EWM21217.1, cds9455 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|585101325|gb|EWM21217.1| (pseudouridine family, partial [Nannochloropsis gaditana]) HSP 1 Score: 340.117 bits (871), Expect = 3.898e-118 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query: 1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGATGGEAAEARDLEEEEWDEQD 170
VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGATGGEAAEARDLEEEEWDEQD
Sbjct: 1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGATGGEAAEARDLEEEEWDEQD 170
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1085104027|gb|OGT01214.1| (RNA pseudouridine synthase [Gallionellales bacterium RBG_16_57_15]) HSP 1 Score: 91.6633 bits (226), Expect = 4.167e-19 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 0
Query: 5 SLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDM 90
SLP SL+ ++ TGRTHQIRVHL HLG P+ GDD Y DF R N L + GLKR+ LHA+S+AF HP PL L APLP+D+
Sbjct: 224 SLPA-FSLLEAQLKTGRTHQIRVHLAHLGFPIAGDDKY--GDFAR-NKALMKQGLKRMFLHAHSIAFAHPLTGEPLQLTAPLPKDL 305
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1082642234|gb|OFZ68904.1| (RNA pseudouridine synthase [Betaproteobacteria bacterium RBG_16_56_24]) HSP 1 Score: 90.1225 bits (222), Expect = 1.585e-18 Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 0
Query: 10 ISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDM 90
SL+ ++ TGRTHQIRVHL+HLG P+ GDD Y DF R ++R GLKR+ LHAYS+AF HP + L+APLP+++
Sbjct: 225 FSLLEAQLKTGRTHQIRVHLSHLGFPIAGDDKY--GDFARNKVLMKR-GLKRMFLHAYSIAFAHPLTGEAMRLVAPLPKEL 302
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|500481279|ref|WP_011944206.1| (pseudouridine synthase [Thermotoga petrophila] >gi|147736462|gb|ABQ47802.1| ribosomal large subunit pseudouridine synthase C [Thermotoga petrophila RKU-1]) HSP 1 Score: 89.7373 bits (221), Expect = 1.792e-18 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFV 97
VS SL R +SL+RV+I TGR HQIR HL+ +G PV+GDD Y F R+ +R GLKR+ LH+Y + F+ P + APLP D+LSV F+
Sbjct: 198 VSVKSL-RDVSLLRVKIHTGRKHQIRRHLSQIGFPVVGDDTYGDRHFNRE--FRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDDLLSVLNFL 291
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|740211920|ref|WP_038053783.1| (pseudouridine synthase [Thermotoga sp. Mc24] >gi|723259439|gb|KHC90901.1| RluA family pseudouridine synthase [Thermotoga sp. Mc24]) HSP 1 Score: 89.7373 bits (221), Expect = 1.830e-18 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFV 97
VS SL R +SL+RV+I TGR HQIR HL+ +G PV+GDD Y F R+ +R GLKR+ LH+Y + F+ P + APLP D+LSV F+
Sbjct: 198 VSVKSL-RDVSLLRVKIHTGRKHQIRRHLSQIGFPVVGDDTYGDRHFNRE--FRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDDLLSVLNFL 291
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1085071755|gb|OGS71305.1| (RNA pseudouridine synthase [Gallionellales bacterium GWA2_60_142]) HSP 1 Score: 88.9669 bits (219), Expect = 4.567e-18 Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 0
Query: 10 ISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDM 90
SL+ E+ TGRTHQIRVHL+HLG P+ GDD Y DF R N L + GLKR+ LHA+S++F HP PL + APLP+++
Sbjct: 230 FSLLEAELKTGRTHQIRVHLSHLGFPIAGDDKY--GDFAR-NRQLIKQGLKRMFLHAHSISFNHPLTGEPLQITAPLPQEL 307
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1055951784|ref|WP_067493671.1| (RluA family pseudouridine synthase [Ferrovum sp. PN-J185] >gi|1003314677|gb|KXW56802.1| ribosomal large subunit pseudouridine synthase C [Ferrovum sp. PN-J185]) HSP 1 Score: 88.5817 bits (218), Expect = 5.407e-18 Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0
Query: 11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQ 95
SL++V ++TGRTHQIRVHL+H+GHP+ GDD Y DF+ +R LKR+ LHA L F+HP +TL APLP+++ Q
Sbjct: 228 SLLKVNLITGRTHQIRVHLSHIGHPLAGDDKY--GDFSWNREMHQRFSLKRLFLHAALLEFIHPITNEKVTLDAPLPKELTQFLQ 310
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|917255519|ref|WP_051862231.1| (MULTISPECIES: RluA family pseudouridine synthase [Ferrovum]) HSP 1 Score: 88.1965 bits (217), Expect = 9.140e-18 Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 0
Query: 11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPG 103
+L+ +LTGRTHQIRVHL HLG P+ GDD Y + D+ N L RLG KR+ LHA L+FVHP Q PL APLP + + + G G
Sbjct: 228 TLLEARLLTGRTHQIRVHLAHLGFPIAGDDKYGNYDW---NHQLTRLGFKRMFLHAARLSFVHPLDQRPLVFEAPLPLPLAQILTRLAKSGLG 317
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1011805543|ref|WP_062625926.1| (RluA family pseudouridine synthase [Ferriphaselus amnicola] >gi|800136885|dbj|GAO32663.1| ribosomal large subunit pseudouridine synthase C [Ferriphaselus amnicola]) HSP 1 Score: 88.1965 bits (217), Expect = 9.344e-18 Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0
Query: 11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQ 95
+L+ E+ TGRTHQIRVHL+HLG+P+ GDD Y DF T L + GLKR+ LHA+S++F HP PLT++APL ++++S +
Sbjct: 225 TLLEAELKTGRTHQIRVHLSHLGYPIAGDDKY--GDFALNKT-LMKQGLKRMFLHAHSISFNHPLSGEPLTIVAPLAKELVSFVE 306
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1003319039|gb|KXW59290.1| (ribosomal large subunit pseudouridine synthase C [Ferrovum sp. Z-31]) HSP 1 Score: 88.5817 bits (218), Expect = 9.894e-18 Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 0
Query: 11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPG 103
+L+ +LTGRTHQIRVHL HLG P+ GDD Y + D+ N L RLG KR+ LHA L+FVHP Q PL APLP + + + G G
Sbjct: 253 TLLEARLLTGRTHQIRVHLAHLGFPIAGDDKYGNYDW---NHQLTRLGFKRMFLHAARLSFVHPLDQRPLVFEAPLPLPLAQILTRLAKSGLG 342 The following BLAST results are available for this feature:
BLAST of EWM21217.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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