rna9468, rna9468 (mRNA) Nannochloropsis gaditana

Overview
Namerna9468
Unique Namerna9468
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length449
Alignment locationKK037253.1:358562..359996 +

Link to JBrowse

Properties
Property NameValue
Productalpha beta hydrolase
Orig transcript idgnl|cribi|Naga_101331g2.1323.mrna
Orig protein idgnl|cribi|Naga_101331g2.1323
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:358562..359996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101331g2gene9189Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9468rna9468-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21236.1cds9437Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9468 ID=rna9468|Name=rna9468|organism=Nannochloropsis gaditana|type=mRNA|length=449bp
TTGCAGGGCTCTAGCACCTTCTTGTTGTCCCCCCGTGAAAAAGAGGAAGA
TAAATTATGGAAAAGGATCCAAGAAAAGAAATACTTTTTCATTCCCGAGC
GCCCAAGTACATCATTGTCGGTGCTGGACCTGCGGGCTGTGCATTGGCAG
CGGCCCTTGCAAAAGGACAGCAGGGCAAGGTTGTGATGGTGGAGAGAGGT
AAAGAAAAGGTGCATACACGCTTCGTGACTAAAGTCAACGACTGGGTGAA
AGCCTCCCTCCGCTCTTGGAACGCGGTACAATACCTGAGTGTTCCACATC
GCCACCTCGGGAACCGGCAGTTTGTTACTCCTCGCGGCCAAGGGAAAGGA
GGGACTGCCTTGATCAACGCCATGCAATACTCACGGGGTTACCGGAAGGA
CTATCAGGCTTGGGAAGAATGGTGGAAGATGGAGGAAATTGAGGAGTGA
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protein sequence of rna9468

>rna9468-protein ID=rna9468-protein|Name=rna9468|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MPELIGPDEKLPFMEGRGDVEEKKGKMTRRVEEAESLIGPLGEGRHRTLS
AGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCR
RPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSES
SGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGG
GYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRS
LKK
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mRNA from alignment at KK037253.1:358562..359996+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9468 ID=rna9468|Name=rna9468|organism=Nannochloropsis gaditana|type=mRNA|length=1435bp|location=Sequence derived from alignment at KK037253.1:358562..359996+ (Nannochloropsis gaditana)
TGCATGGGAACCTCAGTTGAATCATTTTTTAACGCGACGCTGATATGTAA
CTTGCTGCGTTGGGCAGGATTTTTTAAACCCCAATTTTTCCTTTCAACAC
CGACGTCTCTCATTTTGTACGTTAGACAGAGGGATTGTGTGGAAGCTCCT
TGAGCGTACCATGCCTGAATTGATCGGGCCGGACGAAAAGCTTCCCTTCA
TGGAAGGCAGAGGGGATgtagaagaaaaaaaggggaagatgacaaggaga
gtggaggaggccgaaTCCTTGATAGGACCTCTTGGTGAAGGCAGACATCG
AACCCTCTCCGCGGGTCGCCCGTCGCGCCCATcggctccagctcctcctg
cgcAATTGCCGGGGATATACCATCCGCTACACATGGAACCGGCGGGGCTC
TCACGGAAAAGTCAATTGCTACGGCAAGTATGGCCGTCGCTTCGCCAATA
CCTCTGCAGGCGACCGTCCCTGTCCCGCCTGGTGGTCTATTCCCTCATTA
CCACCGCGACTCTCATAGGGGGACTGCTGCTATCTCCATactccgcttcc
ttccgaTCCATGCTGCCGTCCaacccttttttccctccttcttctggGCC
CTCAGAGTCCTCTGGTGACCTGCCCCGTGTCTCCCTCTGGCCCCGCGGCC
ATGTTCCCTTGGCCTTGGGCGAAGAGCCGCCAGACACACCGTCCCTGATC
CCATTCTTCCCCGAGCGTGAGTAGGGAAAAACGaggaatgggggaggggg
cgaggcccGGGAAGGGACGGCGTGGACGGGAGCAAGGAataggggaaggg
ggagggaagggagatggcCCTGGTTCCAACCGCGTGCCCCCCTGGCCgcg
ttcgcgccatttttctcAATTTTCGATGTTTCCTCCCTGACATGCCCATT
CTTGCACCGGTAGCGGAGGACTGGCGCGGTACCTCGATGGTGGTGATGCC
GGGGGGTGGGTACAAGTTCCTCTCATTGGTACGTGCCTGtagcgtcctcc
ccccctccctcccctccctcccctcccgccctcgggcTCTGTGTACAGGC
GAGGGGGTGGCATAGCAGGCCCCCCGTGGACGCTCAGgagccctcttttc
cccctcctccttcccctccttcctttccttccattcctgccATCACCCCA
GTTCAAGGAGGGGGTCCGGGTGGCCAAGTGGCTctcggaagaggagggca
ttGCGGCCTTTGTGCTCCAGTACCGGCTGGGTCCCGATGGGTCAGGatgg
ccggggaggggagggagggagggagggaggaaaagagggagggagggatg
gggagaagaaggcatTTGCACCCTTCTTTCGGCGTATTTGTCGTTCTCAC
TTAgcttttgcctcctcctACGCCTTTTTAATCAGATACCACCACCCGGT
TCAGCTTCTGGACGGTCGTCGGAGCCTGAAAAAAG
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Coding sequence (CDS) from alignment at KK037253.1:358562..359996+

>rna9468 ID=rna9468|Name=rna9468|organism=Nannochloropsis gaditana|type=CDS|length=3040bp|location=Sequence derived from alignment at KK037253.1:358562..359996+ (Nannochloropsis gaditana)
ATGCCTGAATTGATCGGGCCGGACGAAAAGCTTCCCTTCATGGAAGGCAG
AGGGGATgtagaagaaaaaaaggggaagatgacaaggagagtggaggagg
ccgaaTCCTTGATAGGACCTCTTGGTGAAGGCAGACATCGAACCCTCTCC
GCGGGTCGCCCGTCGCGCCCATcggctccagctcctcctgcgcAATTGCC
GGGGATATACCATCCGCTACACATGGAACCGGCGGGGCTCTCACGGAAAA
GTCAATTGCTACGGCAAGTATGGCCGTCGCTTCGCCAATACCTCTGCAGG
CGACCGTCCCTGTCCCGCCTGGTGGTCTATTCCCTCATTACCACCGCGAC
TCTCATAGGGGGACTGCTGCTATCTCCATactccgcttccttccgaTCCA
TGCTGCCGTCCaacccttttttccctccttcttctggGCCCTCAGAGTCC
TCTGGTGACCTGCCCCGTGTCTCCCTCTGGCCCCGCGGCCATGTTCCCTT
GGCCTTGGGCGAAGAGCCGCCAGACACACCGTCCCTGATCCCATTCTTCC
CCGAGCCGGAGGACTGGCGCGGTACCTCGATGGTGGTGATGCCGGGGGGT
GGGTACAAGTTCCTCTCATTGTTCAAGGAGGGGGTCCGGGTGGCCAAGTG
GCTctcggaagaggagggcattGCGGCCTTTGTGCTCCAGTACCGGCTGG
GTCCCGATGGATACCACCACCCGGTTCAGCTTCTGGACGGTCGTCGGAGC
CTGAAAAAAGATGCCTGAATTGATCGGGCCGGACGAAAAGCTTCCCTTCA
TGGAAGGCAGAGGGGATgtagaagaaaaaaaggggaagatgacaaggaga
gtggaggaggccgaaTCCTTGATAGGACCTCTTGGTGAAGGCAGACATCG
AACCCTCTCCGCGGGTCGCCCGTCGCGCCCATcggctccagctcctcctg
cgcAATTGCCGGGGATATACCATCCGCTACACATGGAACCGGCGGGGCTC
TCACGGAAAAGTCAATTGCTACGGCAAGTATGGCCGTCGCTTCGCCAATA
CCTCTGCAGGCGACCGTCCCTGTCCCGCCTGGTGGTCTATTCCCTCATTA
CCACCGCGACTCTCATAGGGGGACTGCTGCTATCTCCATactccgcttcc
ttccgaTCCATGCTGCCGTCCaacccttttttccctccttcttctggGCC
CTCAGAGTCCTCTGGTGACCTGCCCCGTGTCTCCCTCTGGCCCCGCGGCC
ATGTTCCCTTGGCCTTGGGCGAAGAGCCGCCAGACACACCGTCCCTGATC
CCATTCTTCCCCGAGCCGGAGGACTGGCGCGGTACCTCGATGGTGGTGAT
GCCGGGGGGTGGGTACAAGTTCCTCTCATTGTTCAAGGAGGGGGTCCGGG
TGGCCAAGTGGCTctcggaagaggagggcattGCGGCCTTTGTGCTCCAG
TACCGGCTGGGTCCCGATGGATACCACCACCCGGTTCAGCTTCTGGACGG
TCGTCGGAGCCTGAAAAAAGATGCCTGAATTGATCGGGCCGGACGAAAAG
CTTCCCTTCATGGAAGGCAGAGGGGATgtagaagaaaaaaaggggaagat
gacaaggagagtggaggaggccgaaTCCTTGATAGGACCTCTTGGTGAAG
GCAGACATCGAACCCTCTCCGCGGGTCGCCCGTCGCGCCCATcggctcca
gctcctcctgcgcAATTGCCGGGGATATACCATCCGCTACACATGGAACC
GGCGGGGCTCTCACGGAAAAGTCAATTGCTACGGCAAGTATGGCCGTCGC
TTCGCCAATACCTCTGCAGGCGACCGTCCCTGTCCCGCCTGGTGGTCTAT
TCCCTCATTACCACCGCGACTCTCATAGGGGGACTGCTGCTATCTCCATa
ctccgcttccttccgaTCCATGCTGCCGTCCaacccttttttccctcctt
cttctggGCCCTCAGAGTCCTCTGGTGACCTGCCCCGTGTCTCCCTCTGG
CCCCGCGGCCATGTTCCCTTGGCCTTGGGCGAAGAGCCGCCAGACACACC
GTCCCTGATCCCATTCTTCCCCGAGCCGGAGGACTGGCGCGGTACCTCGA
TGGTGGTGATGCCGGGGGGTGGGTACAAGTTCCTCTCATTGTTCAAGGAG
GGGGTCCGGGTGGCCAAGTGGCTctcggaagaggagggcattGCGGCCTT
TGTGCTCCAGTACCGGCTGGGTCCCGATGGATACCACCACCCGGTTCAGC
TTCTGGACGGTCGTCGGAGCCTGAAAAAAGATGCCTGAATTGATCGGGCC
GGACGAAAAGCTTCCCTTCATGGAAGGCAGAGGGGATgtagaagaaaaaa
aggggaagatgacaaggagagtggaggaggccgaaTCCTTGATAGGACCT
CTTGGTGAAGGCAGACATCGAACCCTCTCCGCGGGTCGCCCGTCGCGCCC
ATcggctccagctcctcctgcgcAATTGCCGGGGATATACCATCCGCTAC
ACATGGAACCGGCGGGGCTCTCACGGAAAAGTCAATTGCTACGGCAAGTA
TGGCCGTCGCTTCGCCAATACCTCTGCAGGCGACCGTCCCTGTCCCGCCT
GGTGGTCTATTCCCTCATTACCACCGCGACTCTCATAGGGGGACTGCTGC
TATCTCCATactccgcttccttccgaTCCATGCTGCCGTCCaaccctttt
ttccctccttcttctggGCCCTCAGAGTCCTCTGGTGACCTGCCCCGTGT
CTCCCTCTGGCCCCGCGGCCATGTTCCCTTGGCCTTGGGCGAAGAGCCGC
CAGACACACCGTCCCTGATCCCATTCTTCCCCGAGCCGGAGGACTGGCGC
GGTACCTCGATGGTGGTGATGCCGGGGGGTGGGTACAAGTTCCTCTCATT
GTTCAAGGAGGGGGTCCGGGTGGCCAAGTGGCTctcggaagaggagggca
ttGCGGCCTTTGTGCTCCAGTACCGGCTGGGTCCCGATGGATACCACCAC
CCGGTTCAGCTTCTGGACGGTCGTCGGAGCCTGAAAAAAG
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Synonyms
Publications