EWM21237.1, cds9436 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|585101357|gb|EWM21237.1| (choline dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 271.166 bits (692), Expect = 3.309e-92 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEWWKMEEIEE 130
MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEWWKMEEIEE
Sbjct: 1 MEKDPRKEILFHSRAPKYIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEWWKMEEIEE 130
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|551589635|ref|WP_022985223.1| (choline dehydrogenase [Alcanivorax sp. P2S70] >gi|550664665|gb|ERP90483.1| choline dehydrogenase [Alcanivorax sp. P2S70]) HSP 1 Score: 85.1149 bits (209), Expect = 8.702e-17 Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEE 121
YIIVGAG AGC LA L++ Q +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W E
Sbjct: 5 YIIVGAGSAGCVLANRLSENPQNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWAE 107
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|1012713679|ref|WP_062817010.1| (MULTISPECIES: GMC family oxidoreductase [Alcanivorax] >gi|1024429364|gb|KZX71522.1| GMC family oxidoreductase [Alcanivorax sp. HI0003] >gi|1024435441|gb|KZX75989.1| GMC family oxidoreductase [Alcanivorax sp. HI0011] >gi|1024442035|gb|KZX80852.1| GMC family oxidoreductase [Alcanivorax sp. HI0013] >gi|1024482701|gb|KZY11769.1| GMC family oxidoreductase [Alcanivorax sp. HI0033] >gi|1024485276|gb|KZY13646.1| GMC family oxidoreductase [Alcanivorax sp. HI0035] >gi|1024495703|gb|KZY20279.1| GMC family oxidoreductase [Alcanivorax sp. HI0035] >gi|1090725916|emb|SEF42096.1| Choline dehydrogenase [Alcanivorax sp. DSM 26293]) HSP 1 Score: 83.5741 bits (205), Expect = 3.632e-16 Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW----EEWWKMEEI 128
YIIVGAG AGC LA L++ +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W E W +++
Sbjct: 5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWASLGNEGWSFDDV 118
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|737250969|ref|WP_035235017.1| (GMC family oxidoreductase [Alcanivorax nanhaiticus] >gi|686990352|gb|KGD63196.1| alcohol/choline dehydrogenase [Alcanivorax nanhaiticus]) HSP 1 Score: 82.8037 bits (203), Expect = 5.580e-16 Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEE 121
YIIVGAG AGC LA L++ +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W E
Sbjct: 5 YIIVGAGSAGCVLANRLSENPDNRVCLLEAGPADNSLFIRIPAGIILMMRSNSRNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWAE 107
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|494258114|ref|WP_007151117.1| (choline dehydrogenase [Alcanivorax sp. DG881] >gi|196195753|gb|EDX90712.1| GMC oxidoreductase family [Alcanivorax sp. DG881]) HSP 1 Score: 82.0333 bits (201), Expect = 1.048e-15 Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
YIIVGAG AGC LA L++ +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W
Sbjct: 5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQLYIPRGKTLGGSSAVNAMCYTRGHQSDYDHW 105
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|489371580|ref|WP_003278365.1| (GMC family oxidoreductase [Ralstonia solanacearum]) HSP 1 Score: 82.0333 bits (201), Expect = 1.067e-15 Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
Y+IVGAG AGCALA+ L K V ++E G H V R+ YL+ P LG RQ PRG+G GG++ +NAM Y+RG+R DY W
Sbjct: 14 YVIVGAGSAGCALASRLTKDPDVSVALLEAGPHDHHFSVWVPAGCAVSLPFRNARNYAYLTTPQPGLGGRQGYQPRGRGLGGSSSLNAMIYTRGHRHDYDHW 115
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|1172530329|ref|WP_080895118.1| (GMC family oxidoreductase, partial [Ralstonia solanacearum]) HSP 1 Score: 82.0333 bits (201), Expect = 1.073e-15 Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERGKEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
Y+IVGAG AGCALA+ L K V ++E G H V R+ YL+ P LG RQ PRG+G GG++ +NAM Y+RG+R DY W
Sbjct: 14 YVIVGAGSAGCALASRLTKDPDVSVALLEAGPHDHHFSVWVPAGCAVSLPFRNARNYAYLTTPQPGLGGRQGYQPRGRGLGGSSSLNAMIYTRGHRHDYDHW 115
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|737263804|ref|WP_035247744.1| (GMC family oxidoreductase [Alcanivorax jadensis] >gi|686988231|gb|KGD61087.1| alcohol/choline dehydrogenase [Alcanivorax jadensis T9]) HSP 1 Score: 82.0333 bits (201), Expect = 1.133e-15 Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW----EEWWKMEEI 128
YIIVGAG AGC LA L++ +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W + W +++
Sbjct: 5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWASLGNDGWSFDDV 118
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|1024867884|ref|WP_063519807.1| (MULTISPECIES: GMC family oxidoreductase [Alcanivorax] >gi|1024518699|gb|KZY36574.1| GMC family oxidoreductase [Alcanivorax sp. HI0044] >gi|1024654476|gb|KZZ26844.1| GMC family oxidoreductase [Alcanivorax sp. HI0083]) HSP 1 Score: 82.0333 bits (201), Expect = 1.213e-15 Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query: 18 YIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAW 119
YIIVGAG AGC LA L++ +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W
Sbjct: 5 YIIVGAGSAGCVLANRLSENPNNRVCLLEAGPADNSLFIRIPAGIILMMRSNARNW---RYYTVPQKALNNRQIYIPRGKTLGGSSAVNAMCYTRGHQSDYDHW 105
BLAST of EWM21237.1 vs. NCBI_GenBank
Match: gi|496210209|ref|WP_008927596.1| (choline dehydrogenase [Alcanivorax hongdengensis] >gi|407767174|gb|EKF75612.1| alcohol/choline dehydrogenase [Alcanivorax hongdengensis A-11-3]) HSP 1 Score: 81.6481 bits (200), Expect = 1.445e-15 Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 0
Query: 17 KYIIVGAGPAGCALAAALAKGQQGKVVMVERG--KEKVHTRFVTKVNDWVKASLRSWNAVQYLSVPHRHLGNRQFVTPRGQGKGGTALINAMQYSRGYRKDYQAWEEW----WKMEEI 128
YIIVGAG AGC LA L++ +V ++E G + R + ++++ R+W +Y +VP + L NRQ PRG+ GG++ +NAM Y+RG++ DY W E W +++
Sbjct: 4 DYIIVGAGSAGCVLANRLSENPNTRVCLIEAGPADNSLFVRLPLGIILLMRSNARNW---RYYTVPQKALNNRQVYIPRGKTLGGSSAVNAMCYTRGHKWDYDHWAELGNEGWSYQDV 118 The following BLAST results are available for this feature:
BLAST of EWM21237.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|