EWM21217.1, cds9455 (CDS) Nannochloropsis gaditana

Overview
NameEWM21217.1
Unique Namecds9455
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:402015..402111 +
Alignment locationKK037253.1:402354..402428 +
Alignment locationKK037253.1:402634..402786 +
Alignment locationKK037253.1:402999..403186 +

Link to JBrowse

Properties
Property NameValue
Start range402015
Start range.
Protein idEWM21217.1
Productpseudouridine family
Partialtrue
Orig transcript idgnl|cribi|Naga_101418g2.2151.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:402015..402111 +
KK037253.1supercontigKK037253.1:402354..402428 +
KK037253.1supercontigKK037253.1:402634..402786 +
KK037253.1supercontigKK037253.1:402999..403186 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|585101325|gb|EWM21217.1| (pseudouridine family, partial [Nannochloropsis gaditana])

HSP 1 Score: 340.117 bits (871), Expect = 3.898e-118
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGATGGEAAEARDLEEEEWDEQD 170
            VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGATGGEAAEARDLEEEEWDEQD
Sbjct:    1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPGPTGKHEDSRKLLRLLRDGEPLTPALGHDVASPVPSTAIASNAPSIGATGGEAAEARDLEEEEWDEQD 170          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1085104027|gb|OGT01214.1| (RNA pseudouridine synthase [Gallionellales bacterium RBG_16_57_15])

HSP 1 Score: 91.6633 bits (226), Expect = 4.167e-19
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = 0
Query:    5 SLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDM 90
            SLP   SL+  ++ TGRTHQIRVHL HLG P+ GDD Y   DF R N  L + GLKR+ LHA+S+AF HP    PL L APLP+D+
Sbjct:  224 SLPA-FSLLEAQLKTGRTHQIRVHLAHLGFPIAGDDKY--GDFAR-NKALMKQGLKRMFLHAHSIAFAHPLTGEPLQLTAPLPKDL 305          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1082642234|gb|OFZ68904.1| (RNA pseudouridine synthase [Betaproteobacteria bacterium RBG_16_56_24])

HSP 1 Score: 90.1225 bits (222), Expect = 1.585e-18
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   10 ISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDM 90
             SL+  ++ TGRTHQIRVHL+HLG P+ GDD Y   DF R    ++R GLKR+ LHAYS+AF HP     + L+APLP+++
Sbjct:  225 FSLLEAQLKTGRTHQIRVHLSHLGFPIAGDDKY--GDFARNKVLMKR-GLKRMFLHAYSIAFAHPLTGEAMRLVAPLPKEL 302          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|500481279|ref|WP_011944206.1| (pseudouridine synthase [Thermotoga petrophila] >gi|147736462|gb|ABQ47802.1| ribosomal large subunit pseudouridine synthase C [Thermotoga petrophila RKU-1])

HSP 1 Score: 89.7373 bits (221), Expect = 1.792e-18
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0
Query:    1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFV 97
            VS  SL R +SL+RV+I TGR HQIR HL+ +G PV+GDD Y    F R+    +R GLKR+ LH+Y + F+ P  +      APLP D+LSV  F+
Sbjct:  198 VSVKSL-RDVSLLRVKIHTGRKHQIRRHLSQIGFPVVGDDTYGDRHFNRE--FRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDDLLSVLNFL 291          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|740211920|ref|WP_038053783.1| (pseudouridine synthase [Thermotoga sp. Mc24] >gi|723259439|gb|KHC90901.1| RluA family pseudouridine synthase [Thermotoga sp. Mc24])

HSP 1 Score: 89.7373 bits (221), Expect = 1.830e-18
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0
Query:    1 VSSPSLPRRISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFV 97
            VS  SL R +SL+RV+I TGR HQIR HL+ +G PV+GDD Y    F R+    +R GLKR+ LH+Y + F+ P  +      APLP D+LSV  F+
Sbjct:  198 VSVKSL-RDVSLLRVKIHTGRKHQIRRHLSQIGFPVVGDDTYGDRHFNRE--FRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDDLLSVLNFL 291          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1085071755|gb|OGS71305.1| (RNA pseudouridine synthase [Gallionellales bacterium GWA2_60_142])

HSP 1 Score: 88.9669 bits (219), Expect = 4.567e-18
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   10 ISLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDM 90
             SL+  E+ TGRTHQIRVHL+HLG P+ GDD Y   DF R N  L + GLKR+ LHA+S++F HP    PL + APLP+++
Sbjct:  230 FSLLEAELKTGRTHQIRVHLSHLGFPIAGDDKY--GDFAR-NRQLIKQGLKRMFLHAHSISFNHPLTGEPLQITAPLPQEL 307          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1055951784|ref|WP_067493671.1| (RluA family pseudouridine synthase [Ferrovum sp. PN-J185] >gi|1003314677|gb|KXW56802.1| ribosomal large subunit pseudouridine synthase C [Ferrovum sp. PN-J185])

HSP 1 Score: 88.5817 bits (218), Expect = 5.407e-18
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0
Query:   11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQ 95
            SL++V ++TGRTHQIRVHL+H+GHP+ GDD Y   DF+      +R  LKR+ LHA  L F+HP     +TL APLP+++    Q
Sbjct:  228 SLLKVNLITGRTHQIRVHLSHIGHPLAGDDKY--GDFSWNREMHQRFSLKRLFLHAALLEFIHPITNEKVTLDAPLPKELTQFLQ 310          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|917255519|ref|WP_051862231.1| (MULTISPECIES: RluA family pseudouridine synthase [Ferrovum])

HSP 1 Score: 88.1965 bits (217), Expect = 9.140e-18
Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPG 103
            +L+   +LTGRTHQIRVHL HLG P+ GDD Y + D+   N  L RLG KR+ LHA  L+FVHP  Q PL   APLP  +  +   +   G G
Sbjct:  228 TLLEARLLTGRTHQIRVHLAHLGFPIAGDDKYGNYDW---NHQLTRLGFKRMFLHAARLSFVHPLDQRPLVFEAPLPLPLAQILTRLAKSGLG 317          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1011805543|ref|WP_062625926.1| (RluA family pseudouridine synthase [Ferriphaselus amnicola] >gi|800136885|dbj|GAO32663.1| ribosomal large subunit pseudouridine synthase C [Ferriphaselus amnicola])

HSP 1 Score: 88.1965 bits (217), Expect = 9.344e-18
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 0
Query:   11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQ 95
            +L+  E+ TGRTHQIRVHL+HLG+P+ GDD Y   DF    T L + GLKR+ LHA+S++F HP    PLT++APL ++++S  +
Sbjct:  225 TLLEAELKTGRTHQIRVHLSHLGYPIAGDDKY--GDFALNKT-LMKQGLKRMFLHAHSISFNHPLSGEPLTIVAPLAKELVSFVE 306          
BLAST of EWM21217.1 vs. NCBI_GenBank
Match: gi|1003319039|gb|KXW59290.1| (ribosomal large subunit pseudouridine synthase C [Ferrovum sp. Z-31])

HSP 1 Score: 88.5817 bits (218), Expect = 9.894e-18
Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   11 SLVRVEILTGRTHQIRVHLTHLGHPVLGDDVYCSADFTRKNTHLRRLGLKRVLLHAYSLAFVHPALQTPLTLLAPLPRDMLSVAQFVLSKGPG 103
            +L+   +LTGRTHQIRVHL HLG P+ GDD Y + D+   N  L RLG KR+ LHA  L+FVHP  Q PL   APLP  +  +   +   G G
Sbjct:  253 TLLEARLLTGRTHQIRVHLAHLGFPIAGDDKYGNYDW---NHQLTRLGFKRMFLHAARLSFVHPLDQRPLVFEAPLPLPLAQILTRLAKSGLG 342          
The following BLAST results are available for this feature:
BLAST of EWM21217.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101325|gb|EWM21217.1|3.898e-118100.00pseudouridine family, partial [Nannochloropsis gad... [more]
gi|1085104027|gb|OGT01214.1|4.167e-1956.98RNA pseudouridine synthase [Gallionellales bacteri... [more]
gi|1082642234|gb|OFZ68904.1|1.585e-1853.09RNA pseudouridine synthase [Betaproteobacteria bac... [more]
gi|500481279|ref|WP_011944206.1|1.792e-1848.45pseudouridine synthase [Thermotoga petrophila] >gi... [more]
gi|740211920|ref|WP_038053783.1|1.830e-1848.45pseudouridine synthase [Thermotoga sp. Mc24] >gi|7... [more]
gi|1085071755|gb|OGS71305.1|4.567e-1854.32RNA pseudouridine synthase [Gallionellales bacteri... [more]
gi|1055951784|ref|WP_067493671.1|5.407e-1849.41RluA family pseudouridine synthase [Ferrovum sp. P... [more]
gi|917255519|ref|WP_051862231.1|9.140e-1849.46MULTISPECIES: RluA family pseudouridine synthase [... [more]
gi|1011805543|ref|WP_062625926.1|9.344e-1850.59RluA family pseudouridine synthase [Ferriphaselus ... [more]
gi|1003319039|gb|KXW59290.1|9.894e-1849.46ribosomal large subunit pseudouridine synthase C [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9486rna9486Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications