EWM21233.1, cds9440 (CDS) Nannochloropsis gaditana

Overview
NameEWM21233.1
Unique Namecds9440
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:364908..365294 -
Alignment locationKK037253.1:364588..364678 -
Alignment locationKK037253.1:364060..364136 -
Alignment locationKK037253.1:363609..363665 -

Link to JBrowse

Properties
Property NameValue
Start range363609
Start range.
Protein idEWM21233.1
ProductMajor facilitator superfamily domain, general substrate transporter
Partialtrue
Orig transcript idgnl|cribi|Naga_101077g1.4286.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:364908..365294 -
KK037253.1supercontigKK037253.1:364588..364678 -
KK037253.1supercontigKK037253.1:364060..364136 -
KK037253.1supercontigKK037253.1:363609..363665 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR004324FBT
Homology
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585101350|gb|EWM21233.1| (Major facilitator superfamily domain, general substrate transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 416.387 bits (1069), Expect = 2.653e-147
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV
Sbjct:    1 MTPATPKPVGPTGTSAAHAHTLAGEDSDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585110165|gb|EWM27841.1| (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 158.688 bits (400), Expect = 5.400e-42
Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 0
Query:   27 SDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            +  HTK I      SEN  Y  WA EE    R   P               L++PWS +N  IT+G F++ LTSTF  +P+ FYV+++L M+  A+NV Q M  LPQALQ+P+GLL+DCVPI  +RRK Y+++GWL+++A+M ALA V  P IS L+ L+FLS  GGQ++D++ +AL+
Sbjct:  173 TSQHTKLI------SENNSYCRWAEEE---ARYTDP-------------EQLVSPWSSLNVAITLGAFLFQLTSTFFSVPLAFYVIKNLGMNAAAINVAQQMTQLPQALQIPIGLLTDCVPIKKRRRKYYVLLGWLLHIASMTALAIVGEPDISSLVGLIFLSFLGGQIMDLSQRALI 328          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585110164|gb|EWM27840.1| (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 157.918 bits (398), Expect = 1.775e-41
Identity = 81/178 (45.51%), Postives = 114/178 (64.04%), Query Frame = 0
Query:   27 SDHHTKAIEMGDLPSENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            +  HTK I      SEN  Y  WA EE    R   P               L++PWS +N  IT+G F++ LTSTF  +P+ FYV+++L M+  A+NV Q M  LPQALQ+P+GLL+DCVPI  +RRK Y+++GWL+++A+M ALA V  P IS L+ L+FLS  GGQ++D++ +AL+
Sbjct:  173 TSQHTKLI------SENNSYCRWAEEE---ARYTDP-------------EQLVSPWSSLNVAITLGAFLFQLTSTFFSVPLAFYVIKNLGMNAAAINVAQQMTQLPQALQIPIGLLTDCVPIKKRRRKYYVLLGWLLHIASMTALAIVGEPDISSLVGLIFLSFLGGQIMDLSQRALI 328          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|585105320|gb|EWM24033.1| (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 88.5817 bits (218), Expect = 5.839e-17
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 0
Query:   75 RATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            RA+LI+ +S  N  + +  +      TF   P+  Y V  L +    LN+  +ML LP + ++  GLLSDCVPI  +RRKPY +IGW   +A    LA++  PS++ L+ + F S CG  L D+   A++
Sbjct:  125 RASLISMYSLQNSALLMSYWTIGFAMTFTGTPLTAYAVNKLNVGPAQLNIAGTMLALPWSFKVLYGLLSDCVPIMGKRRKPYFVIGWSAFVAMNLGLASLGEPSLNALIGMGFFSVCGYMLADVMCDAII 254          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|299471398|emb|CBN79351.1| (folate/biopterin transporter [Ectocarpus siliculosus])

HSP 1 Score: 77.7962 bits (190), Expect = 2.691e-13
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 0
Query:   73 HSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
             +R   +N +S  +  I +  F   +    L  P+ +Y++ DL  +     V   ++ LP + +   G LSDCVPI   +RKPY++IGW +++ + +ALA + TP    ++ L FLS CG  L D+   A+V
Sbjct:  114 RNRDEELNIYSLASLAIVMSYFSIGVALELLYTPIAYYLIDDLGAESGVYTVWVILVTLPWSFKAAYGFLSDCVPIRGLKRKPYMLIGWGVHILSNSALAIMGTPGEDAVVILSFLSACGYLLSDVMTDAIV 245          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|1210518133|dbj|GAX23064.1| (hypothetical protein FisN_15Hh036 [Fistulifera solaris])

HSP 1 Score: 70.8626 bits (172), Expect = 7.857e-11
Identity = 38/119 (31.93%), Postives = 62/119 (52.10%), Query Frame = 0
Query:   86 NWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            N  I +  F   +    L  P+  Y ++DL      +NV+ +++ +P   ++  G LSDC+PI+  RRKPY + GW++ + +   L     PSI + + LVF  T G  L D+   AL+
Sbjct:  214 NLAIPMSYFCIGVALQLLRTPLIVYFIEDLNATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIPSIPVCILLVFTQTAGYMLADVMTDALI 332          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|1210515426|dbj|GAX25667.1| (hypothetical protein FisN_15Lh036 [Fistulifera solaris])

HSP 1 Score: 70.4774 bits (171), Expect = 9.236e-11
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 0
Query:   86 NWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            N  I    F   +    L  P+  Y ++DL      +NV+ +++ +P   ++  G LSDC+PI+  RRKPY + GW++ + +   L     PSI + + LVF  T G  L D+   AL+
Sbjct:  214 NLAIPTSYFCIGVALQLLRTPLIVYFIEDLNATPAEVNVLFTVMAVPWCFKVIYGFLSDCLPISGLRRKPYFMTGWVVFIVSNLILMINPIPSIPVCILLVFTQTAGYMLADVMTDALI 332          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|298712589|emb|CBJ33289.1| (Biopterin transport-related protein BT1 [Ectocarpus siliculosus])

HSP 1 Score: 64.6994 bits (156), Expect = 8.610e-9
Identity = 36/125 (28.80%), Postives = 61/125 (48.80%), Query Frame = 0
Query:   80 NPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVDTPSISILLPLVFLSTCGGQLIDIAGKALV 204
            N W+  N  + +  F       FL  P+ +Y+V  +       N++ ++  LP + +L  G +SD  PI   RRKPY I+GWL+ +     +A  + PSI +L     + + G  L D+   A++
Sbjct:   69 NIWAVQNRAVVMSYFCVGFAIRFLTTPISYYMVNVIGASPGQQNIMLTLAQLPWSFKLVYGFISDNFPIGGMRRKPYFIMGWLVYVLTNLYVATKEVPSIQLLAVGSLIMSMGFMLSDVTTDAIL 193          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|698810118|ref|XP_009838088.1| (hypothetical protein H257_12543 [Aphanomyces astaci] >gi|574106891|gb|ETV72406.1| hypothetical protein H257_12543 [Aphanomyces astaci])

HSP 1 Score: 62.3882 bits (150), Expect = 6.631e-8
Identity = 42/135 (31.11%), Postives = 65/135 (48.15%), Query Frame = 0
Query:   41 SENAVYDAWAHEEDGEERTAIPLAVASPFPGKHSRATLINPWSRINWGITVGTFVYNLTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALAAVD 175
            S++ +YD +   +  E   A+    A P P   S   L       + G+  G   YNL+  FL +           M+G  L    +++ L  + ++ +G+LSDCVP+   RRKPY+ +GW IN   M  LA+VD
Sbjct:   19 SDDKLYDGFKTPDTIEAGGALR---AGPPPSYSSLDVLALMSQYASMGLLYGV-TYNLSYPFLTVY--------FHMEGTQLTSANALMTLAWSFKVFIGMLSDCVPVFGLRRKPYMFVGWTINAICMLVLASVD 141          
BLAST of EWM21233.1 vs. NCBI_GenBank
Match: gi|1129204091|gb|OLQ06654.1| (hypothetical protein AK812_SmicGene10053 [Symbiodinium microadriaticum])

HSP 1 Score: 61.6178 bits (148), Expect = 1.143e-7
Identity = 30/95 (31.58%), Postives = 54/95 (56.84%), Query Frame = 0
Query:   79 INPWSRINWGITVGTFVYN-LTSTFLVIPMGFYVVQDLMMDGRALNVVQSMLLLPQALQLPLGLLSDCVPIAHQRRKPYIIIGWLINLAAMAALA 172
            I+ W+R + G+ +G F+   LT+    +  GF++   + +D   ++ +  ++ LPQ L LP G L+DC PI    RKPY ++ W +   A+ A++
Sbjct:  174 ISIWTRKSIGVVIGGFLLAFLTAICSAVTYGFFLGY-MGLDSYVMSSITQLMKLPQVLLLPFGFLTDCCPIRGNHRKPYFLLSWCLAGCALLAMS 267          
The following BLAST results are available for this feature:
BLAST of EWM21233.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101350|gb|EWM21233.1|2.653e-147100.00Major facilitator superfamily domain, general subs... [more]
gi|585110165|gb|EWM27841.1|5.400e-4245.51folate biopterin transporter [Nannochloropsis gadi... [more]
gi|585110164|gb|EWM27840.1|1.775e-4145.51folate biopterin transporter [Nannochloropsis gadi... [more]
gi|585105320|gb|EWM24033.1|5.839e-1736.92folate biopterin transporter [Nannochloropsis gadi... [more]
gi|299471398|emb|CBN79351.1|2.691e-1332.58folate/biopterin transporter [Ectocarpus siliculos... [more]
gi|1210518133|dbj|GAX23064.1|7.857e-1131.93hypothetical protein FisN_15Hh036 [Fistulifera sol... [more]
gi|1210515426|dbj|GAX25667.1|9.236e-1131.93hypothetical protein FisN_15Lh036 [Fistulifera sol... [more]
gi|298712589|emb|CBJ33289.1|8.610e-928.80Biopterin transport-related protein BT1 [Ectocarpu... [more]
gi|698810118|ref|XP_009838088.1|6.631e-831.11hypothetical protein H257_12543 [Aphanomyces astac... [more]
gi|1129204091|gb|OLQ06654.1|1.143e-731.58hypothetical protein AK812_SmicGene10053 [Symbiodi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9471rna9471Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications