EWM21240.1, cds9433 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21240.1
Unique Name	cds9433
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037253.1:353052..353381 -
Alignment location	KK037253.1:352797..352898 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM21240.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101615g2.1319.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:353052..353381 -
KK037253.1	supercontig	KK037253.1:352797..352898 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR029063	SAM-dependent_MTases

Homology

[Close]

BLAST of EWM21240.1 vs. NCBI_GenBank
Match: gi|585101364|gb|EWM21240.1| (hypothetical protein Naga_101615g2 [Nannochloropsis gaditana])

HSP 1 Score: 299.286 bits (765), Expect = 5.955e-103
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query:    1 MSTGTICCFLPLYYFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERRHSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGALRRLGREGAFQVRAAYEINLVANQVYAAQGRRPHDLRDDKFMVA 143
            MSTGTICCFLPLYYFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERRHSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGALRRLGREGAFQVRAAYEINLVANQVYAAQGRRPHDLRDDKFMVA
Sbjct:    1 MSTGTICCFLPLYYFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERRHSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGALRRLGREGAFQVRAAYEINLVANQVYAAQGRRPHDLRDDKFMVA 143

[Close]

BLAST of EWM21240.1 vs. NCBI_GenBank
Match: gi|553195680|ref|XP_005856182.1| (hypothetical protein NGA_0319000, partial [Nannochloropsis gaditana CCMP526] >gi|422292860|gb|EKU20162.1| hypothetical protein NGA_0319000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 267.7 bits (683), Expect = 1.276e-90
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0

Query:   14 YFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERRHSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGALRRLGREGAFQVRAAYEINLVANQVYAAQGRRPHDLRDDKFMVA 143
            YFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERRHSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGALRRLGREGAFQVRAAYEINLVANQVYAAQGRRPHD RDDKFMVA
Sbjct:    1 YFLLHFASRSSAFVPPERVWSCSTFPPPRRVRGLERRHSTLPKVNRQRASDMGDVTEGPWKENDSTHGAVEFYSGIGGWSEALEGALRRLGREGAFQVRAAYEINLVANQVYAAQGRRPHDSRDDKFMVA 130

The following BLAST results are available for this feature:

BLAST of EWM21240.1 vs. NCBI_GenBank

BLAST of EWM21240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585101364\|gb\|EWM21240.1\|	5.955e-103	100.00	hypothetical protein Naga_101615g2 [Nannochloropsi...	[more]
gi\|553195680\|ref\|XP_005856182.1\|	1.276e-90	99.23	hypothetical protein NGA_0319000, partial [Nannoch...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9464	rna9464	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications