAVAARLESAIRMKQVTGAMAGIVAGMDTALKDMDVEKLAKVMDQFEKQFEDTDVRTGYLEGAIASTTASATPQEMVDSLIQETADAHNLELGTMLDNAGMVSDNLPAVEA----QATNNLEQRFEALRK 201
            K  LED L N++ T+K ++R +KKCE ++   + KLKKAI+  N+EGA+IYAQN IREK QAL+YL+L+SR+DAVAAR+++AI M Q+   M+G+V GMDT ++ M+VEK+++ MDQFEK FED DVR+ Y+EGA++S T+ +TP + VD LIQ  AD + L++   LD+AG+V   LP  EA    ++ ++L  R  ALRK
Sbjct:    8 KNKLEDELFNMKFTAKTLLRNAKKCEKNQVAQKAKLKKAIEQGNMEGAKIYAQNVIREKNQALSYLQLASRMDAVAARVQTAISMGQLKANMSGVVKGMDTVMESMNVEKISQTMDQFEKHFEDMDVRSAYMEGAMSSGTSLSTPADQVDDLIQMVADENGLKIAGQLDSAGLVGTELPTTEAAREKKSQDDLTMRLAALRK 209          
The following BLAST results are available for this feature:
BLAST of EWM29733.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112313|gb|EWM29733.1|5.200e-145100.00snf7 family protein [Nannochloropsis gaditana][more]
gi|298710020|emb|CBJ31738.1|1.737e-7560.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072230392|gb|OEU15125.1|8.355e-7358.38charged multivesicular body protein [Fragilariopsi... [more]
gi|676386557|ref|XP_009036557.1|1.006e-7257.43hypothetical protein AURANDRAFT_25840 [Aureococcus... [more]
gi|673051493|ref|XP_008879707.1|1.420e-7055.50hypothetical protein H310_13837 [Aphanomyces invad... [more]
gi|224006876|ref|XP_002292398.1|9.220e-6956.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219117971|ref|XP_002179770.1|1.479e-6861.31predicted protein, partial [Phaeodactylum tricornu... [more]
gi|669170871|ref|XP_008620784.1|5.769e-6853.96hypothetical protein SDRG_16357 [Saprolegnia dicli... [more]
gi|813213225|ref|XP_012210413.1|2.047e-6753.96hypothetical protein SPRG_15844 [Saprolegnia paras... [more]
gi|695431895|ref|XP_009530801.1|2.841e-6751.49hypothetical protein PHYSODRAFT_513904 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna949rna949Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications