rna9464, rna9464 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9464
Unique Name	rna9464
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1066
Alignment location	KK037253.1:352797..353381 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101615g2.1319.mrna
Orig protein id	gnl\|cribi\|Naga_101615g2.1319
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:352797..353381 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101615g2	gene9185	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9464	rna9464-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21240.1	cds9433	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:352797..353381-
coding sequence from alignment at KK037253.1:352797..353381-

mRNA sequence

>rna9464 ID=rna9464|Name=rna9464|organism=Nannochloropsis gaditana|type=mRNA|length=1066bp
CTCCCTCCTTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCTCCAGAGAGC
GGTGCCCTCGGCTCATCCTTTGGGGGCTGTCGCTGGAATCCTGCCAGGCC
CCGAGGCACCTCGAGGCGATCCGATCCCTCCGGTCCATGCTGGGACGGGA
CCCGGTCGTCATCCTGCCCATGGAGGGTGGGGAGGGAGGGAGGGAGGGGA
GGGAGGGGAGGGAGGGCTCGATTCTAGAAAAATTCCTTCTTTTTCCCTTC
TTCCTTCTCCCTCCCCTTTTTCCTCCTCCAAAGACATCCGTAGTCTCACC
CCCCTCCCGCCCTCCCTCCCGCCCTTTCCCCCTCCCTCAGGGCAAGAGGA
GCTGGCCAAGGCCGTGACCTCGAGCCAGTCGCTGGCCTGGGAGAGCCTGA
TCACCCTCTTAACCGTCGATATCCCCATCATCGCCGACGTGCCGGAGGGC
ATCCAGCCCGACCTGGGGGAGGAAGGGGAGGACGGGGGGAAGGACGGGGA
GGAGTACGATCCCTTGACGGCGGAGGGGGATGGGGTGGAAGACGACGTGG
TGGAGAGGGGATTGGACAGCGGGGAGGTGGTCACCTTCGATTTTGAAGAG
GACGAGGAGGAGGGAGGGGAGGAGGGAGGGGAGGAGGGAGGGGAGGAGGA
AGCGGTCAAGATGGTGGAAAGGCGGCAGGGCCCCAAGTCAAAAAAAGCGG
TGAGAAAACCCGCAAAGAAGCAGGCAAAGGGGAAGGGAGGGAGGGAGGGG
GGGGAGGAGGGGGGGCAGGCGGGGGCCTTTGGGGTGGGATTGGACCGGAA
AGGGTGGTGAGGTAGGATGATGCATAACGCCCCAGAACGCCTCCACAACC
CTCGACGAAAGGATGCAACAGCATGCGAGCTCGTCGCAAAAAAGGAGAGA
CAGGATTGTGTACGTATTGCTTTCTCGTTCCGTTGGCTCACCAGGAGGGG
GGGGGCGCATTGCAATGCCAGGGTGGAGGGGAGAGGTCAACTCAAGGCGG
GAGAGATGCGTCATGTGCACCTTCCCTGCATTTGCGTCCTCGCTTTACCA
CCCCATTAAACACTGC

protein sequence of rna9464

>rna9464-protein ID=rna9464-protein|Name=rna9464|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MSTGTICCFLPLYYFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERR
HSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGAL
RRLGREGAFQVRAAYEINLVANQVYAAQGRRPHDLRDDKFMVA

mRNA from alignment at KK037253.1:352797..353381-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9464 ID=rna9464|Name=rna9464|organism=Nannochloropsis gaditana|type=mRNA|length=585bp|location=Sequence derived from alignment at KK037253.1:352797..353381- (Nannochloropsis gaditana)
ATGTCCACAGGGACAATCTGCTGCTTTTTGCCCTTGTATTACTTTCTCTT
GCACTTCGCCAGTCGTTCGAGTGCCTTTGTTCCCCCTGAGCGCGTGTGGA
GTTGTAGCACTTTTCCGCCACCCCGGCGCGTGCGGGGTCTGGAACGACGG
CATTCGACACTACCAAAAGTCAATAGACAGAGGGCGTCAGACATGGGCGA
TGTGACCGAGGGACCTTGGAAGGAAAATGATTCCACACATGGGGCCGTGG
AATTTTACAGTGGCATTGGTGGCTGGAGTGAGGCTTTAGAAGGAGCATTG
AGAAGGCTGGGGAGGGAGGGGGCTTTCCAGGTACGTCGACTTTGTGACCC
AATTTTTTGCATCCCGAGGACAACTTTTTCTTTCTATATCTGTATCAAGG
TATTATATGGTATAAATACATGCGATACTATGCTGAGGGCTTTCAATTCA
GTGCCTTTCGTGTCCTTCGCCCATGCCCCATAGGTGAGGGCCGCGTATGA
GATCAATCTGGTCGCCAACCAGGTCTATGCTGCTCAAGGTAGGAGGCCGC
ATGATTTGCGAGACGACAAGTTCATGGTAGCGTAG

Coding sequence (CDS) from alignment at KK037253.1:352797..353381-

>rna9464 ID=rna9464|Name=rna9464|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at KK037253.1:352797..353381- (Nannochloropsis gaditana)
GTGAGGGCCGCGTATGAGATCAATCTGGTCGCCAACCAGGTCTATGCTGC
TCAAGGTAGGAGGCCGCATGATTTGCGAGACGACAAGTTCATGGTAGCGT
AGATGTCCACAGGGACAATCTGCTGCTTTTTGCCCTTGTATTACTTTCTC
TTGCACTTCGCCAGTCGTTCGAGTGCCTTTGTTCCCCCTGAGCGCGTGTG
GAGTTGTAGCACTTTTCCGCCACCCCGGCGCGTGCGGGGTCTGGAACGAC
GGCATTCGACACTACCAAAAGTCAATAGACAGAGGGCGTCAGACATGGGC
GATGTGACCGAGGGACCTTGGAAGGAAAATGATTCCACACATGGGGCCGT
GGAATTTTACAGTGGCATTGGTGGCTGGAGTGAGGCTTTAGAAGGAGCAT
TGAGAAGGCTGGGGAGGGAGGGGGCTTTCCAGGTGAGGGCCGCGTATGAG
ATCAATCTGGTCGCCAACCAGGTCTATGCTGCTCAAGGTAGGAGGCCGCA
TGATTTGCGAGACGACAAGTTCATGGTAGCGTAGATGTCCACAGGGACAA
TCTGCTGCTTTTTGCCCTTGTATTACTTTCTCTTGCACTTCGCCAGTCGT
TCGAGTGCCTTTGTTCCCCCTGAGCGCGTGTGGAGTTGTAGCACTTTTCC
GCCACCCCGGCGCGTGCGGGGTCTGGAACGACGGCATTCGACACTACCAA
AAGTCAATAGACAGAGGGCGTCAGACATGGGCGATGTGACCGAGGGACCT
TGGAAGGAAAATGATTCCACACATGGGGCCGTGGAATTTTACAGTGGCAT
TGGTGGCTGGAGTGAGGCTTTAGAAGGAGCATTGAGAAGGCTGGGGAGGG
AGGGGGCTTTCCAG

Synonyms

Publications