rna9466, rna9466 (mRNA) Nannochloropsis gaditana

Overview
Namerna9466
Unique Namerna9466
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length497
Alignment locationKK037253.1:354618..355297 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101775g1.9842.mrna
Orig protein idgnl|cribi|Naga_101775g1.9842
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:354618..355297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101775g1gene9187Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9466rna9466-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21238.1cds9435Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9466 ID=rna9466|Name=rna9466|organism=Nannochloropsis gaditana|type=mRNA|length=497bp
CCCAAGTCCTCACAGGGTCTCAGTATACAAGAAAACGGGCACTGAGGGCC
AGGTTGCTGTAATGTCTTCCGAAATTAATGACGGGGAGCCCGCCAAGGAT
GGTCTATCGGAAAGGGAGGGGCAGGAGGGCAAGCTGGAAAGAGGGGGGGA
CGGAGGGGGGGCTGCCGAGACGCAAACAAACTCACCACCACAGCCAGCAA
ACATGAAAACTAAGGAGGCAGAAATGCTTATTAAGCAGGCATTCGCCACC
CAGAACGCGGACCTGTCCAGGGAGATGCACAAGGCCAGAGCGTCCATAAG
TTCACCGTCGAGTGCGGTGGCCGGAGCTCCCCTCCCTCTCAACGGCATGG
GGCTCTCCACCTCGGGCTTTGGAGGCTCGATGCCCGCCGAGGGGGGACAC
ATATGGCGAGAGACCGACATTTCTGCCTACCTGATCACGGGGGCGGTGGG
AGGTGCGGACGAGGGGATGCAGAGGGAGGGAGGGAGGGAGGGAGGGA
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protein sequence of rna9466

>rna9466-protein ID=rna9466-protein|Name=rna9466|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
GGRAGPQARRWVGRRTALSFSPREVDARSLILSLHPLPLSPPLPLPRKPR
LLLCLPHGPGPSPCLLLPNPLQLRPHGPSPRRGRACPGCVPPFPPGPGEG
PLCPTAFPLDCGSSLRDRRGGGGRELGGGVRAGARVALRGIRWIC
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mRNA from alignment at KK037253.1:354618..355297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9466 ID=rna9466|Name=rna9466|organism=Nannochloropsis gaditana|type=mRNA|length=680bp|location=Sequence derived from alignment at KK037253.1:354618..355297+ (Nannochloropsis gaditana)
ggagggagggcagggcccCAGGCTAGGCGCTGGGTTGGAAGGCGCACggc
cctctctttttctccccggGAAGTTGATGCACGCTCTCTGATCCTTTCCT
tgcaccctcttcccctttctcctcccctccctctccctaggaagcctcgt
cttcttctctgccttcctcACGGGCctggtccctctccttgtctttTGCT
TCCCAaccccctccagctccgccCGCATGGCCCATCTCCCCGACGTGGTC
GCGCTTGTCCTGGCTgtgttcctccttttcctcctgggcctggtGAAGGC
CCGCTTTGTCCAACAGCCTTCCCACTGGACTGTGGCTCTTCTCTTAGGGA
TAggcgtggcggtggggggcGTGAGTTGGGGGGTGGGGTCCGGGCTGGGG
CGCGCGTTGCATTAAGAGGGATCCGTTGGATCTGTTGAATGAGTGCTATT
GTGTATGGCAAGGCATGTGTACGGTCGGAAGGGAAAATTCACCTAGTGGG
AGTGACGGAGGGGatagaaaggagggaataTGCTGGGAACGCACTCAAAC
GGGCGAATTTCCTCAATCCTGCGCTTCTTGGGATGTTCGGTTTTGTATGG
CACGAATGCTGGAGAGGATTTCAGCGGGGGGTGTACAGTGGCACGACGAA
AGGAATGAAATCAAGGACCTTGCACGAGGA
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Coding sequence (CDS) from alignment at KK037253.1:354618..355297+

>rna9466 ID=rna9466|Name=rna9466|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at KK037253.1:354618..355297+ (Nannochloropsis gaditana)
ggagggagggcagggcccCAGGCTAGGCGCTGGGTTGGAAGGCGCACggc
cctctctttttctccccggGAAGTTGATGCACGCTCTCTGATCCTTTCCT
tgcaccctcttcccctttctcctcccctccctctccctaggaagcctcgt
cttcttctctgccttcctcACGGGCctggtccctctccttgtctttTGCT
TCCCAaccccctccagctccgccCGCATGGCCCATCTCCCCGACGTGGTC
GCGCTTGTCCTGGCTgtgttcctccttttcctcctgggcctggtGAAGGC
CCGCTTTGTCCAACAGCCTTCCCACTGGACTGTGGCTCTTCTCTTAGGGA
TAggcgtggcggtggggggcGTGAGTTGGGGGGTGGGGTCCGGGCTGGGG
CGCGCGTTGCATTAAGAGGGATCCGTTGGATCTGTTGA
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Synonyms
Publications