rna9441, rna9441 (mRNA) Nannochloropsis gaditana

Overview
Namerna9441
Unique Namerna9441
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1166
Alignment locationKK037253.1:294290..295816 +

Link to JBrowse

Properties
Property NameValue
Productmeiotically up-regulated
Orig transcript idgnl|cribi|Naga_100538g6.4540.mrna
Orig protein idgnl|cribi|Naga_100538g6.4540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:294290..295816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100538g6gene9162Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9441rna9441-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21262.1cds9411Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9441 ID=rna9441|Name=rna9441|organism=Nannochloropsis gaditana|type=mRNA|length=1166bp
CGTGTAGTTTTTATTCTATCCCGGTGTCGGTGTCCTTTGTGCCTTTCCTT
GATGAGACGTGGGCAGAGATTGGGTGTTAGAAGACATGGGAAAATATCGC
TCGAGAGCATCGGCGAGGCAGAAGGCTTGAGAAAGGTTAAAGGACAGAAA
AGCCGCCACATGTGACACTGCAAGTTGAACAACAAGGACCCTAGCAGTCC
CCTTGCATGTGCCTTTGACATCCCTTGCGGGCCCCGTGTGTGCATGTGCA
CGCCATCAGTGTCATGCGATTGCACAGCCTCTTAACCTCCCATCCCGCTT
TCTTTTCTGCTTCTGTTGCTTCCGCATCTACATCCCTTCTCCCTCTTCCA
CCTTGTCTGGTCAGCTTCCTGGATCCACGGGCCGTATTATTATGACCCCA
CATGCGCGCAGTCTCACGCTTCGATATGAGAGATTGATGCGCGTAATTTC
GCCTTGCTAATGTGTGGAAAAAGTAGCAGGCAATGGAAGGATCTTGGTCC
CTTTCCCCCCTAAGTAGCCCGCACCCTAACCTTTCCATTCAGAGCACTTG
CCACAGCTCAAAACCACCTTCGTTACATACGGACATCATGCCCACATTAC
AGCGTGCCCCCTATCACACGCGTGCGCTGAAAAAAGGTGCAGGCCGTAAG
GTTCCCCGTCTCGGTCACGTCGTTAATGCATCCCACCGCCAGGCGCAATC
CGCCCATGAAATCCATGCGTTCATCAAGGAAAAAGCCTTGTTGCTCTCTC
CTCTCGCCCCCGTGGCCGCAGTGAAGGGTGAAGCCGACAAGGAGGGCGGC
AGAGAGTGGGGCCCGCTGGTGTTTATGTGGACGGTCATCACGCAGACAGG
GACAAGGAAATGAAGGAGTGGGATGTAAAGCGTGAGGGGGAAGGAAGAAA
GATAAGGAAGGGCTGAATAAAATGAGGGGACGCAAGTGGAGATGTGCGAT
GTAAAAAGGGCTCAGTAGGGGTGACGAGGGAGGAGTGGAAGTTTGTAGAC
CGAGTGAAGGAGAGGAGGAGGCGGAAGGAGTGACTCGCAGGGAAAAAAGA
AGAAACAAATTTGAAAGACGACCACTTCACTCGCCTTTGAAGGCGCTAGA
AGACGGGATGTTGCTTATAGAAATTGATTCACTCGCTGTTACCAACCCAG
CAAGCCCCTCCCCTCC
back to top

protein sequence of rna9441

>rna9441-protein ID=rna9441-protein|Name=rna9441|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
MKGGTSKSTYLRVSFFSLTKLKFRTPQVCGLVRRHAYSLLHVHPYANAFN
FNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDL
ACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHL
PSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAF
RPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCL
AMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVR
GQGEGGREGGR
back to top

mRNA from alignment at KK037253.1:294290..295816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9441 ID=rna9441|Name=rna9441|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp|location=Sequence derived from alignment at KK037253.1:294290..295816+ (Nannochloropsis gaditana)
AGCAACTCGACATCAGGAGGCCGCCCCCCAACGAACGCACTTTTAGAAGC
CCGGCAGTCGATTCGTACATTGAAGAACTCCTACCTCGGTTCAAAGACCC
GGACATCGCGGTCTTATTCGCCAATTGTCGTACGTGACGCCAGGATGGGG
CACATGCAAGGATTCCAGCAAGCGAGCCTACGCCATTCATTTCTCAttac
tctccctcttttctctttcatgCGTCAACCTttatctcctccctgccgct
tCCCCAGTGCCCAACACGCTGGACACGGCGGTGTACCACGCCAACAGCAC
GGACACGTTTTTAGTGACGGGCGACATCCCGGCCATGTGGCTCCGGGACA
GCGCCTGGCAAGTCATGCCCTACATGCGATTCCTCAGAGAGGACCCGGGC
TTGCAAACGCTggtgcggggggaagaggggaaagggccggGCGGTTCCCG
AGCATGAAGGGAGGCACCTCCAAGTCCACATACCTCCGggtctctttttt
ttccctcacAAAATTAAAATTTCGGACCCCCCAGGTCTGCGGGCTCGTCC
GGCGGCATGCCTACTCCTtgctccacgtccaccccTACGCCAACGCCTTC
AACTTCAACGACAGGTGGCCCCtcactttccctccgtcctccccacgcgt
cttttttctctcccgggccgttgccctccctcccttccctcttcccctcc
tgctttcTAAtatgctctccctccctccctccctccctccctccctccct
cagtaaCCTCTCCCACGGCCACCACGATGACCAGGTCCATCCCCCCATGA
GCGCCGGGGTCTGGGAGGCCAAGTACGAGGTCGACTCCCTGgcagccttc
ctccgcctctcacGTTCTTACTACCAACACACGCACGACCTCGCCTGTTT
TCAATACCCGgattctccctcccttcccccttctgcctcctccccccctt
cctcctccccttcctcctccctctggctCGGCgccgtccgcctcgtcctc
gacaCCCTGCAGGCCCAGCAAGCTGGCACCCTGGAgcacctcccctccgt
tcctccctccttccctccctccctccctccctccttcccgtacACGTTCC
AACGTGAGACGCGCGTGGCCAGCGAGACGCAATGGGGcgcggcgggagag
ggaggggcttcTCGCCGGTGTGCTTTGGTCCGTTCGGCTTTCCGCCCCTC
GGATGACGCCACCCTGCTCCCCTTTCACCTCCCCGGCAATGCCATGCTCA
GCGTCGagttgaaggaggtgggaaagatgctggaagagggcggggaagag
ggctggggggagggcgggggggaggtggggcgGCGGTGCCTggcgatggg
ggaggagatcgggcgggccgtggaggaggagggggtggtgtgggtgaaga
ggagggagggagggaggggagggaaagaggaggcggagggagggggctgc
gggatggaggggatggagtcGGTGTACGCGTATGAGGTACGAGgtcaggg
ggagggagggagggagggagggaggga
back to top

Coding sequence (CDS) from alignment at KK037253.1:294290..295816+

>rna9441 ID=rna9441|Name=rna9441|organism=Nannochloropsis gaditana|type=CDS|length=1870bp|location=Sequence derived from alignment at KK037253.1:294290..295816+ (Nannochloropsis gaditana)
ATGAAGGGAGGCACCTCCAAGTCCACATACCTCCGggtctcttttttttc
cctcacAAAATTAAAATTTCGGACCCCCCAGGTCTGCGGGCTCGTCCGGC
GGCATGCCTACTCCTtgctccacgtccaccccTACGCCAACGCCTTCAAC
TTCAACGACAGtaaCCTCTCCCACGGCCACCACGATGACCAGGTCCATCC
CCCCATGAGCGCCGGGGTCTGGGAGGCCAAGTACGAGGTCGACTCCCTGg
cagccttcctccgcctctcacGTTCTTACTACCAACACACGCACGACCTC
GCCTGTTTTCAATACCCGgattctccctcccttcccccttctgcctcctc
ccccccttcctcctccccttcctcctccctctggctCGGCgccgtccgcc
tcgtcctcgacaCCCTGCAGGCCCAGCAAGCTGGCACCCTGGAgcacctc
ccctccgttcctccctccttccctccctccctccctccctccttcccgta
cACGTTCCAACGTGAGACGCGCGTGGCCAGCGAGACGCAATGGGGcgcgg
cgggagagggaggggcttcTCGCCGGTGTGCTTTGGTCCGTTCGGCTTTC
CGCCCCTCGGATGACGCCACCCTGCTCCCCTTTCACCTCCCCGGCAATGC
CATGCTCAGCGTCGagttgaaggaggtgggaaagatgctggaagagggcg
gggaagagggctggggggagggcgggggggaggtggggcgGCGGTGCCTg
gcgatgggggaggagatcgggcgggccgtggaggaggagggggtggtgtg
ggtgaagaggagggagggagggaggggagggaaagaggaggcggagggag
ggggctgcgggatggaggggatggagtcGGTGTACGCGTATGAGGTACGA
GgtcagggggagggagggagggagggagggagggaATGAAGGGAGGCACC
TCCAAGTCCACATACCTCCGggtctcttttttttccctcacAAAATTAAA
ATTTCGGACCCCCCAGGTCTGCGGGCTCGTCCGGCGGCATGCCTACTCCT
tgctccacgtccaccccTACGCCAACGCCTTCAACTTCAACGACAGtaaC
CTCTCCCACGGCCACCACGATGACCAGGTCCATCCCCCCATGAGCGCCGG
GGTCTGGGAGGCCAAGTACGAGGTCGACTCCCTGgcagccttcctccgcc
tctcacGTTCTTACTACCAACACACGCACGACCTCGCCTGTTTTCAATAC
CCGgattctccctcccttcccccttctgcctcctcccccccttcctcctc
cccttcctcctccctctggctCGGCgccgtccgcctcgtcctcgacaCCC
TGCAGGCCCAGCAAGCTGGCACCCTGGAgcacctcccctccgttcctccc
tccttccctccctccctccctccctccttcccgtacACGTTCCAACGTGA
GACGCGCGTGGCCAGCGAGACGCAATGGGGcgcggcgggagagggagggg
cttcTCGCCGGTGTGCTTTGGTCCGTTCGGCTTTCCGCCCCTCGGATGAC
GCCACCCTGCTCCCCTTTCACCTCCCCGGCAATGCCATGCTCAGCGTCGa
gttgaaggaggtgggaaagatgctggaagagggcggggaagagggctggg
gggagggcgggggggaggtggggcgGCGGTGCCTggcgatgggggaggag
atcgggcgggccgtggaggaggagggggtggtgtgggtgaagaggaggga
gggagggaggggagggaaagaggaggcggagggagggggctgcgggatgg
aggggatggagtcGGTGTACGCGTATGAGGTACGAGgtcagggggaggga
gggagggagggagggaggga
back to top
Synonyms
Publications