EWM21236.1, cds9437 (CDS) Nannochloropsis gaditana

Overview
NameEWM21236.1
Unique Namecds9437
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:358722..359277 +
Alignment locationKK037253.1:359475..359539 +
Alignment locationKK037253.1:359713..359801 +
Alignment locationKK037253.1:359947..359996 +

Link to JBrowse

Properties
Property NameValue
End range.
End range359996
Protein idEWM21236.1
Productalpha beta hydrolase
Partialtrue
Orig transcript idgnl|cribi|Naga_101331g2.1323.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:358722..359277 +
KK037253.1supercontigKK037253.1:359475..359539 +
KK037253.1supercontigKK037253.1:359713..359801 +
KK037253.1supercontigKK037253.1:359947..359996 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Homology
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|585101356|gb|EWM21236.1| (alpha beta hydrolase, partial [Nannochloropsis gaditana])

HSP 1 Score: 499.59 bits (1285), Expect = 1.566e-178
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 MPELIGPDEKLPFMEGRGDVEEKKGKMTRRVEEAESLIGPLGEGRHRTLSAGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCRRPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLKK 253
            MPELIGPDEKLPFMEGRGDVEEKKGKMTRRVEEAESLIGPLGEGRHRTLSAGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCRRPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLKK
Sbjct:    1 MPELIGPDEKLPFMEGRGDVEEKKGKMTRRVEEAESLIGPLGEGRHRTLSAGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCRRPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLKK 253          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|553195709|ref|XP_005856188.1| (alpha beta hydrolase, partial [Nannochloropsis gaditana CCMP526] >gi|422292866|gb|EKU20168.1| alpha beta hydrolase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 400.593 bits (1028), Expect = 4.419e-140
Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 0
Query:    1 MPELIGPDEKLPFMEGRGDVEEKKGKMTRRVEEAESLIGPLGEGRHRTLSAGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCRRPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSL 207
            MPELIGPDEKLPF+EGRG+V EKKGKMTRRVEEAESLIGPLGEGRHRTLSAGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCRRPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSL
Sbjct:    1 MPELIGPDEKLPFVEGRGNVGEKKGKMTRRVEEAESLIGPLGEGRHRTLSAGRPSRPSAPAPPAQLPGIYHPLHMEPAGLSRKSQLLRQVWPSLRQYLCRRPSLSRLVVYSLITTATLIGGLLLSPYSASFRSMLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSL 207          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|522207265|ref|WP_020714732.1| (alpha/beta hydrolase [Acidobacteriaceae bacterium KBS 89])

HSP 1 Score: 100.138 bits (248), Expect = 2.252e-21
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 0
Query:  159 LWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            LWP G  P ALG+E  D P+L  F P   +   T +VV PGGGY+ LS+ KEG  VA+WL+ E G+AAFVLQYRLGP  YHHPV+L D +R+++
Sbjct:   40 LWPSG-APGALGDEDIDKPTLTVFLPVAANATKTGVVVAPGGGYQHLSMDKEGFAVARWLN-ERGVAAFVLQYRLGPK-YHHPVELEDAQRAIR 130          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|651255492|ref|WP_026389091.1| (1,4-beta-xylanase [Acidobacteria bacterium KBS 146])

HSP 1 Score: 93.5893 bits (231), Expect = 5.400e-19
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = 0
Query:  147 PSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            P++SSG+   V LWP G  P ALG +  D P +  F P   +   T +VV PGGGY+ L++ KEG  +A WL+ + G+AAFVL+YRLGP  YHHPV+L D +R+++
Sbjct:   23 PAQSSGN--EVLLWPAG-APGALGSDDTDKPEITVFLPTAPNPTKTGVVVAPGGGYQHLAIDKEGFAIAHWLN-DHGVAAFVLRYRLGPR-YHHPVELGDAQRAIR 123          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|494658836|ref|WP_007416780.1| (alpha/beta hydrolase [Pedosphaera parvula] >gi|223892728|gb|EEF59198.1| alpha/beta hydrolase [bacterium Ellin514])

HSP 1 Score: 91.6633 bits (226), Expect = 3.328e-18
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 0
Query:  159 LWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            LW  G  P ALG    D P+L PFFP P+   G +MVV PGGGY  L+ + EG   A WL +++G+ AFVL+YRLG  GYHHPV+L D  R+++
Sbjct:   27 LWEDG-APGALGTADKDIPTLTPFFPSPDKATGAAMVVCPGGGYGNLAPY-EGKDYALWL-KDQGVTAFVLKYRLGSAGYHHPVELQDVSRAIR 117          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|1120195682|ref|WP_073063441.1| (alpha/beta hydrolase [Aliifodinibius roseus] >gi|1110338803|emb|SHF48924.1| Acetyl esterase/lipase [Aliifodinibius roseus])

HSP 1 Score: 90.1225 bits (222), Expect = 1.581e-17
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 0
Query:  134 MLPSNPFFPPSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            MLP +  F       ES  D   +SLWP G  P A G+   DTP+L  + PE      T +V+ PGGGY  L++  EG +VA+WL+   GIAAFV++YRLG   YHHP QL D +R+++
Sbjct:   21 MLPQHEAFAQEK---ESRIDSLTLSLWPEG-APEAQGDSDLDTPTLTVYLPEKAATSQTGVVIFPGGGYAHLAMDHEGRQVAEWLN-SLGIAAFVVKYRLGTR-YHHPSQLKDAQRAIR 133          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|1113276631|gb|OJV41788.1| (1,4-beta-xylanase [Acidobacteriales bacterium 59-55])

HSP 1 Score: 89.3521 bits (220), Expect = 2.595e-17
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 0
Query:  157 VSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            V LWP G  P A G++  D P+L  + P   +   T +VV PGGGY+ LS+ KEG  VA WL+ + G+AAFVL+YRLGP  YH+P++L D +R+++
Sbjct:   38 VLLWPNG-APGAKGDQDVDKPTLTIYLPSGANATKTGVVVAPGGGYEHLSMTKEGSDVAHWLN-QRGVAAFVLKYRLGPT-YHNPIELGDAQRAMR 130          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|551213561|ref|WP_022841503.1| (endo-1,4-beta-xylanase [Acidobacteriaceae bacterium TAA166])

HSP 1 Score: 88.1965 bits (217), Expect = 5.096e-17
Identity = 53/110 (48.18%), Postives = 69/110 (62.73%), Query Frame = 0
Query:  143 PSSGPSESSGDLPRVSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            P+  PS+     P V LWP G  P A G E  D P L  F P   +   T +VV PGGGY+ LS+ KEG  VA+WL+ + G+AAFVL+YRLGP  Y +PVQL D +R+++
Sbjct:   19 PAQQPSQ-----PEVLLWPSG-APGAQGTEDVDKPELTVFLPTGPNATRTGVVVAPGGGYEHLSMDKEGFAVARWLN-DHGVAAFVLRYRLGPR-YRYPVQLGDAQRAIR 120          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|500002225|ref|WP_011682943.1| (alpha/beta hydrolase [Candidatus Solibacter usitatus] >gi|116223458|gb|ABJ82167.1| alpha/beta hydrolase [Candidatus Solibacter usitatus Ellin6076])

HSP 1 Score: 87.8113 bits (216), Expect = 8.513e-17
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0
Query:  159 LWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPDGYHHPVQLLDGRRSLK 252
            LW +G  P ALG +  D P+L P+        GT+++V PGGGY  LS+ KEG ++AKWL+   G+ AFVL+YRLGP  YHHPV+L D +R+++
Sbjct:   29 LWAQG-APGALGSDEIDKPTLAPYVVPTGRGTGTAVIVFPGGGYSGLSMDKEGDQIAKWLN-SLGVTAFVLKYRLGPK-YHHPVELGDAQRAIR 119          
BLAST of EWM21236.1 vs. NCBI_GenBank
Match: gi|1087422459|emb|SDL43416.1| (Acetyl esterase/lipase [Catalinimonas alkaloidigena])

HSP 1 Score: 87.8113 bits (216), Expect = 9.214e-17
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 0
Query:  157 VSLWPRGHVPLALGEEPPDTPSLIPFFPEPEDWRGTSMVVMPGGGYKFLSLFKEGVRVAKWLSEEEGIAAFVLQYRLGPD---GYHHPVQLLDGRRSLK 252
            V LWP G  P A G E  D P+L  F P  +   G ++VV PGGGY  L++ KEG  VA+WL+   G+AAFVL+YRLG D   GY HP  L D +R+++
Sbjct:   33 VMLWPDG-APGAKGYEAKDQPNLTVFLPPADRATGAAVVVCPGGGYHHLAMEKEGFHVAEWLN-SLGVAAFVLKYRLGSDEAGGYRHPAMLQDAQRAIR 129          
The following BLAST results are available for this feature:
BLAST of EWM21236.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101356|gb|EWM21236.1|1.566e-178100.00alpha beta hydrolase, partial [Nannochloropsis gad... [more]
gi|553195709|ref|XP_005856188.1|4.419e-14098.55alpha beta hydrolase, partial [Nannochloropsis gad... [more]
gi|522207265|ref|WP_020714732.1|2.252e-2155.32alpha/beta hydrolase [Acidobacteriaceae bacterium ... [more]
gi|651255492|ref|WP_026389091.1|5.400e-1948.111,4-beta-xylanase [Acidobacteria bacterium KBS 146... [more]
gi|494658836|ref|WP_007416780.1|3.328e-1851.06alpha/beta hydrolase [Pedosphaera parvula] >gi|223... [more]
gi|1120195682|ref|WP_073063441.1|1.581e-1744.54alpha/beta hydrolase [Aliifodinibius roseus] >gi|1... [more]
gi|1113276631|gb|OJV41788.1|2.595e-1747.921,4-beta-xylanase [Acidobacteriales bacterium 59-5... [more]
gi|551213561|ref|WP_022841503.1|5.096e-1748.18endo-1,4-beta-xylanase [Acidobacteriaceae bacteriu... [more]
gi|500002225|ref|WP_011682943.1|8.513e-1748.94alpha/beta hydrolase [Candidatus Solibacter usitat... [more]
gi|1087422459|emb|SDL43416.1|9.214e-1748.48Acetyl esterase/lipase [Catalinimonas alkaloidigen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9468rna9468Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications