EWM21258.1, cds9415 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|585101398|gb|EWM21258.1| (atp-dependent rna helicase dhx8, partial [Nannochloropsis gaditana]) HSP 1 Score: 344.354 bits (882), Expect = 1.211e-119 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPPPLGAPPFSLYLFLPSHPHMGPSLSV 175
MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPPPLGAPPFSLYLFLPSHPHMGPSLSV
Sbjct: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSLPLSLPHSLPRLFLPPLSHSPFLPPPPPLGAPPFSLYLFLPSHPHMGPSLSV 175
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|919022182|ref|XP_013394959.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like [Lingula anatina]) HSP 1 Score: 105.145 bits (261), Expect = 4.516e-23 Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSL 120
M L+KL+ LSLVSK+CTELD+HLGL DK LAEFII LAE + +SF+ LDENGAEFP +F L LI+ M+P KK GDG + V K+ FPGL PS+
Sbjct: 1 MNELEKLEHLSLVSKVCTELDNHLGLNDKDLAEFIISLAEKNNTYESFKKTLDENGAEFPESFTANLLRLIQHMKP-----KKKEVEGDGEVEDKV-------LKKKLFPGLAIPDDPSV 108
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|1191066860|ref|XP_020911931.1| (ATP-dependent RNA helicase DHX8-like, partial [Exaiptasia pallida]) HSP 1 Score: 98.2117 bits (243), Expect = 5.106e-23 Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRV----GRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLP 117
M L +L+++SLVSK+CTELD+HLG+ DK LAEFII L E D F+ L +NGAEFP +F L LI+ MRP ++ G K +N D + V+ R + FPGL SLP
Sbjct: 1 MDELQQLEQISLVSKVCTELDNHLGIDDKVLAEFIIMLGEKSADVNEFKENLAKNGAEFPDSFAANLLRLIEKMRPKQIKAEPGSSKVENNDDFPTNPEVQKR------KKLFPGL--SLP 113
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|999984746|gb|KXJ23887.1| (ATP-dependent RNA helicase DHX8 [Exaiptasia pallida]) HSP 1 Score: 97.4413 bits (241), Expect = 8.863e-23 Identity = 55/121 (45.45%), Postives = 72/121 (59.50%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRV----GRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLP 117
M L +L+++SLVSK+CTELD+HLG+ DK LAEFII L E D F+ L +NGAEFP +F L LI+ MRP ++ G K +N D + V+ R + FPGL SLP
Sbjct: 1 MDELQQLEQISLVSKVCTELDNHLGIDDKVLAEFIIMLGEKSADVNEFKENLAKNGAEFPDSFAANLLRLIEKMRPKQIKAEPGSSKVENNDDFPTNPEVQKR------KKLFPGL--SLP 113
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|299116642|emb|CBN76266.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 104.375 bits (259), Expect = 1.022e-22 Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 0
Query: 2 AALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEH--EHVEPREARNAKEAAFPGL 112
+++D+LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA+ D +FR AL ENGAEFP + D L +I AM+P + G + + R RN KEA FPGL
Sbjct: 4 SSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPDPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKGASAGRAGGGGAKKATPKAAVARVPRNEKEARFPGL 116
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|919022217|ref|XP_013394978.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like [Lingula anatina]) HSP 1 Score: 101.293 bits (251), Expect = 9.993e-22 Identity = 60/120 (50.00%), Postives = 73/120 (60.83%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSL 120
M L+KL+ LSLVSK+CTELD+HLGL DK LAEFII LAE + +SF+ LDENGAEFP +F L LI+ M+P KK GDG + V K+ FPGL PS+
Sbjct: 1 MNELEKLEHLSLVSKVCTELDNHLGLNDKDLAEFIISLAEKNNTYESFKKTLDENGAEFPESFTANLLRLIQHMKP-----KKKEVEGDGEVEDKV-------LKKKLFPGLAIPDDPSV 108
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|405971744|gb|EKC36559.1| (ATP-dependent RNA helicase DHX8 [Crassostrea gigas]) HSP 1 Score: 93.9745 bits (232), Expect = 7.489e-21 Identity = 56/127 (44.09%), Postives = 71/127 (55.91%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPH---RVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGLRCSLPPSLPPSL 124
M L KL+ LSLVSK+CTEL++HLGL DK LAEFIIHLAE + + F+ ALDENGAEF + L LI+ M+P V KK + +E K+ FPGL + P + L
Sbjct: 1 MDELQKLEYLSLVSKVCTELENHLGLNDKDLAEFIIHLAEKNDTFEKFKKALDENGAEFADSLVANLLRLIQKMKPKPKAEVKLKKEEEIDNETLKSDIE------IKKKLFPGLAIADDPKIRDML 121
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|449692081|ref|XP_004212894.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like, partial [Hydra vulgaris]) HSP 1 Score: 92.0485 bits (227), Expect = 1.036e-20 Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKK 83
M L +L+ LSLVSK+CTEL++HLG+ DKTLAEFII LA +SF++ L++NGAEFP + L+ LIKA++P +KK
Sbjct: 1 MEELQQLEFLSLVSKVCTELENHLGMNDKTLAEFIIMLAGKSKTVESFKSRLEKNGAEFPDSLISNLYRLIKALQPVTSSKKK 83
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|196016824|ref|XP_002118262.1| (hypothetical protein TRIADDRAFT_33832 [Trichoplax adhaerens] >gi|190579163|gb|EDV19265.1| hypothetical protein TRIADDRAFT_33832, partial [Trichoplax adhaerens]) HSP 1 Score: 90.1225 bits (222), Expect = 5.723e-20 Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0
Query: 1 MAALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPH 77
M L +L+ LSLVSK+CTEL++HLGL DK LAEFII LAE + + F+ L ENGAEFP +F L +I+ M+P
Sbjct: 1 MDELQRLEHLSLVSKVCTELENHLGLNDKDLAEFIISLAEQNSTLEQFKAVLAENGAEFPDSFVANLLRIIQQMKPE 77
BLAST of EWM21258.1 vs. NCBI_GenBank
Match: gi|291228613|ref|XP_002734274.1| (PREDICTED: ATP-dependent RNA helicase DHX8-like [Saccoglossus kowalevskii]) HSP 1 Score: 96.2857 bits (238), Expect = 5.748e-20 Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 0
Query: 4 LDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRVGRKKTYSNGDGGEHEHVEPREARNAKEAAFPGL 112
LDKL+ LSLVSK+CTELD+HLGL DK LAEFII+LAE + +F++AL ENGAEFP +F L LI+ M+P + D E + + K AFPGL
Sbjct: 7 LDKLEYLSLVSKVCTELDNHLGLNDKDLAEFIINLAEKNNAFDTFKSALVENGAEFPDSFISNLLRLIQRMKP---------AKKDIKVEEEIVDDSRKKRKAEAFPGL 106 The following BLAST results are available for this feature:
BLAST of EWM21258.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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