EWM21259.1, cds9414 (CDS) Nannochloropsis gaditana

Overview
NameEWM21259.1
Unique Namecds9414
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:311089..311169 -
Alignment locationKK037253.1:310907..310933 -
Alignment locationKK037253.1:310734..310862 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21259.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102772g1.7966.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:311089..311169 -
KK037253.1supercontigKK037253.1:310907..310933 -
KK037253.1supercontigKK037253.1:310734..310862 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|585101401|gb|EWM21259.1| (hypothetical protein Naga_102772g1 [Nannochloropsis gaditana])

HSP 1 Score: 154.836 bits (390), Expect = 1.060e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDPHQSGRQSVQTGVERTGTPRPPSPPPSPPAPFLPLPVSVPPYP 78
            MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDPHQSGRQSVQTGVERTGTPRPPSPPPSPPAPFLPLPVSVPPYP
Sbjct:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDPHQSGRQSVQTGVERTGTPRPPSPPPSPPAPFLPLPVSVPPYP 78          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|695383774|ref|XP_009517810.1| (hypothetical protein PHYSODRAFT_553525 [Phytophthora sojae] >gi|348690721|gb|EGZ30535.1| hypothetical protein PHYSODRAFT_553525 [Phytophthora sojae])

HSP 1 Score: 55.0694 bits (131), Expect = 4.578e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  422 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 457          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|570315290|gb|ETO63238.1| (ATP-dependent helicase HrpA [Phytophthora parasitica P1976])

HSP 1 Score: 55.0694 bits (131), Expect = 4.670e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  442 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 477          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|970651007|gb|KUF89910.1| (pre-mRNA-splicing factor ATP-dependent RNA [Phytophthora nicotianae])

HSP 1 Score: 55.0694 bits (131), Expect = 4.716e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  442 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 477          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|675176173|ref|XP_008896971.1| (ATP-dependent helicase HrpA [Phytophthora parasitica INRA-310] >gi|568102734|gb|ETN17405.1| ATP-dependent helicase HrpA [Phytophthora parasitica INRA-310])

HSP 1 Score: 55.0694 bits (131), Expect = 4.762e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  442 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 477          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|568037007|gb|ETM34605.1| (ATP-dependent helicase HrpA [Phytophthora parasitica])

HSP 1 Score: 55.0694 bits (131), Expect = 4.762e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  442 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 477          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|567977664|gb|ETL28161.1| (ATP-dependent helicase HrpA [Phytophthora parasitica] >gi|568007155|gb|ETL81400.1| ATP-dependent helicase HrpA [Phytophthora parasitica])

HSP 1 Score: 55.0694 bits (131), Expect = 4.762e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  442 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 477          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|566011459|gb|ETI34370.1| (ATP-dependent helicase HrpA [Phytophthora parasitica P1569])

HSP 1 Score: 55.0694 bits (131), Expect = 4.762e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  442 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 477          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|676378435|ref|XP_009032496.1| (hypothetical protein AURANDRAFT_19250 [Aureococcus anophagefferens] >gi|323456999|gb|EGB12865.1| hypothetical protein AURANDRAFT_19250 [Aureococcus anophagefferens])

HSP 1 Score: 55.0694 bits (131), Expect = 4.844e-7
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            +TQ  LAKERREL+QAQ ++LID IPKD N+ W DP
Sbjct:  333 LTQGALAKERRELKQAQANALIDGIPKDLNRPWEDP 368          
BLAST of EWM21259.1 vs. NCBI_GenBank
Match: gi|1214706841|gb|OWZ18325.1| (ATP-dependent helicase [Phytophthora megakarya])

HSP 1 Score: 55.0694 bits (131), Expect = 4.902e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    1 MTQNQLAKERRELRQAQVSSLIDQIPKDFNKSWIDP 36
            MTQ+ LAKERRELRQ Q + LID IPKD N+ W DP
Sbjct:  425 MTQSNLAKERRELRQTQANQLIDSIPKDLNRPWEDP 460          
The following BLAST results are available for this feature:
BLAST of EWM21259.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101401|gb|EWM21259.1|1.060e-47100.00hypothetical protein Naga_102772g1 [Nannochloropsi... [more]
gi|695383774|ref|XP_009517810.1|4.578e-769.44hypothetical protein PHYSODRAFT_553525 [Phytophtho... [more]
gi|570315290|gb|ETO63238.1|4.670e-769.44ATP-dependent helicase HrpA [Phytophthora parasiti... [more]
gi|970651007|gb|KUF89910.1|4.716e-769.44pre-mRNA-splicing factor ATP-dependent RNA [Phytop... [more]
gi|675176173|ref|XP_008896971.1|4.762e-769.44ATP-dependent helicase HrpA [Phytophthora parasiti... [more]
gi|568037007|gb|ETM34605.1|4.762e-769.44ATP-dependent helicase HrpA [Phytophthora parasiti... [more]
gi|567977664|gb|ETL28161.1|4.762e-769.44ATP-dependent helicase HrpA [Phytophthora parasiti... [more]
gi|566011459|gb|ETI34370.1|4.762e-769.44ATP-dependent helicase HrpA [Phytophthora parasiti... [more]
gi|676378435|ref|XP_009032496.1|4.844e-766.67hypothetical protein AURANDRAFT_19250 [Aureococcus... [more]
gi|1214706841|gb|OWZ18325.1|4.902e-769.44ATP-dependent helicase [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9444rna9444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications