EWM21255.1, cds9418 (CDS) Nannochloropsis gaditana

Overview
NameEWM21255.1
Unique Namecds9418
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:318441..319025 -

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Properties
Property NameValue
Start range318441
Start range.
Protein idEWM21255.1
Productslt family
Partialtrue
Orig transcript idgnl|cribi|Naga_100908g3.7648.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:318441..319025 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21255.1 vs. NCBI_GenBank
Match: gi|585101391|gb|EWM21255.1| (slt family, partial [Nannochloropsis gaditana])

HSP 1 Score: 409.838 bits (1052), Expect = 5.552e-145
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MATEFRLQDISNIQATTPPRRDIQQRTKRMLKLLAPGKLKIAAFPNFYPICYDTSQNMGDRHPSPAGTISEAKLDEYNPDSTQGHFAGLEVELLLRFCKEYGLEPEIIAVQDFDNLWTYPVKQKADVCIGGITVAPNRTHPGLAWSEAYYKVSRTVIYHRRRPPRPGMGFPQAMEGVVRGVPGSTGFKDAKRRLC 195
            MATEFRLQDISNIQATTPPRRDIQQRTKRMLKLLAPGKLKIAAFPNFYPICYDTSQNMGDRHPSPAGTISEAKLDEYNPDSTQGHFAGLEVELLLRFCKEYGLEPEIIAVQDFDNLWTYPVKQKADVCIGGITVAPNRTHPGLAWSEAYYKVSRTVIYHRRRPPRPGMGFPQAMEGVVRGVPGSTGFKDAKRRLC
Sbjct:    1 MATEFRLQDISNIQATTPPRRDIQQRTKRMLKLLAPGKLKIAAFPNFYPICYDTSQNMGDRHPSPAGTISEAKLDEYNPDSTQGHFAGLEVELLLRFCKEYGLEPEIIAVQDFDNLWTYPVKQKADVCIGGITVAPNRTHPGLAWSEAYYKVSRTVIYHRRRPPRPGMGFPQAMEGVVRGVPGSTGFKDAKRRLC 195          
BLAST of EWM21255.1 vs. NCBI_GenBank
Match: gi|1125753621|ref|WP_075081291.1| (hypothetical protein [Terrimicrobium sacchariphilum] >gi|1012436684|dbj|GAT35487.1| ABC-type amino acid transport substrate-binding protein [Terrimicrobium sacchariphilum])

HSP 1 Score: 61.6178 bits (148), Expect = 2.663e-8
Identity = 43/135 (31.85%), Postives = 61/135 (45.19%), Query Frame = 0
Query:   23 IQQRTKRMLKLLAPGKLKIAAFPNFYPICYDTSQNMGDRHPSPAGTISEAKLDEYNPDSTQGHFAGLEVELLLRFCKEYGLEPEIIAVQDFDNLWTYPVKQKADVCIGGITVAPNRTHPGLAWSEAYYKVSRTVI 157
            +Q  T   L  L+ G+L+IAAFP F P  +      GDR               Y          G ++  L  F   +GLEP ++   DF  LW  P +Q ADV   GI++ P   + G+ WS  Y +V RT++
Sbjct:    1 MQFFTHTSLSTLSSGRLRIAAFPGFAPFSW----REGDR--------------AY----------GRDIAFLTLFASLHGLEP-VVEFHDFYRLWELPGRQAADVAASGISMRPA-CNDGVTWSRPYSEVRRTLL 105          
The following BLAST results are available for this feature:
BLAST of EWM21255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101391|gb|EWM21255.1|5.552e-145100.00slt family, partial [Nannochloropsis gaditana][more]
gi|1125753621|ref|WP_075081291.1|2.663e-831.85hypothetical protein [Terrimicrobium sacchariphilu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9448rna9448Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications