EWM21258.1, cds9415 (CDS) Nannochloropsis gaditana

Overview
NameEWM21258.1
Unique Namecds9415
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:312644..312781 -
Alignment locationKK037253.1:312301..312387 -
Alignment locationKK037253.1:311810..312108 -

Link to JBrowse

Properties
Property NameValue
Start range311810
Start range.
Protein idEWM21258.1
Productatp-dependent rna helicase dhx8
Partialtrue
Orig transcript idgnl|cribi|Naga_101403g1.2491.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:312644..312781 -
KK037253.1supercontigKK037253.1:312301..312387 -
KK037253.1supercontigKK037253.1:311810..312108 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
Homology
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|585101398|gb|EWM21258.1| (atp-dependent rna helicase dhx8, partial [Nannochloropsis gaditana])

HSP 1 Score: 344.354 bits (882), Expect = 1.211e-119
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPPPLGAPPFSLYLFLPSHPHMGPSLSV 175
            MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPPPLGAPPFSLYLFLPSHPHMGPSLSV
Sbjct:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPPPLGAPPFSLYLFLPSHPHMGPSLSV 175          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|919022182|ref|XP_013394959.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like [Lingula anatina])

HSP 1 Score: 105.145 bits (261), Expect = 4.516e-23
Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSL 120
            M  L+KL+ LSLVSK+CTELD+HLGL DK LAEFII LAE +   +SF+  LDENGAEFP +F   L  LI+ M+P     KK    GDG   + V        K+  FPGL     PS+
Sbjct:    1 MNELEKLEHLSLVSKVCTELDNHLGLNDKDLAEFIISLAEKNNTYESFKKTLDENGAEFPESFTANLLRLIQHMKP-----KKKEVEGDGEVEDKV-------LKKKLFPGLAIPDDPSV 108          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|1191066860|ref|XP_020911931.1| (ATP-dependent RNA helicase DHX8-like, partial [Exaiptasia pallida])

HSP 1 Score: 98.2117 bits (243), Expect = 5.106e-23
Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRV----GRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLP 117
            M  L +L+++SLVSK+CTELD+HLG+ DK LAEFII L E   D   F+  L +NGAEFP +F   L  LI+ MRP ++    G  K  +N D   +  V+ R      +  FPGL  SLP
Sbjct:    1 MDELQQLEQISLVSKVCTELDNHLGIDDKVLAEFIIMLGEKSADVNEFKENLAKNGAEFPDSFAANLLRLIEKMRPKQIKAEPGSSKVENNDDFPTNPEVQKR------KKLFPGL--SLP 113          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|999984746|gb|KXJ23887.1| (ATP-dependent RNA helicase DHX8 [Exaiptasia pallida])

HSP 1 Score: 97.4413 bits (241), Expect = 8.863e-23
Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRV----GRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLP 117
            M  L +L+++SLVSK+CTELD+HLG+ DK LAEFII L E   D   F+  L +NGAEFP +F   L  LI+ MRP ++    G  K  +N D   +  V+ R      +  FPGL  SLP
Sbjct:    1 MDELQQLEQISLVSKVCTELDNHLGIDDKVLAEFIIMLGEKSADVNEFKENLAKNGAEFPDSFAANLLRLIEKMRPKQIKAEPGSSKVENNDDFPTNPEVQKR------KKLFPGL--SLP 113          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|299116642|emb|CBN76266.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.375 bits (259), Expect = 1.022e-22
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 0
Query:    2 AALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEH--EHVEPREARNAKEAAFPGL 112
            +++D+LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA+   D  +FR AL ENGAEFP +  D L  +I AM+P +         G   +   +    R  RN KEA FPGL
Sbjct:    4 SSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPDPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKGASAGRAGGGGAKKATPKAAVARVPRNEKEARFPGL 116          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|919022217|ref|XP_013394978.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like [Lingula anatina])

HSP 1 Score: 101.293 bits (251), Expect = 9.993e-22
Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSL 120
            M  L+KL+ LSLVSK+CTELD+HLGL DK LAEFII LAE +   +SF+  LDENGAEFP +F   L  LI+ M+P     KK    GDG   + V        K+  FPGL     PS+
Sbjct:    1 MNELEKLEHLSLVSKVCTELDNHLGLNDKDLAEFIISLAEKNNTYESFKKTLDENGAEFPESFTANLLRLIQHMKP-----KKKEVEGDGEVEDKV-------LKKKLFPGLAIPDDPSV 108          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|405971744|gb|EKC36559.1| (ATP-dependent RNA helicase DHX8 [Crassostrea gigas])

HSP 1 Score: 93.9745 bits (232), Expect = 7.489e-21
Identity = 56/127 (44.09%), Postives = 71/127 (55.91%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPH---RVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSL 124
            M  L KL+ LSLVSK+CTEL++HLGL DK LAEFIIHLAE +   + F+ ALDENGAEF  +    L  LI+ M+P     V  KK     +      +E       K+  FPGL  +  P +   L
Sbjct:    1 MDELQKLEYLSLVSKVCTELENHLGLNDKDLAEFIIHLAEKNDTFEKFKKALDENGAEFADSLVANLLRLIQKMKPKPKAEVKLKKEEEIDNETLKSDIE------IKKKLFPGLAIADDPKIRDML 121          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|449692081|ref|XP_004212894.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like, partial [Hydra vulgaris])

HSP 1 Score: 92.0485 bits (227), Expect = 1.036e-20
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKK 83
            M  L +L+ LSLVSK+CTEL++HLG+ DKTLAEFII LA      +SF++ L++NGAEFP +    L+ LIKA++P    +KK
Sbjct:    1 MEELQQLEFLSLVSKVCTELENHLGMNDKTLAEFIIMLAGKSKTVESFKSRLEKNGAEFPDSLISNLYRLIKALQPVTSSKKK 83          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|196016824|ref|XP_002118262.1| (hypothetical protein TRIADDRAFT_33832 [Trichoplax adhaerens] >gi|190579163|gb|EDV19265.1| hypothetical protein TRIADDRAFT_33832, partial [Trichoplax adhaerens])

HSP 1 Score: 90.1225 bits (222), Expect = 5.723e-20
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0
Query:    1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPH 77
            M  L +L+ LSLVSK+CTEL++HLGL DK LAEFII LAE +   + F+  L ENGAEFP +F   L  +I+ M+P 
Sbjct:    1 MDELQRLEHLSLVSKVCTELENHLGLNDKDLAEFIISLAEQNSTLEQFKAVLAENGAEFPDSFVANLLRIIQQMKPE 77          
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|291228613|ref|XP_002734274.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like [Saccoglossus kowalevskii])

HSP 1 Score: 96.2857 bits (238), Expect = 5.748e-20
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    4 LDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGL 112
            LDKL+ LSLVSK+CTELD+HLGL DK LAEFII+LAE +    +F++AL ENGAEFP +F   L  LI+ M+P         +  D    E +     +  K  AFPGL
Sbjct:    7 LDKLEYLSLVSKVCTELDNHLGLNDKDLAEFIINLAEKNNAFDTFKSALVENGAEFPDSFISNLLRLIQRMKP---------AKKDIKVEEEIVDDSRKKRKAEAFPGL 106          
The following BLAST results are available for this feature:
BLAST of EWM21258.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101398|gb|EWM21258.1|1.211e-119100.00atp-dependent rna helicase dhx8, partial [Nannochl... [more]
gi|919022182|ref|XP_013394959.1|4.516e-2350.00PREDICTED: ATP-dependent RNA helicase DHX8-like [L... [more]
gi|1191066860|ref|XP_020911931.1|5.106e-2345.45ATP-dependent RNA helicase DHX8-like, partial [Exa... [more]
gi|999984746|gb|KXJ23887.1|8.863e-2345.45ATP-dependent RNA helicase DHX8 [Exaiptasia pallid... [more]
gi|299116642|emb|CBN76266.1|1.022e-2251.33conserved unknown protein [Ectocarpus siliculosus][more]
gi|919022217|ref|XP_013394978.1|9.993e-2250.00PREDICTED: ATP-dependent RNA helicase DHX8-like [L... [more]
gi|405971744|gb|EKC36559.1|7.489e-2144.09ATP-dependent RNA helicase DHX8 [Crassostrea gigas... [more]
gi|449692081|ref|XP_004212894.1|1.036e-2053.01PREDICTED: ATP-dependent RNA helicase DHX8-like, p... [more]
gi|196016824|ref|XP_002118262.1|5.723e-2054.55hypothetical protein TRIADDRAFT_33832 [Trichoplax ... [more]
gi|291228613|ref|XP_002734274.1|5.748e-2049.54PREDICTED: ATP-dependent RNA helicase DHX8-like [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9445rna9445Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications