rna9444, rna9444 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9444
Unique Name	rna9444
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	962
Alignment location	KK037253.1:310734..311169 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102772g1.7966.mrna
Orig protein id	gnl\|cribi\|Naga_102772g1.7966
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:310734..311169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102772g1	gene9165	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9444	rna9444-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21259.1	cds9414	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:310734..311169-
coding sequence from alignment at KK037253.1:310734..311169-

mRNA sequence

>rna9444 ID=rna9444|Name=rna9444|organism=Nannochloropsis gaditana|type=mRNA|length=962bp
ATAATCCACGGCACAAGAATGGAGAAATTCGACCCTGGCAATCCGTCACT
CATGATAAATCTTCTGCCAAGGACTTGGGAATTGCATGTCCACGAAAGGC
TTCTCAATTTCATGTCAAAATACCCCAGGGCGAGGGGTTATCAGGCAAAA
GTCTGCCATGCAAGGATGTTTCTCCCAAAAATCCCAGGGCAAGGGCGCAA
ATAAAGTGTAAAAGGCATTACTCTACAATGCCACGCGCCCTCCAAGCTGT
TATTCTAGACGCGCACACATATGTGCGTTCCTGACCGTGGTCGTGGATTC
CGTATGGTCGTCTTCAGCCCGGGGACTGATGAAGCCACCACGGTCATCTT
TGTACCGCTTTGTTTTCCACGTCTGCCTGGGTCTTTCCCTCGTCCCAGAT
TGCCCTGCTTTCCTTGTATCCCCTCCCTCCTTCCCTCTCTCCTTCCCTTC
TTCCTCCACCGCCCTGCCCGCCAAGAAACCCGCCTCCAAAAAAGGTGGCG
CCACAGGCCCCAGCACTGTCAAAGGCTTTGGGAGCTCGAAACCTTCTCCC
TCGTCGTCCTCGTCCTTCCCCGGCCTTCCCCACACCCTCCTCCGAGACCA
GGGGCATTTAAGCCTCATAGATTGGGTGCAACAACGAGGAGGAGAGATCA
ATCACCTGGGGGTTGCCTCTGTTCAGCCCCAGAACATCCGAGGCATCGTT
ACCCTCAAACCCTTCAAAAAAGGGGAGACAATCATCAGCATCCCGTACGC
CCTCGCCATCGACGTCACCCCTACGGCCCTCTCCCCCTCCGCCGCGGCTC
CCAAGCTGGCAGACCCAGTGCCCGCCGCCCTGGAGCTCTTGAAACAACTG
GATGATCCGGCATTCGCCGCAGCATATGCCCCGTACTTGGCCATGGTACC
TTCCCCTACCGCCAAGGAGGGCGAAGGAGGATACGGGATGACCACAGGTG
AGGACTGAGGGA

protein sequence of rna9444

>rna9444-protein ID=rna9444-protein|Name=rna9444|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDPHQSGRQSVQTGVER
TGTPRPPSPPPSPPAPFLPLPVSVPPYP

mRNA from alignment at KK037253.1:310734..311169-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9444 ID=rna9444|Name=rna9444|organism=Nannochloropsis gaditana|type=mRNA|length=436bp|location=Sequence derived from alignment at KK037253.1:310734..311169- (Nannochloropsis gaditana)
ATGACCCAAAACCAGCTGGCTAAAGAACGTCGGGAGCTTCGACAGGCACA
AGTCTCCTCTCTTATCGACCAGATCCCCAAGGTGAACCCCACCGCCCTCC
TTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCATTTTTTGCCCTCTTTCCC
TCCCTTCCTCCTTTTCTTGTACCTCATGACCTTCCCCCTTTTCCACCCTC
CCTTCTCCCTCCCTCCCTCCCCCCCGTTCTCCCTAGGACTTCAACAAATC
TTGGATCGATCCGGTCCCGGAGGCGGGCGAGCGGCACTTCGCACAGGAGC
TAAGAAGCATCAATCTGGGAGACAATCTGTCCAAACCGGAGTGGAAAGAA
CAGGTACGCCGCGCCCTCCCTCTCCCCCTCCCTCCCCCCCTGCTCCCTTC
CTTCCTTTGCCCGTTTCCGTCCCCCCGTACCCTTAG

Coding sequence (CDS) from alignment at KK037253.1:310734..311169-

>rna9444 ID=rna9444|Name=rna9444|organism=Nannochloropsis gaditana|type=CDS|length=711bp|location=Sequence derived from alignment at KK037253.1:310734..311169- (Nannochloropsis gaditana)
CATCAATCTGGGAGACAATCTGTCCAAACCGGAGTGGAAAGAACAGGTAC
GCCGCGCCCTCCCTCTCCCCCTCCCTCCCCCCCTGCTCCCTTCCTTCCTT
TGCCCGTTTCCGTCCCCCCGTACCCTTAGGACTTCAACAAATCTTGGATC
GATCCGATGACCCAAAACCAGCTGGCTAAAGAACGTCGGGAGCTTCGACA
GGCACAAGTCTCCTCTCTTATCGACCAGATCCCCAAGCATCAATCTGGGA
GACAATCTGTCCAAACCGGAGTGGAAAGAACAGGTACGCCGCGCCCTCCC
TCTCCCCCTCCCTCCCCCCCTGCTCCCTTCCTTCCTTTGCCCGTTTCCGT
CCCCCCGTACCCTTAGGACTTCAACAAATCTTGGATCGATCCGATGACCC
AAAACCAGCTGGCTAAAGAACGTCGGGAGCTTCGACAGGCACAAGTCTCC
TCTCTTATCGACCAGATCCCCAAGCATCAATCTGGGAGACAATCTGTCCA
AACCGGAGTGGAAAGAACAGGTACGCCGCGCCCTCCCTCTCCCCCTCCCT
CCCCCCCTGCTCCCTTCCTTCCTTTGCCCGTTTCCGTCCCCCCGTACCCT
TAGGACTTCAACAAATCTTGGATCGATCCGATGACCCAAAACCAGCTGGC
TAAAGAACGTCGGGAGCTTCGACAGGCACAAGTCTCCTCTCTTATCGACC
AGATCCCCAAG

Synonyms

Publications