rna9471, rna9471 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9471
Unique Name	rna9471
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1226
Alignment location	KK037253.1:363609..365590 -

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Properties


Property Name	Value
Product	Major facilitator superfamily domain, general substrate transporter
Orig transcript id	gnl\|cribi\|Naga_101077g1.4286.mrna
Orig protein id	gnl\|cribi\|Naga_101077g1.4286
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:363609..365590 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101077g1	gene9192	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9471	rna9471-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21233.1	cds9440	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:363609..365590-
coding sequence from alignment at KK037253.1:363609..365590-

mRNA sequence

>rna9471 ID=rna9471|Name=rna9471|organism=Nannochloropsis gaditana|type=mRNA|length=1226bp
CCTCAGTGGGGCATCCCCGACCTGGCCTTCATACTCGGTCAGAACGTGCT
CGACGCTTTCCTGGAGGGCTTCCGGCAGCTGCCCCTGCAAATCCTCTACC
TGGGCTTCTGCCCCAAGGGCGCCGAGGGCACCACCCTCGCCACCCTCCAG
ACCTTCAACTCCCTCGCCATCATGACCGGGAACAACCTCAGCCTCCTCGC
CCTCCGGATCTGGCCCGTGGACGAACCGTCGGTGGAACAAGGGCACTGGG
GGGGCATCTGGAAGGTCTCCCTGCTCACGGCCCTCGCCCAGGTGCTTGGT
TTGATCGGCCTGCCCTGGCTCCCCCGGAACGTCCACCACCAGCGGGAGAG
CCAAGGAAAAGGCCGAGACCGTCGGAATTTGTGGGGGGGGCGGGCCTTGG
TGGCCTTCGTGGTGCTGGCCTTCTGTTGGACGGTGATTTTGGACGTGGTG
ACGATCGTTCAAGAGTTCTAAGCCATGCCTTTCCGTGGAAAGTTTCCATC
CCTAGGGGGGCGGTGGCAAGGGGTTGCGCCCGGGGGGGGAAACGTCTGGG
GCAGGGGACGACGAGGGAGGGTCTCGGGAGCGTAGAAGGTCCTCCCACTG
GCCCGGTCTAGGCCGTTTCCAGGAGGGAAGGAAAGGAGAAGGCAGTGTAA
ATACAGAGGCAAAGGGTGGTGAGGGTTGGGGAGGGGAGGGATTTCATAGG
GCGACAAGAGCGTCTGGCGTGGGGCGGGGAAAGTGACGAGGGGGGAGAGT
GCAACCGATCAATGACTCGGCAGGTGCTAGGGGCAGGCCCCAGATGGGGA
TATGACCCTGCCAGCTGCGGGCGAGACCGGTCTGAAAGAGAGGACGTGGC
GTGGAGAGGCCGCCTTCCATAGCAGGATCGCATGCTCGTATCGCTTCGTC
CTCCTGGACTTTGGGTCGGAGGAAAGCAAAGGGCACAGTAGCGCGGGCGG
CGGATCAATTAGCATACATAAGCACCACCGATTTTGTAGCAGGGATTATG
CAGGGATTCGGATGTCTCGAGTTAGGACTGAAGCTATCAGCGGGAAGCGC
AGACGGCGTTTCGCGCACTTAGGTGAGAATGGAAGGCAAAGAAGGACTGA
AACTGACGAGCGGACGCCAAGAAGCTGTGGAGTGTGCACGATAAAAATAT
TAAAAAATAGCAAAAGAATGCTTGCAAGTAAAATTCTCTCCGGACGAAGG
AAAAAAAAGCATCGAGCACAGACGCA

protein sequence of rna9471

>rna9471-protein ID=rna9471-protein|Name=rna9471|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWA
HEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTS
TFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAH
QRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAG
KALV

mRNA from alignment at KK037253.1:363609..365590-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9471 ID=rna9471|Name=rna9471|organism=Nannochloropsis gaditana|type=mRNA|length=1982bp|location=Sequence derived from alignment at KK037253.1:363609..365590- (Nannochloropsis gaditana)
TTTGTCGGGGCGGTGAAAGCTATGATTTTCTTTGCTTTGGAGTACAATGC
GCTGTGCTGAAAGCCACGGGGATCATGTGGCTTCCTCCGATCGGACAATG
GAAAAGGAAAGAATCTTGGGAGGACCGCCTGCATGATGGGAGGGGTTGGT
TGGATAGCAGATGCGTATCCATCACCTTTCATACGTTCACAGGTCCAAAC
ATCGGCATGCAGGCCCTCTCACCAGCCATGAAATTAGCGCCGACCTCGAA
CGCACCTCCCATCTAGAGTTTGGCGTTGATTGGGGAAAGCAGTAGGATGA
CTCCAGCGACTCCTAAACCTGTGGGGCCGACAGGTACCTCAGCGGCCCAT
GCCCACACCCTGGCCGGGGAGGATAGCGACCACCATACAAAGGCCATTGA
AATGGGTGACCTCCCTTCCGAAAATGCGGTCTACGACGCCTGGGCTCATG
AAGAGGACGGGGAAGAACGCACCGCCATCCCTCTCGCCGTGGCCTCTCCC
TTCCCGGGCAAGCATTCGCGAGCCACCCTGATCAACCCGTGGAGCCGCAT
CAATTGGGGCATTACTGTCGGAACCTTTGTGTACAATCTAACTAGCACCT
TTTTGGTCATCCCCATGGGGTTCTACGTGGTGCAAGACCTGATGATGGAC
GGAAGGGCCCTGAACGTTGTGCAAAGCATGCTGGTAGGTTGGGGGTTGCG
TTGGACAAGCGTGGATGCGAGGGTGATGGTGAAGATGGAGTGCGCCCTCT
ACCTCTCTCTCGGTCCACACACAACGCTCCTGCCTGCGCTGGGGATGCAA
AGGCCACAGACCCCCCCCCCCGGCCCTCCCTCGTCTTGCCTCGACAAGCC
CACCTCCGAGACTCATCCTTTCCCACCTCTGCTCCCACTCCCTATCTCCC
TTCCACCCTCAGCTCCTCCCTCAGGCCCTCCAGCTCCCCTTGGGCCTTCT
TTCAGATTGTGTGCCCATCGCTCATCAGCGCCGGAAGCCGTACATCATCA
TTGGTGAGTCGCGGGAGAGAGGGAGGGAGGGGGGGAGGGAGTTAGGGTCC
CTGTGATGAACAGGAAGGGAGTCGGCGCAAAAGGTGGAGACCGAAGGAAG
ATGATCTCCTGTTAAAGCCAGGCTGGGACTGTGGGCACTGGCACTTGCCC
CTCCCTCCGCCCCTAAAGTCCATCCTACCTCCCCTCCCTCCGTCCCTCCC
TCCAATTTGTCCCTCCCCTTTCCCCCCTCCGCCCCGCCTTCCTCCTTTGT
TTCTTTCCATTTTCTTGGTCCCTTTCTCCCCTCTCGCATCCATGGAAGTC
GTGAATTTCCCGCCACTGCAAGAGTTGCCCCCCCCTTCCTTCCCCCCCTC
CCCTCTCCTCCCTCCATGGCACGCCCCCCCGAAACTCGAAGGGACCATTG
ACAGTGCTCCTCCTTCCCTCCCTCCCTCCCTTTCTCCCTCCCTCCCTCCT
CCAGGCTGGCTGATCAATCTGGCCGCGATGGCCGCCCTCGCCGCCGTGGA
CACGCCCAGCATCAGCATTCTCTTGCCCCTGGTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGTAGGAAGCGTCGGATATGCGGTGAAGGCTTTTTGTTTGC
AAGGAGCTGCTTGACTACGCCTGGCACGAGACATCTAGAACGCCTCGGGG
TCCCTCCCTCCCTCCCTCCCTCCTTCCCTGTTTCCCTCCTTCCCTCCTTA
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTTGTCCCTCTCGCTCCCGC
TTTCCTTCCTTCTTTTCTACCCATTTGAGGGACAACCCCAAAAACGCAAG
CGACTTAACCTCCTCCCTCCCTCCCTCCCTCCCTCCTCGCTCCCTCCCTC
GCTCCCTCCCTCCCTCCCTCCTCGCTCCCTCCCTCGCTCCCTCCCTCCCT
CCCTCCTCCCTCCCTTTTCTCTCAGGTGTTCCTCTCCACCTGCGGAGGGC
AGCTAATCGACATCGCCGGGAAGGCTCTTGTT

Coding sequence (CDS) from alignment at KK037253.1:363609..365590-

>rna9471 ID=rna9471|Name=rna9471|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at KK037253.1:363609..365590- (Nannochloropsis gaditana)
GTGTTCCTCTCCACCTGCGGAGGGCAGCTAATCGACATCGCCGGGAAGGC
TCTTGTTGCTGGCTGATCAATCTGGCCGCGATGGCCGCCCTCGCCGCCGT
GGACACGCCCAGCATCAGCATTCTCTTGCCCCTGCTCCTCCCTCAGGCCC
TCCAGCTCCCCTTGGGCCTTCTTTCAGATTGTGTGCCCATCGCTCATCAG
CGCCGGAAGCCGTACATCATCATTGATGACTCCAGCGACTCCTAAACCTG
TGGGGCCGACAGGTACCTCAGCGGCCCATGCCCACACCCTGGCCGGGGAG
GATAGCGACCACCATACAAAGGCCATTGAAATGGGTGACCTCCCTTCCGA
AAATGCGGTCTACGACGCCTGGGCTCATGAAGAGGACGGGGAAGAACGCA
CCGCCATCCCTCTCGCCGTGGCCTCTCCCTTCCCGGGCAAGCATTCGCGA
GCCACCCTGATCAACCCGTGGAGCCGCATCAATTGGGGCATTACTGTCGG
AACCTTTGTGTACAATCTAACTAGCACCTTTTTGGTCATCCCCATGGGGT
TCTACGTGGTGCAAGACCTGATGATGGACGGAAGGGCCCTGAACGTTGTG
CAAAGCATGCTGGTGTTCCTCTCCACCTGCGGAGGGCAGCTAATCGACAT
CGCCGGGAAGGCTCTTGTTGCTGGCTGATCAATCTGGCCGCGATGGCCGC
CCTCGCCGCCGTGGACACGCCCAGCATCAGCATTCTCTTGCCCCTGCTCC
TCCCTCAGGCCCTCCAGCTCCCCTTGGGCCTTCTTTCAGATTGTGTGCCC
ATCGCTCATCAGCGCCGGAAGCCGTACATCATCATTGATGACTCCAGCGA
CTCCTAAACCTGTGGGGCCGACAGGTACCTCAGCGGCCCATGCCCACACC
CTGGCCGGGGAGGATAGCGACCACCATACAAAGGCCATTGAAATGGGTGA
CCTCCCTTCCGAAAATGCGGTCTACGACGCCTGGGCTCATGAAGAGGACG
GGGAAGAACGCACCGCCATCCCTCTCGCCGTGGCCTCTCCCTTCCCGGGC
AAGCATTCGCGAGCCACCCTGATCAACCCGTGGAGCCGCATCAATTGGGG
CATTACTGTCGGAACCTTTGTGTACAATCTAACTAGCACCTTTTTGGTCA
TCCCCATGGGGTTCTACGTGGTGCAAGACCTGATGATGGACGGAAGGGCC
CTGAACGTTGTGCAAAGCATGCTGGTGTTCCTCTCCACCTGCGGAGGGCA
GCTAATCGACATCGCCGGGAAGGCTCTTGTTGCTGGCTGATCAATCTGGC
CGCGATGGCCGCCCTCGCCGCCGTGGACACGCCCAGCATCAGCATTCTCT
TGCCCCTGCTCCTCCCTCAGGCCCTCCAGCTCCCCTTGGGCCTTCTTTCA
GATTGTGTGCCCATCGCTCATCAGCGCCGGAAGCCGTACATCATCATTGA
TGACTCCAGCGACTCCTAAACCTGTGGGGCCGACAGGTACCTCAGCGGCC
CATGCCCACACCCTGGCCGGGGAGGATAGCGACCACCATACAAAGGCCAT
TGAAATGGGTGACCTCCCTTCCGAAAATGCGGTCTACGACGCCTGGGCTC
ATGAAGAGGACGGGGAAGAACGCACCGCCATCCCTCTCGCCGTGGCCTCT
CCCTTCCCGGGCAAGCATTCGCGAGCCACCCTGATCAACCCGTGGAGCCG
CATCAATTGGGGCATTACTGTCGGAACCTTTGTGTACAATCTAACTAGCA
CCTTTTTGGTCATCCCCATGGGGTTCTACGTGGTGCAAGACCTGATGATG
GACGGAAGGGCCCTGAACGTTGTGCAAAGCATGCTGGTGTTCCTCTCCAC
CTGCGGAGGGCAGCTAATCGACATCGCCGGGAAGGCTCTTGTTGCTGGCT
GATCAATCTGGCCGCGATGGCCGCCCTCGCCGCCGTGGACACGCCCAGCA
TCAGCATTCTCTTGCCCCTGCTCCTCCCTCAGGCCCTCCAGCTCCCCTTG
GGCCTTCTTTCAGATTGTGTGCCCATCGCTCATCAGCGCCGGAAGCCGTA
CATCATCATTGATGACTCCAGCGACTCCTAAACCTGTGGGGCCGACAGGT
ACCTCAGCGGCCCATGCCCACACCCTGGCCGGGGAGGATAGCGACCACCA
TACAAAGGCCATTGAAATGGGTGACCTCCCTTCCGAAAATGCGGTCTACG
ACGCCTGGGCTCATGAAGAGGACGGGGAAGAACGCACCGCCATCCCTCTC
GCCGTGGCCTCTCCCTTCCCGGGCAAGCATTCGCGAGCCACCCTGATCAA
CCCGTGGAGCCGCATCAATTGGGGCATTACTGTCGGAACCTTTGTGTACA
ATCTAACTAGCACCTTTTTGGTCATCCCCATGGGGTTCTACGTGGTGCAA
GACCTGATGATGGACGGAAGGGCCCTGAACGTTGTGCAAAGCATGCTG

Synonyms

Publications