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Properties
| Property Name | Value |
|---|
| Product | pseudouridine family |
| Orig transcript id | gnl|cribi|Naga_101418g2.2151.mrna |
| Orig protein id | gnl|cribi|Naga_101418g2.2151 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037253.1 | supercontig | KK037253.1:402015..403284 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9486 ID=rna9486|Name=rna9486|organism=Nannochloropsis gaditana|type=mRNA|length=1199bp
AGTACGGAGGAACTTCAACTTCCATGTTCGCCGTCTCCCACAGCGCTTTG
CATAGATTAAGCCCCACGGGCAGCGAGGTTTAAACCGGCGTAATCGGGGA
GATGTATGAGTAATTATGGAGCTCCTTGTTCATGATTACGTCTAATCACT
TTCCATCTTTTTCAAGGACATCCCGTAGGGAGCTATCCCCCTGGGAACGA
GCGGTTGAAATCATTGGCCAGAGTACTAGAGCCGCTTTATTCCCCTCTTG
GATACAGCATTTGGACACTCTGTCCATATGATCTACCTAGCCATTCTGTT
TCTTCTCCTTGATGTCGGTGCCGCCTGGAGATACCGAACGGACGTGCCCT
CCTTCTCGTCCCTCCCCTTCACGACGAGGCACATCGAAAGTATCCCTGTT
AGGAAAGCTGACATCTCCTTCCTCCCACCCTGGGCCCTGTTCTCCAGCGT
ACAAGGTGGAGGAATGCAAGCGAAGGGGGAAAAAGGCGGGAGAAATGACC
AAGAAACCCCGGCGGTGATGGACGTAGAGGAGGGAGAGGAGATTGCTGAA
TTCCACGTCACTGCCAAGGAGGGCATGCTCCCTCTGGATATCCTGCTTGT
TCGTCGATTCCCTGAGCTCTCTCGGCGAGCCTGCCGACGACTCTTGCAGG
AGGGAAGGGTCCACGTCAATGGGCGAGTCACGACCCGCTTGAGCAAACTC
GGGACCGGCAAGAATCTGCTCAGGGTGCTCCTCCCCAGAGGCGGGATGGC
TTCATCCATCGGCCTGGGCTTCCAACTCCTTCCCGAGAAAATGAATCTCA
CGTTCGTTCCCGCCCTTTTTCCCCTCCCTCCCTCGTTCCCGCCCTCCCTC
TTTCCCTCCCTCCCTCCTTCCTCTCCCTCCCTCCTTCCCCTTCCCCCCTC
CTTCCCTCCCCCCCTTCTTCCCCTACCTTCGTTCTCTCTTTTCCTCCCCT
CTTTCTATCTTCTCTCTTTCTTCTCCTCCCTCCTCCCTGTCCCTTTTTCC
CTCGCTGCACTCCCATTCCGCCTTTCGCCCTGTCTTTAGGAACCTCTCCC
TCCCTCCCTTTCTCCCTCCCTCCCATCCTCTCTCCTTGCTTACCTTCCTT
CCTCCAGGGTGCTTTATGAGGACGAGCATTTCATCGCCCTCGGTAAAGGC
CCGGACGTTGTGGTACAGCCCTGCGAGAGTGCGCCCACCGGTAACCTCC back to topprotein sequence of rna9486 >rna9486-protein ID=rna9486-protein|Name=rna9486|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRK
NTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSK
GPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGA
TGGEAAEARDLEEEEWDEQD back to topmRNA from alignment at KK037253.1:402015..403284+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9486 ID=rna9486|Name=rna9486|organism=Nannochloropsis gaditana|type=mRNA|length=1270bp|location=Sequence derived from alignment at KK037253.1:402015..403284+ (Nannochloropsis gaditana)
gtatcctccccctctctcccgcgcAGGATCTCTCTGGTCCGCGTAGAGAT
CTTGACGGGACGCACCCACCAGATCCGCGTGCACCTCACTCAtctgggtg
gggagggagggagggagggagggagggaggggagggaggaaaggagggag
ggggggtaaggagggagggagggagggagagagacgaaggATAGGGAACG
AGGCCCGTGAGCCGATGGAAAGGCGCGTCCACTGCTTTTTCGCTACGGGT
GGGTGATTGTGCGTCTCCCTGAAAGGaacccctctctttctccctccctc
cccctctccctctctccctttctccctccccgtcttcagGCCATCCAGTT
CTTGGCGATGACGTCTACTGCTCTGCGGACTTCACGCGCAAGAACACACA
CCTCCGACGACTCggtaaggggggggggggggggaggctgcgCACTGCGT
GGCACGATGGGTgtcaggggagggagggagggagggagggagggagggag
ggagagcggagCGAGGATACAGCGCCTTCtgccttccgtcctcccgaCTT
TTCTCGGCCCCACAGCgaccttccccgcctcccctgcgctttctcccctc
cctccctcctttcccgcagGCCTGaagcgcgtcctcctccacgcttactc
cctcgccttcgtccACCCGGCCCTGCAGAcgcccctcaccctcctcgccc
ccctcccgcgggaCATGCTCTCCGTCGCCCAGTTCGTCCTCAGCAAAGGT
CCTGGGCCTACGGGCAAACACGGTAAGGCTCTTTTTCCGCCGGGAAGGGC
TTGTTTTCTTTCTGTTTGTTGAGAATCTTCCTCGCGGCGTGGGGCTGTAT
GAATGCTTCTTCTGCGAACGTCAATAGGAAGAGGAGTTCTTCCCCCTTGG
CGACTTGCATGGTGGGCACGCCGGGCTGAGGAGTGATGCCATATTTACGa
ctctgtcctccccttttctttcctctccttccagaGGACAGTCGGAAGCT
CCTTCGACTGCTTCGAGACGGTGAACCCCTGACGCCGGCTTTGGGTCATG
ACGTCGCGTCCCCGGTGCCGAGCACGGCAATAGCAAGCAATGCCCCTTCC
ATTGGGGCAactggaggggaggcggcagaggcgagggatctggaggagga
agagtgggACGAGCAAGACTAGAATGGAGTGGTTGCATGTGCGTGGAGAG
AAGGCGTTTCTTACATTTTGACTCCTGTAAAAAGATATTCGGCATAAGGA
ACACCTTCTCGCTAGATGGG back to topCoding sequence (CDS) from alignment at KK037253.1:402015..403284+ >rna9486 ID=rna9486|Name=rna9486|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at KK037253.1:402015..403284+ (Nannochloropsis gaditana)
gtatcctccccctctctcccgcgcAGGATCTCTCTGGTCCGCGTAGAGAT
CTTGACGGGACGCACCCACCAGATCCGCGTGCACCTCACTCAtctggGCC
ATCCAGTTCTTGGCGATGACGTCTACTGCTCTGCGGACTTCACGCGCAAG
AACACACACCTCCGACGACTCgGCCTGaagcgcgtcctcctccacgctta
ctccctcgccttcgtccACCCGGCCCTGCAGAcgcccctcaccctcctcg
cccccctcccgcgggaCATGCTCTCCGTCGCCCAGTTCGTCCTCAGCAAA
GGTCCTGGGCCTACGGGCAAACACGaGGACAGTCGGAAGCTCCTTCGACT
GCTTCGAGACGGTGAACCCCTGACGCCGGCTTTGGGTCATGACGTCGCGT
CCCCGGTGCCGAGCACGGCAATAGCAAGCAATGCCCCTTCCATTGGGGCA
actggaggggaggcggcagaggcgagggatctggaggaggaagagtgggA
CGAGCAAGACTAGgtatcctccccctctctcccgcgcAGGATCTCTCTGG
TCCGCGTAGAGATCTTGACGGGACGCACCCACCAGATCCGCGTGCACCTC
ACTCAtctggGCCATCCAGTTCTTGGCGATGACGTCTACTGCTCTGCGGA
CTTCACGCGCAAGAACACACACCTCCGACGACTCgGCCTGaagcgcgtcc
tcctccacgcttactccctcgccttcgtccACCCGGCCCTGCAGAcgccc
ctcaccctcctcgcccccctcccgcgggaCATGCTCTCCGTCGCCCAGTT
CGTCCTCAGCAAAGGTCCTGGGCCTACGGGCAAACACGaGGACAGTCGGA
AGCTCCTTCGACTGCTTCGAGACGGTGAACCCCTGACGCCGGCTTTGGGT
CATGACGTCGCGTCCCCGGTGCCGAGCACGGCAATAGCAAGCAATGCCCC
TTCCATTGGGGCAactggaggggaggcggcagaggcgagggatctggagg
aggaagagtgggACGAGCAAGACTAGgtatcctccccctctctcccgcgc
AGGATCTCTCTGGTCCGCGTAGAGATCTTGACGGGACGCACCCACCAGAT
CCGCGTGCACCTCACTCAtctggGCCATCCAGTTCTTGGCGATGACGTCT
ACTGCTCTGCGGACTTCACGCGCAAGAACACACACCTCCGACGACTCgGC
CTGaagcgcgtcctcctccacgcttactccctcgccttcgtccACCCGGC
CCTGCAGAcgcccctcaccctcctcgcccccctcccgcgggaCATGCTCT
CCGTCGCCCAGTTCGTCCTCAGCAAAGGTCCTGGGCCTACGGGCAAACAC
GaGGACAGTCGGAAGCTCCTTCGACTGCTTCGAGACGGTGAACCCCTGAC
GCCGGCTTTGGGTCATGACGTCGCGTCCCCGGTGCCGAGCACGGCAATAG
CAAGCAATGCCCCTTCCATTGGGGCAactggaggggaggcggcagaggcg
agggatctggaggaggaagagtgggACGAGCAAGACTAGgtatcctcccc
ctctctcccgcgcAGGATCTCTCTGGTCCGCGTAGAGATCTTGACGGGAC
GCACCCACCAGATCCGCGTGCACCTCACTCAtctggGCCATCCAGTTCTT
GGCGATGACGTCTACTGCTCTGCGGACTTCACGCGCAAGAACACACACCT
CCGACGACTCgGCCTGaagcgcgtcctcctccacgcttactccctcgcct
tcgtccACCCGGCCCTGCAGAcgcccctcaccctcctcgcccccctcccg
cgggaCATGCTCTCCGTCGCCCAGTTCGTCCTCAGCAAAGGTCCTGGGCC
TACGGGCAAACACGaGGACAGTCGGAAGCTCCTTCGACTGCTTCGAGACG
GTGAACCCCTGACGCCGGCTTTGGGTCATGACGTCGCGTCCCCGGTGCCG
AGCACGGCAATAGCAAGCAATGCCCCTTCCATTGGGGCAactggagggga
ggcggcagaggcgagggatctggaggaggaagagtgggACGAGCAAGACT
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