EWM21237.1, cds9436 (CDS) Nannochloropsis gaditana

Overview
NameEWM21237.1
Unique Namecds9436
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:357776..357928 -
Alignment locationKK037253.1:357491..357638 -
Alignment locationKK037253.1:357218..357309 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21237.1
Productcholine dehydrogenase
Orig transcript idgnl|cribi|Naga_101331g1.1324.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:357776..357928 -
KK037253.1supercontigKK037253.1:357491..357638 -
KK037253.1supercontigKK037253.1:357218..357309 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0050660flavin adenine dinucleotide binding
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
Homology
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|585101357|gb|EWM21237.1| (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 271.166 bits (692), Expect = 3.309e-92
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEWWKMEEIEE 130
            MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEWWKMEEIEE
Sbjct:    1 MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEWWKMEEIEE 130          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|551589635|ref|WP_022985223.1| (choline dehydrogenase [Alcanivorax sp. P2S70] >gi|550664665|gb|ERP90483.1| choline dehydrogenase [Alcanivorax sp. P2S70])

HSP 1 Score: 85.1149 bits (209), Expect = 8.702e-17
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEE 121
            YIIVGAG AGC LA  L++  Q +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W E
Sbjct:    5 YIIVGAGSAGCVLANRLSENPQNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWAE 107          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|1012713679|ref|WP_062817010.1| (MULTISPECIES: GMC family oxidoreductase [Alcanivorax] >gi|1024429364|gb|KZX71522.1| GMC family oxidoreductase [Alcanivorax sp. HI0003] >gi|1024435441|gb|KZX75989.1| GMC family oxidoreductase [Alcanivorax sp. HI0011] >gi|1024442035|gb|KZX80852.1| GMC family oxidoreductase [Alcanivorax sp. HI0013] >gi|1024482701|gb|KZY11769.1| GMC family oxidoreductase [Alcanivorax sp. HI0033] >gi|1024485276|gb|KZY13646.1| GMC family oxidoreductase [Alcanivorax sp. HI0035] >gi|1024495703|gb|KZY20279.1| GMC family oxidoreductase [Alcanivorax sp. HI0035] >gi|1090725916|emb|SEF42096.1| Choline dehydrogenase [Alcanivorax sp. DSM 26293])

HSP 1 Score: 83.5741 bits (205), Expect = 3.632e-16
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW----EEWWKMEEI 128
            YIIVGAG AGC LA  L++    +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W     E W  +++
Sbjct:    5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWASLGNEGWSFDDV 118          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|737250969|ref|WP_035235017.1| (GMC family oxidoreductase [Alcanivorax nanhaiticus] >gi|686990352|gb|KGD63196.1| alcohol/choline dehydrogenase [Alcanivorax nanhaiticus])

HSP 1 Score: 82.8037 bits (203), Expect = 5.580e-16
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEE 121
            YIIVGAG AGC LA  L++    +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W E
Sbjct:    5 YIIVGAGSAGCVLANRLSENPDNRVCLLEAGPADNSLFIRIPAGIILMMRSNSRNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWAE 107          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|494258114|ref|WP_007151117.1| (choline dehydrogenase [Alcanivorax sp. DG881] >gi|196195753|gb|EDX90712.1| GMC oxidoreductase family [Alcanivorax sp. DG881])

HSP 1 Score: 82.0333 bits (201), Expect = 1.048e-15
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
            YIIVGAG AGC LA  L++    +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W
Sbjct:    5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQLYIPRGKTLGGSSAVNAMCYTRGHQSDYDHW 105          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|489371580|ref|WP_003278365.1| (GMC family oxidoreductase [Ralstonia solanacearum])

HSP 1 Score: 82.0333 bits (201), Expect = 1.067e-15
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
            Y+IVGAG AGCALA+ L K     V ++E G    H          V    R+     YL+ P   LG RQ   PRG+G GG++ +NAM Y+RG+R DY  W
Sbjct:   14 YVIVGAGSAGCALASRLTKDPDVSVALLEAGPHDHHFSVWVPAGCAVSLPFRNARNYAYLTTPQPGLGGRQGYQPRGRGLGGSSSLNAMIYTRGHRHDYDHW 115          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|1172530329|ref|WP_080895118.1| (GMC family oxidoreductase, partial [Ralstonia solanacearum])

HSP 1 Score: 82.0333 bits (201), Expect = 1.073e-15
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
            Y+IVGAG AGCALA+ L K     V ++E G    H          V    R+     YL+ P   LG RQ   PRG+G GG++ +NAM Y+RG+R DY  W
Sbjct:   14 YVIVGAGSAGCALASRLTKDPDVSVALLEAGPHDHHFSVWVPAGCAVSLPFRNARNYAYLTTPQPGLGGRQGYQPRGRGLGGSSSLNAMIYTRGHRHDYDHW 115          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|737263804|ref|WP_035247744.1| (GMC family oxidoreductase [Alcanivorax jadensis] >gi|686988231|gb|KGD61087.1| alcohol/choline dehydrogenase [Alcanivorax jadensis T9])

HSP 1 Score: 82.0333 bits (201), Expect = 1.133e-15
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW----EEWWKMEEI 128
            YIIVGAG AGC LA  L++    +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W     + W  +++
Sbjct:    5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWASLGNDGWSFDDV 118          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|1024867884|ref|WP_063519807.1| (MULTISPECIES: GMC family oxidoreductase [Alcanivorax] >gi|1024518699|gb|KZY36574.1| GMC family oxidoreductase [Alcanivorax sp. HI0044] >gi|1024654476|gb|KZZ26844.1| GMC family oxidoreductase [Alcanivorax sp. HI0083])

HSP 1 Score: 82.0333 bits (201), Expect = 1.213e-15
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query:   18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
            YIIVGAG AGC LA  L++    +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W
Sbjct:    5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHQSDYDHW 105          
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|496210209|ref|WP_008927596.1| (choline dehydrogenase [Alcanivorax hongdengensis] >gi|407767174|gb|EKF75612.1| alcohol/choline dehydrogenase [Alcanivorax hongdengensis A-11-3])

HSP 1 Score: 81.6481 bits (200), Expect = 1.445e-15
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 0
Query:   17 KYIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEW----WKMEEI 128
             YIIVGAG AGC LA  L++    +V ++E G     +  R    +   ++++ R+W   +Y +VP + L NRQ   PRG+  GG++ +NAM Y+RG++ DY  W E     W  +++
Sbjct:    4 DYIIVGAGSAGCVLANRLSENPNTRVCLIEAGPADNSLFVRLPLGIILLMRSNARNW---RYYTVPQKALNNRQVYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWAELGNEGWSYQDV 118          
The following BLAST results are available for this feature:
BLAST of EWM21237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101357|gb|EWM21237.1|3.309e-92100.00choline dehydrogenase [Nannochloropsis gaditana][more]
gi|551589635|ref|WP_022985223.1|8.702e-1739.62choline dehydrogenase [Alcanivorax sp. P2S70] >gi|... [more]
gi|1012713679|ref|WP_062817010.1|3.632e-1635.90MULTISPECIES: GMC family oxidoreductase [Alcanivor... [more]
gi|737250969|ref|WP_035235017.1|5.580e-1638.68GMC family oxidoreductase [Alcanivorax nanhaiticus... [more]
gi|494258114|ref|WP_007151117.1|1.048e-1538.46choline dehydrogenase [Alcanivorax sp. DG881] >gi|... [more]
gi|489371580|ref|WP_003278365.1|1.067e-1542.16GMC family oxidoreductase [Ralstonia solanacearum][more]
gi|1172530329|ref|WP_080895118.1|1.073e-1542.16GMC family oxidoreductase, partial [Ralstonia sola... [more]
gi|737263804|ref|WP_035247744.1|1.133e-1535.04GMC family oxidoreductase [Alcanivorax jadensis] >... [more]
gi|1024867884|ref|WP_063519807.1|1.213e-1538.46MULTISPECIES: GMC family oxidoreductase [Alcanivor... [more]
gi|496210209|ref|WP_008927596.1|1.445e-1535.59choline dehydrogenase [Alcanivorax hongdengensis] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9467rna9467Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications