rna9448, rna9448 (mRNA) Nannochloropsis gaditana

Overview
Namerna9448
Unique Namerna9448
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length811
Alignment locationKK037253.1:318441..319385 -

Link to JBrowse

Properties
Property NameValue
Productslt family
Orig transcript idgnl|cribi|Naga_100908g3.7648.mrna
Orig protein idgnl|cribi|Naga_100908g3.7648
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:318441..319385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100908g3gene9169Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21255.1cds9418Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9448rna9448-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9448 ID=rna9448|Name=rna9448|organism=Nannochloropsis gaditana|type=mRNA|length=811bp
GGAAACAACATCAACTTGAAGAATCCGTGGACGACGCGGCGGATATTCGC
GCATTGTTGCGGGGAGAAATCCAAGGATTAATGAGGGGCTCCGCCGTTGG
GCGGGCCATTGTGCAGGAGCATCCGAAGGAATTGGCCATAATGGAGTCCT
GGGAAATCTTACCGGAGTTACGACCGACACCGCAGGGCGAAGTGTTCTGC
TTTCCTGTGCACGAAAATAGCGGTCTGGCTGAGACCCTGACTAAGTTTCT
CGCTCGAGAACGGGCGACGGGTTCTCTACAAAGCCTGCTGCGCAAGTATG
CTTTGGTTTGAGTGGCGAGACAGGCAGAATAGGCGGAAGGACTAAGGATG
TATTTGCATTTCATTAGAATGGTGAGCGTGGCATTTCTGATTCTCCTCCT
GCAATGTTGTTGAAAATTCTCACCATTTTAAGTCTGAATTCTCCTCTCTT
GAAACAATAGATAAGAAAGCGAGTCGATGAAATGTGTATCAGACATATGC
TGTACGCAAAATGAGGTGATAGTGCGAGCACAAATTGGTAGAGAGTGACA
CTCACATTGATTTGAACACAGTTTCGCATTGAAAGTATCGGAAGCAGTAT
CGACGACCAACTTTCTCCCCACTTCGTATAATTTTTGTGACTTTAACTAT
TCGAAATATACAGCAAATCTCATTGCCGCTTACGTTATGTATTGTTTTCA
AAGCGTAATGTTTCCTGTGCGGTGTCCTTTGAATTAGAGAACAATTTAAA
TGTTATGGTCCGACGTTTCCAGAGTAAACGCGTACGGCAAAAAATTCAAG
AGAATAAATGC
back to top

protein sequence of rna9448

>rna9448-protein ID=rna9448-protein|Name=rna9448|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MATEFRLQDISNIQATTPPRRDIQQRTKRMLKLLAPGKLKIAAFPNFYPI
CYDTSQNMGDRHPSPAGTISEAKLDEYNPDSTQGHFAGLEVELLLRFCKE
YGLEPEIIAVQDFDNLWTYPVKQKADVCIGGITVAPNRTHPGLAWSEAYY
KVSRTVIYHRRRPPRPGMGFPQAMEGVVRGVPGSTGFKDAKRRLC
back to top

mRNA from alignment at KK037253.1:318441..319385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9448 ID=rna9448|Name=rna9448|organism=Nannochloropsis gaditana|type=mRNA|length=945bp|location=Sequence derived from alignment at KK037253.1:318441..319385- (Nannochloropsis gaditana)
TGTATGTGCCCCGCACATGATTGATGCTCTTCTTCAATGATGATTTTTGA
TTCGTCTTATCATACATATGTCTATCTTATAACTCAACATGAAGGCACAC
ACAGAGCTTACAGACGTGGGCTTTGAATAGCTTTTTTGGGTTATCCCTCC
CCTCCCCAAGCCTTGTCCCTCAATAAGCATCACGATATCGGGGTTGATCG
AAGTAACCCGACTTATTATCAGCATATAAATTGTGAGAGAATATGTAAAT
TGTACCTATGTACTGAGCTTTATGAGAAGAAGTAAACATGTCACCTATGA
GAGTATGTTTACTAATATATACTAGCTTTTTTCAACAGATCAGCGCTTAT
AACAGCAAACATGGCAACCGAATTCCGTCTTCAAGACATCTCCAACATTC
AAGCAACGACACCACCAAGGCGGGACATCCAGCAAAGAACAAAGAGAATG
TTAAAGCTTCTGGCCCCGGGCAAACTCAAAATAGCGGCCTTCCCGAATTT
CTACCCTATATGCTATGATACATCTCAAAACATGGGAGACCGGCATCCGA
GCCCTGCAGGTACCATATCTGAGGCGAAACTAGATGAATATAATCCAGAC
TCTACACAAGGACACTTTGCTGGATTGGAAGTCGAACTTCTCCTCCGGTT
TTGTAAAGAATACGGGTTAGAGCCGGAGATCATCGCTGTGCAAGACTTCG
ACAACTTATGGACCTACCCCGTGAAACAAAAAGCCGACGTGTGCATTGGA
GGTATCACTGTCGCCCCCAATCGTACTCATCCAGGTCTAGCGTGGAGTGA
GGCATACTACAAAGTAAGCCGCACGGTGATTTATCACCGTCGACGCCCTC
CAAGGCCTGGGATGGGCTTCCCTCAAGCTATGGAAGGAGTCGTTCGCGGC
GTGCCCGGGTCGACAGGCTTCAAGGACGCCAAAAGACGCCTGTGT
back to top

Coding sequence (CDS) from alignment at KK037253.1:318441..319385-

>rna9448 ID=rna9448|Name=rna9448|organism=Nannochloropsis gaditana|type=CDS|length=585bp|location=Sequence derived from alignment at KK037253.1:318441..319385- (Nannochloropsis gaditana)
ATGGCAACCGAATTCCGTCTTCAAGACATCTCCAACATTCAAGCAACGAC
ACCACCAAGGCGGGACATCCAGCAAAGAACAAAGAGAATGTTAAAGCTTC
TGGCCCCGGGCAAACTCAAAATAGCGGCCTTCCCGAATTTCTACCCTATA
TGCTATGATACATCTCAAAACATGGGAGACCGGCATCCGAGCCCTGCAGG
TACCATATCTGAGGCGAAACTAGATGAATATAATCCAGACTCTACACAAG
GACACTTTGCTGGATTGGAAGTCGAACTTCTCCTCCGGTTTTGTAAAGAA
TACGGGTTAGAGCCGGAGATCATCGCTGTGCAAGACTTCGACAACTTATG
GACCTACCCCGTGAAACAAAAAGCCGACGTGTGCATTGGAGGTATCACTG
TCGCCCCCAATCGTACTCATCCAGGTCTAGCGTGGAGTGAGGCATACTAC
AAAGTAAGCCGCACGGTGATTTATCACCGTCGACGCCCTCCAAGGCCTGG
GATGGGCTTCCCTCAAGCTATGGAAGGAGTCGTTCGCGGCGTGCCCGGGT
CGACAGGCTTCAAGGACGCCAAAAGACGCCTGTGT
back to top
Synonyms
Publications