rna9445, rna9445 (mRNA) Nannochloropsis gaditana

Overview
Namerna9445
Unique Namerna9445
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length237
Alignment locationKK037253.1:311810..312891 -

Link to JBrowse

Properties
Property NameValue
Productatp-dependent rna helicase dhx8
Orig transcript idgnl|cribi|Naga_101403g1.2491.mrna
Orig protein idgnl|cribi|Naga_101403g1.2491
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:311810..312891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101403g1gene9166Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9445rna9445-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21258.1cds9415Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9445 ID=rna9445|Name=rna9445|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGACCCAAAACCAGCTGGCTAAAGAACGTCGGGAGCTTCGACAGGCACA
AGTCTCCTCTCTTATCGACCAGATCCCCAAGGACTTCAACAAATCTTGGA
TCGATCCGCATCAATCTGGGAGACAATCTGTCCAAACCGGAGTGGAAAGA
ACAGGTACGCCGCGCCCTCCCTCTCCCCCTCCCTCCCCCCCTGCTCCCTT
CCTTCCTTTGCCCGTTTCCGTCCCCCCGTACCCTTAG
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protein sequence of rna9445

>rna9445-protein ID=rna9445-protein|Name=rna9445|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRT
ALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPRE
ARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPP
PLGAPPFSLYLFLPSHPHMGPSLSV
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mRNA from alignment at KK037253.1:311810..312891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9445 ID=rna9445|Name=rna9445|organism=Nannochloropsis gaditana|type=mRNA|length=1082bp|location=Sequence derived from alignment at KK037253.1:311810..312891- (Nannochloropsis gaditana)
AATATCTCCTTACGAATGCGAGAGGTTTTCATTTCCTGCCTCGACCTCCC
CCCTCTCACTAAGCTCACACCACCCTTTATCTATGATGCACAGGGACCGC
CGCAGGCACCATGGCGGCGTTAGACAAGCTGCAAGAACTTTCGCTTGTCT
CTAAGATATGCACGGAGCTGGACAGTCATTTAGGTCTGGCGGACAAGACT
TTGGCGGAGTTCATCATCCACCTGGCCGAAAGCCATGGGGACGCCAAGGT
TTGGGGGATGGGTAGGAGGAAAGGAAAAAAGGGAATGGATAAAATGTACC
TGAACCGTGATGGAGATGTGCACAGTCGTGAAGAGACGTAGCAAAGGTGC
GAATAGTGAAAAGTGGGAAGGCTTTTAAAAAACACATGCGCATCCTAAGT
TTTTAAGGGGGGGGGGGGCCTCAAAGCTTGAACGGCAGTGCTCTCACTTT
CCCCAATTTCTCACCTGGCCCTCCCCGTCCATCAATCTTTCCCCTTCCTC
TTAGTCCTTTCGTACTGCATTGGACGAAAATGGGGCAGAATTTCCTCCAA
CATTTTGTGACAAGCTCTTCAATCTCATTAAAGCGATGAGGGTGAGGGAG
GCCTAGGCGCGAGCGGGAGGCCGGGAAGAGGGAAAAACCAGAGAAAGGGA
GGAAAGCACGGGAAGCATTCGTTGTTTGGCTTTAAGAGAGGGACGGCCCT
GAATATCTCTGCCGTTCGTACTTTGTGTCTAGTAGTTTGACGCCTAGTGG
CCTTCGACCCATCGATCCTTTCCCTCCATACAGCCCCACAGAGTCGGGAG
AAAGAAAACTTACAGCAACGGGGATGGCGGGGAGCATGAGCATGTTGAAC
CTCGCGAAGCCCGGAACGCCAAAGAAGCAGCGTTCCCAGGACTTAGGTGC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTATCCCTCCCTCACTC
CCTTCCTCGTCTCTTTCTTCCTCCTCTCTCCCACTCCCCCTTCCTCCCTC
CCCCCCCCCCTCTTGGTGCTCCTCCATTTTCTTTATATCTCTTCCTTCCT
TCACATCCTCACATGGGCCCTTCACTCTCCGT
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Coding sequence (CDS) from alignment at KK037253.1:311810..312891-

>rna9445 ID=rna9445|Name=rna9445|organism=Nannochloropsis gaditana|type=CDS|length=1572bp|location=Sequence derived from alignment at KK037253.1:311810..312891- (Nannochloropsis gaditana)
CCCCACAGAGTCGGGAGAAAGAAAACTTACAGCAACGGGGATGGCGGGGA
GCATGAGCATGTTGAACCTCGCGAAGCCCGGAACGCCAAAGAAGCAGCGT
TCCCAGGACTTAGGTGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTATCCCTCCCTCACTCCCTTCCTCGTCTCTTTCTTCCTCCTCTCTCCCA
CTCCCCCTTCCTCCCTCCCCCCCCCCCTCTTGGTGCTCCTCCATTTTCTT
TATATCTCTTCCTTCCTTCACATCCTCACATGGGCCCTTCACTCTCCGTT
CCTTTCGTACTGCATTGGACGAAAATGGGGCAGAATTTCCTCCAACATTT
TGTGACAAGCTCTTCAATCTCATTAAAGCGATGAGGATGGCGGCGTTAGA
CAAGCTGCAAGAACTTTCGCTTGTCTCTAAGATATGCACGGAGCTGGACA
GTCATTTAGGTCTGGCGGACAAGACTTTGGCGGAGTTCATCATCCACCTG
GCCGAAAGCCATGGGGACGCCAAGCCCCACAGAGTCGGGAGAAAGAAAAC
TTACAGCAACGGGGATGGCGGGGAGCATGAGCATGTTGAACCTCGCGAAG
CCCGGAACGCCAAAGAAGCAGCGTTCCCAGGACTTAGGTGCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCTATCCCTCCCTCACTCCCTTCCTCG
TCTCTTTCTTCCTCCTCTCTCCCACTCCCCCTTCCTCCCTCCCCCCCCCC
CTCTTGGTGCTCCTCCATTTTCTTTATATCTCTTCCTTCCTTCACATCCT
CACATGGGCCCTTCACTCTCCGTTCCTTTCGTACTGCATTGGACGAAAAT
GGGGCAGAATTTCCTCCAACATTTTGTGACAAGCTCTTCAATCTCATTAA
AGCGATGAGGATGGCGGCGTTAGACAAGCTGCAAGAACTTTCGCTTGTCT
CTAAGATATGCACGGAGCTGGACAGTCATTTAGGTCTGGCGGACAAGACT
TTGGCGGAGTTCATCATCCACCTGGCCGAAAGCCATGGGGACGCCAAGCC
CCACAGAGTCGGGAGAAAGAAAACTTACAGCAACGGGGATGGCGGGGAGC
ATGAGCATGTTGAACCTCGCGAAGCCCGGAACGCCAAAGAAGCAGCGTTC
CCAGGACTTAGGTGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
ATCCCTCCCTCACTCCCTTCCTCGTCTCTTTCTTCCTCCTCTCTCCCACT
CCCCCTTCCTCCCTCCCCCCCCCCCTCTTGGTGCTCCTCCATTTTCTTTA
TATCTCTTCCTTCCTTCACATCCTCACATGGGCCCTTCACTCTCCGTTCC
TTTCGTACTGCATTGGACGAAAATGGGGCAGAATTTCCTCCAACATTTTG
TGACAAGCTCTTCAATCTCATTAAAGCGATGAGGATGGCGGCGTTAGACA
AGCTGCAAGAACTTTCGCTTGTCTCTAAGATATGCACGGAGCTGGACAGT
CATTTAGGTCTGGCGGACAAGACTTTGGCGGAGTTCATCATCCACCTGGC
CGAAAGCCATGGGGACGCCAAG
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Synonyms
Publications