rna9459, rna9459 (mRNA) Nannochloropsis gaditana

Overview
Namerna9459
Unique Namerna9459
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length618
Alignment locationKK037253.1:341893..342516 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100910g2.5856.mrna
Orig protein idgnl|cribi|Naga_100910g2.5856
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:341893..342516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100910g2gene9180Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9459rna9459-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21245.1cds9428Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9459 ID=rna9459|Name=rna9459|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
AACAGAAAAAAGGGGAGCCTTTTCGGCGTCGCACACGCAGGGATGGGCGC
TCCGTCGACACGGCGAGTGTCGAAAAGTGGCCAACGTGACGGGCATGGCG
TGAACCGCGCCTCCTTTCACCGCTCGCCACTCATTATGGCTCTCCTCCTC
CCTCTCCTTCCTCCGCCCGTTTGGGGCTGGGGAGGGACAAGAAGCCCTTT
CCCATGCTCGGCTTTCATGCCCGGGGGTGCTTCTGGCACCAGCAGTCATG
CTAGCACGGAAGGAAGGAGACGGCTGGGCTGGGAGCGAACCACGGGACTG
AAGGCCACTACCACCCCTTTGACGAGCAGCACGACCCCTGTCAAGGCGAT
CCCTGCCTCGCCTTCCCCCTCAACCTCCTCCCCCCCCTACTCCACCGTCG
ACCCTCCCTCCTCCTCCTCGTCTCCAGGACCGTCCCCGCGCCCAAGCGTC
ATTGCCAACAAGCTTCAGAAACCCCAAAACGCGCCTACGGTGTGGGTGGA
ATTCGGGGCCCTTGCGGCTTCCTTGCCTCCGGAGAAGATCATCAACCTGG
GTCAAGGCTTTCCCAACTGGGTAAGGAGGGAGGGAGGGAGGGAGGGAGTG
GGAGGGACAAGCGAAGGG
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protein sequence of rna9459

>rna9459-protein ID=rna9459-protein|Name=rna9459|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MPFTMAKPLSATPLSSSFDPPFLRKRILTPNDPPVRSKLFPEKTGRGGGR
EGGQGRGRRSPLPWFLIGLEGRSPTHTALLGSRKSMKEDEVNEGTTHPLV
AVDINPNRSCRAPRHVKPWPGAEAESPLPAGCDAFCSPPFTHETVSGIGG
RGEGACSPKDILVPCAAWLCP
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mRNA from alignment at KK037253.1:341893..342516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9459 ID=rna9459|Name=rna9459|organism=Nannochloropsis gaditana|type=mRNA|length=624bp|location=Sequence derived from alignment at KK037253.1:341893..342516+ (Nannochloropsis gaditana)
ATGCCATTTACGATGGCAAAACCCCTGTCAGCCACCCCACTATCTTCGTC
CTTtgaccctccttttcttcgcAAAAGAATCCTCACTCCCAATGATCCCC
CTGTGCGAAGCAAGTTGTTTCCGGAAAAGacaggcagggggggagggagg
gagggagggcaagggagagggcggagatctcccctcccttggttCTTGAT
TGGATTGGAAGGACGATCGCCCACCCACACAGCCTTGTTAGGAAGTCGAA
AAAgcatgaaggaggatgaggtgaATGAAGGAGTTAgcgcgaggaagaaa
gagcggagatgaaaggaaggggaaggcgcgagcccctggccgtggatgtc
ccggccttcctcccttccaccctgcTTCCCCACGTGAGAGACCACACACC
CCCTTGTGGCGGTGGACATTAACCCTAACAGATCTTGTCGGGCCCCGAGG
CACGTGAAGCCATGGCCGGGCGCCGAGGCCGAGAGCCCTCTTCCAGCGGG
GTGCGACGCATtctgctcccctccgttTACCCACGAGACCGTCTCCGGGa
taggggggcggggggagggtgcttGCTCCCCAAAGGATATTCTCGTCCCA
TGTGCTGCCTGGTTGTGTCCTTGA
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Coding sequence (CDS) from alignment at KK037253.1:341893..342516+

>rna9459 ID=rna9459|Name=rna9459|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at KK037253.1:341893..342516+ (Nannochloropsis gaditana)
ATGCCATTTACGATGGCAAAACCCCTGTCAGCCACCCCACTATCTTCGTC
CTTtgaccctccttttcttcgcAAAAGAATCCTCACTCCCAATGATCCCC
CTGTGCGAAGCAAGTTGTTTCCGGAAAAGacaggcagggggggagggagg
gagggagggcaagggagagggcggagatctcccctcccttggttCTTGAT
TGGATTGGAAGGACGATCGCCCACCCACACAGCCTTGTTAGGAAGTCGAA
AAAgcatgaaggaggatgaggtgaATGAAGGAACCACACACCCCCTTGTG
GCGGTGGACATTAACCCTAACAGATCTTGTCGGGCCCCGAGGCACGTGAA
GCCATGGCCGGGCGCCGAGGCCGAGAGCCCTCTTCCAGCGGGGTGCGACG
CATtctgctcccctccgttTACCCACGAGACCGTCTCCGGGatagggggg
cggggggagggtgcttGCTCCCCAAAGGATATTCTCGTCCCATGTGCTGC
CTGGTTGTGTCCTTGAATGCCATTTACGATGGCAAAACCCCTGTCAGCCA
CCCCACTATCTTCGTCCTTtgaccctccttttcttcgcAAAAGAATCCTC
ACTCCCAATGATCCCCCTGTGCGAAGCAAGTTGTTTCCGGAAAAGacagg
cagggggggagggagggagggagggcaagggagagggcggagatctcccc
tcccttggttCTTGATTGGATTGGAAGGACGATCGCCCACCCACACAGCC
TTGTTAGGAAGTCGAAAAAgcatgaaggaggatgaggtgaATGAAGGAAC
CACACACCCCCTTGTGGCGGTGGACATTAACCCTAACAGATCTTGTCGGG
CCCCGAGGCACGTGAAGCCATGGCCGGGCGCCGAGGCCGAGAGCCCTCTT
CCAGCGGGGTGCGACGCATtctgctcccctccgttTACCCACGAGACCGT
CTCCGGGataggggggcggggggagggtgcttGCTCCCCAAAGGATATTC
TCGTCCCATGTGCTGCCTGGTTGTGTCCTTGA
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Synonyms
Publications