rna9467, rna9467 (mRNA) Nannochloropsis gaditana

Overview
Namerna9467
Unique Namerna9467
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length680
Alignment locationKK037253.1:357218..357984 -

Link to JBrowse

Properties
Property NameValue
Productcholine dehydrogenase
Orig transcript idgnl|cribi|Naga_101331g1.1324.mrna
Orig protein idgnl|cribi|Naga_101331g1.1324
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:357218..357984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101331g1gene9188Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9467rna9467-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21237.1cds9436Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9467 ID=rna9467|Name=rna9467|organism=Nannochloropsis gaditana|type=mRNA|length=680bp
GGAGGGAGGGCAGGGCCCCAGGCTAGGCGCTGGGTTGGAAGGCGCACGGC
CCTCTCTTTTTCTCCCCGGGAAGTTGATGCACGCTCTCTGATCCTTTCCT
TGCACCCTCTTCCCCTTTCTCCTCCCCTCCCTCTCCCTAGGAAGCCTCGT
CTTCTTCTCTGCCTTCCTCACGGGCCTGGTCCCTCTCCTTGTCTTTTGCT
TCCCAACCCCCTCCAGCTCCGCCCGCATGGCCCATCTCCCCGACGTGGTC
GCGCTTGTCCTGGCTGTGTTCCTCCTTTTCCTCCTGGGCCTGGTGAAGGC
CCGCTTTGTCCAACAGCCTTCCCACTGGACTGTGGCTCTTCTCTTAGGGA
TAGGCGTGGCGGTGGGGGGCGTGAGTTGGGGGGTGGGGTCCGGGCTGGGG
CGCGCGTTGCATTAAGAGGGATCCGTTGGATCTGTTGAATGAGTGCTATT
GTGTATGGCAAGGCATGTGTACGGTCGGAAGGGAAAATTCACCTAGTGGG
AGTGACGGAGGGGATAGAAAGGAGGGAATATGCTGGGAACGCACTCAAAC
GGGCGAATTTCCTCAATCCTGCGCTTCTTGGGATGTTCGGTTTTGTATGG
CACGAATGCTGGAGAGGATTTCAGCGGGGGGTGTACAGTGGCACGACGAA
AGGAATGAAATCAAGGACCTTGCACGAGGA
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protein sequence of rna9467

>rna9467-protein ID=rna9467-protein|Name=rna9467|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKE
KVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGT
ALINAMQYSRGYRKDYQAWEEWWKMEEIEE
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mRNA from alignment at KK037253.1:357218..357984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9467 ID=rna9467|Name=rna9467|organism=Nannochloropsis gaditana|type=mRNA|length=767bp|location=Sequence derived from alignment at KK037253.1:357218..357984- (Nannochloropsis gaditana)
TTGCAGGGCTCTAGCACCTTCTTGTTGTCCCCCCGTGAAAAAGAGGAAGA
TAAATTATGGAAAAGGATCCAAGAAAAGAAATACTTTTTCATTCCCGAGC
GCCCAAGTACATCATTGTCGGTGCTGGACCTGCGGGCTGTGCATTGGCAG
CGGCCCTTGCAAAAGGACAGCAGGGCAAGGTTGTGATGGTGGAGAGAGGT
AAAGAAAAGGTAAGATCTATGTTCGAGAAAATTTTACTTGTGTGAGAGGG
CAAAGTTCACGAGGAGATGAAGGCAATTACAAGGAGGGGAAACCAAGGCA
TGAGGTCTTCCACATGAGCATTCAGGACTCCTATCTCCTCCCTTAGGTGC
ATACACGCTTCGTGACTAAAGTCAACGACTGGGTGAAAGCCTCCCTCCGC
TCTTGGAACGCGGTACAATACCTGAGTGTTCCACATCGCCACCTCGGGAA
CCGGCAGTTTGTTACTCCTCGCGGCCAAGGGAAAGGAGGGACTGGTGGGT
GGTTCGTGTCGCTTTTATAAATGCCTCCTTTCTTCTTCTAGCGTGCCCCC
TTTTATCCCAGCCATGTCTATCAATCGATGATCTTCTCCGCTTCGCATAA
ATGTACGCCCCATGTTCTGTTTCCGCCCTCTCCCACGACCCTGCGGCCCT
CACGCCCCCGCCCCGCTTACCACAGCCTTGATCAACGCCATGCAATACTC
ACGGGGTTACCGGAAGGACTATCAGGCTTGGGAAGAATGGTGGAAGATGG
AGGAAATTGAGGAGTGA
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Coding sequence (CDS) from alignment at KK037253.1:357218..357984-

>rna9467 ID=rna9467|Name=rna9467|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at KK037253.1:357218..357984- (Nannochloropsis gaditana)
CCTTGATCAACGCCATGCAATACTCACGGGGTTACCGGAAGGACTATCAG
GCTTGGGAAGAATGGTGGAAGATGGAGGAAATTGAGGAGTGAGTGCATAC
ACGCTTCGTGACTAAAGTCAACGACTGGGTGAAAGCCTCCCTCCGCTCTT
GGAACGCGGTACAATACCTGAGTGTTCCACATCGCCACCTCGGGAACCGG
CAGTTTGTTACTCCTCGCGGCCAAGGGAAAGGAGGGACTGATGGAAAAGG
ATCCAAGAAAAGAAATACTTTTTCATTCCCGAGCGCCCAAGTACATCATT
GTCGGTGCTGGACCTGCGGGCTGTGCATTGGCAGCGGCCCTTGCAAAAGG
ACAGCAGGGCAAGGTTGTGATGGTGGAGAGAGGTAAAGAAAAGCCTTGAT
CAACGCCATGCAATACTCACGGGGTTACCGGAAGGACTATCAGGCTTGGG
AAGAATGGTGGAAGATGGAGGAAATTGAGGAGTGAGTGCATACACGCTTC
GTGACTAAAGTCAACGACTGGGTGAAAGCCTCCCTCCGCTCTTGGAACGC
GGTACAATACCTGAGTGTTCCACATCGCCACCTCGGGAACCGGCAGTTTG
TTACTCCTCGCGGCCAAGGGAAAGGAGGGACTGATGGAAAAGGATCCAAG
AAAAGAAATACTTTTTCATTCCCGAGCGCCCAAGTACATCATTGTCGGTG
CTGGACCTGCGGGCTGTGCATTGGCAGCGGCCCTTGCAAAAGGACAGCAG
GGCAAGGTTGTGATGGTGGAGAGAGGTAAAGAAAAGCCTTGATCAACGCC
ATGCAATACTCACGGGGTTACCGGAAGGACTATCAGGCTTGGGAAGAATG
GTGGAAGATGGAGGAAATTGAGGAGTGAGTGCATACACGCTTCGTGACTA
AAGTCAACGACTGGGTGAAAGCCTCCCTCCGCTCTTGGAACGCGGTACAA
TACCTGAGTGTTCCACATCGCCACCTCGGGAACCGGCAGTTTGTTACTCC
TCGCGGCCAAGGGAAAGGAGGGACTGATGGAAAAGGATCCAAGAAAAGAA
ATACTTTTTCATTCCCGAGCGCCCAAGTACATCATTGTCGGTGCTGGACC
TGCGGGCTGTGCATTGGCAGCGGCCCTTGCAAAAGGACAGCAGGGCAAGG
TTGTGATGGTGGAGAGAGGTAAAGAAAAG
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Synonyms
Publications