EWM21233.1, cds9440 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585101350|gb|EWM21233.1| (Major facilitator superfamily domain, general substrate transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 416.387 bits (1069), Expect = 2.653e-147 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query: 1 MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV
Sbjct: 1 MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585110165|gb|EWM27841.1| (folate biopterin transporter [Nannochloropsis gaditana]) HSP 1 Score: 158.688 bits (400), Expect = 5.400e-42 Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 0
Query: 27 SDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
+ HTK I SEN Y WA EE R P L++PWS +N IT+G F++ LTSTF +P+ FYV+++L M+ A+NV Q M LPQALQ+P+GLL+DCVPI +RRK Y+++GWL+++A+M ALA V P IS L+ L+FLS GGQ++D++ +AL+
Sbjct: 173 TSQHTKLI------SENNSYCRWAEEE---ARYTDP-------------EQLVSPWSSLNVAITLGAFLFQLTSTFFSVPLAFYVIKNLGMNAAAINVAQQMTQLPQALQIPIGLLTDCVPIKKRRRKYYVLLGWLLHIASMTALAIVGEPDISSLVGLIFLSFLGGQIMDLSQRALI 328
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585110164|gb|EWM27840.1| (folate biopterin transporter [Nannochloropsis gaditana]) HSP 1 Score: 157.918 bits (398), Expect = 1.775e-41 Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 0
Query: 27 SDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
+ HTK I SEN Y WA EE R P L++PWS +N IT+G F++ LTSTF +P+ FYV+++L M+ A+NV Q M LPQALQ+P+GLL+DCVPI +RRK Y+++GWL+++A+M ALA V P IS L+ L+FLS GGQ++D++ +AL+
Sbjct: 173 TSQHTKLI------SENNSYCRWAEEE---ARYTDP-------------EQLVSPWSSLNVAITLGAFLFQLTSTFFSVPLAFYVIKNLGMNAAAINVAQQMTQLPQALQIPIGLLTDCVPIKKRRRKYYVLLGWLLHIASMTALAIVGEPDISSLVGLIFLSFLGGQIMDLSQRALI 328
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585105320|gb|EWM24033.1| (folate biopterin transporter [Nannochloropsis gaditana]) HSP 1 Score: 88.5817 bits (218), Expect = 5.839e-17 Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 75 RATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
RA+LI+ +S N + + + TF P+ Y V L + LN+ +ML LP + ++ GLLSDCVPI +RRKPY +IGW +A LA++ PS++ L+ + F S CG L D+ A++
Sbjct: 125 RASLISMYSLQNSALLMSYWTIGFAMTFTGTPLTAYAVNKLNVGPAQLNIAGTMLALPWSFKVLYGLLSDCVPIMGKRRKPYFVIGWSAFVAMNLGLASLGEPSLNALIGMGFFSVCGYMLADVMCDAII 254
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|299471398|emb|CBN79351.1| (folate/biopterin transporter [Ectocarpus siliculosus]) HSP 1 Score: 77.7962 bits (190), Expect = 2.691e-13 Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 0
Query: 73 HSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
+R +N +S + I + F + L P+ +Y++ DL + V ++ LP + + G LSDCVPI +RKPY++IGW +++ + +ALA + TP ++ L FLS CG L D+ A+V
Sbjct: 114 RNRDEELNIYSLASLAIVMSYFSIGVALELLYTPIAYYLIDDLGAESGVYTVWVILVTLPWSFKAAYGFLSDCVPIRGLKRKPYMLIGWGVHILSNSALAIMGTPGEDAVVILSFLSACGYLLSDVMTDAIV 245
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|1210518133|dbj|GAX23064.1| (hypothetical protein FisN_15Hh036 [Fistulifera solaris]) HSP 1 Score: 70.8626 bits (172), Expect = 7.857e-11 Identity = 38/119 (31.93%), Postives = 62/119 (52.10%), Query Frame = 0
Query: 86 NWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
N I + F + L P+ Y ++DL +NV+ +++ +P ++ G LSDC+PI+ RRKPY + GW++ + + L PSI + + LVF T G L D+ AL+
Sbjct: 214 NLAIPMSYFCIGVALQLLRTPLIVYFIEDLNATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIPSIPVCILLVFTQTAGYMLADVMTDALI 332
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|1210515426|dbj|GAX25667.1| (hypothetical protein FisN_15Lh036 [Fistulifera solaris]) HSP 1 Score: 70.4774 bits (171), Expect = 9.236e-11 Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 0
Query: 86 NWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
N I F + L P+ Y ++DL +NV+ +++ +P ++ G LSDC+PI+ RRKPY + GW++ + + L PSI + + LVF T G L D+ AL+
Sbjct: 214 NLAIPTSYFCIGVALQLLRTPLIVYFIEDLNATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIPSIPVCILLVFTQTAGYMLADVMTDALI 332
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|298712589|emb|CBJ33289.1| (Biopterin transport-related protein BT1 [Ectocarpus siliculosus]) HSP 1 Score: 64.6994 bits (156), Expect = 8.610e-9 Identity = 36/125 (28.80%), Postives = 61/125 (48.80%), Query Frame = 0
Query: 80 NPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
N W+ N + + F FL P+ +Y+V + N++ ++ LP + +L G +SD PI RRKPY I+GWL+ + +A + PSI +L + + G L D+ A++
Sbjct: 69 NIWAVQNRAVVMSYFCVGFAIRFLTTPISYYMVNVIGASPGQQNIMLTLAQLPWSFKLVYGFISDNFPIGGMRRKPYFIMGWLVYVLTNLYVATKEVPSIQLLAVGSLIMSMGFMLSDVTTDAIL 193
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|698810118|ref|XP_009838088.1| (hypothetical protein H257_12543 [Aphanomyces astaci] >gi|574106891|gb|ETV72406.1| hypothetical protein H257_12543 [Aphanomyces astaci]) HSP 1 Score: 62.3882 bits (150), Expect = 6.631e-8 Identity = 42/135 (31.11%), Postives = 65/135 (48.15%), Query Frame = 0
Query: 41 SENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVD 175
S++ +YD + + E A+ A P P S L + G+ G YNL+ FL + M+G L +++ L + ++ +G+LSDCVP+ RRKPY+ +GW IN M LA+VD
Sbjct: 19 SDDKLYDGFKTPDTIEAGGALR---AGPPPSYSSLDVLALMSQYASMGLLYGV-TYNLSYPFLTVY--------FHMEGTQLTSANALMTLAWSFKVFIGMLSDCVPVFGLRRKPYMFVGWTINAICMLVLASVD 141
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|1129204091|gb|OLQ06654.1| (hypothetical protein AK812_SmicGene10053 [Symbiodinium microadriaticum]) HSP 1 Score: 61.6178 bits (148), Expect = 1.143e-7 Identity = 30/95 (31.58%), Postives = 54/95 (56.84%), Query Frame = 0
Query: 79 INPWSRINWGITVGTFVYN-LTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALA 172
I+ W+R + G+ +G F+ LT+ + GF++ + +D ++ + ++ LPQ L LP G L+DC PI RKPY ++ W + A+ A++
Sbjct: 174 ISIWTRKSIGVVIGGFLLAFLTAICSAVTYGFFLGY-MGLDSYVMSSITQLMKLPQVLLLPFGFLTDCCPIRGNHRKPYFLLSWCLAGCALLAMS 267 The following BLAST results are available for this feature:
BLAST of EWM21233.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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