EWM21262.1, cds9411 (CDS) Nannochloropsis gaditana

Overview
NameEWM21262.1
Unique Namecds9411
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:294743..294903 +
Alignment locationKK037253.1:295043..295816 +

Link to JBrowse

Properties
Property NameValue
End range.
End range295816
Protein idEWM21262.1
Productmeiotically up-regulated
Partialtrue
Orig transcript idgnl|cribi|Naga_100538g6.4540.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:294743..294903 +
KK037253.1supercontigKK037253.1:295043..295816 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0089286-hairpin_glycosidase-like
IPR0123416hp_glycosidase
IPR008313UCP028846
Homology
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|585101414|gb|EWM21262.1| (meiotically up-regulated, partial [Nannochloropsis gaditana])

HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 0
Query:    1 MKGGTSKSTYLRVSFFSLTKLKFRTPQVCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQGEGGREGGR 311
            MKGGTSKSTYLRVSFFSLTKLKFRTPQVCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQGEGGREGGR
Sbjct:    1 MKGGTSKSTYLRVSFFSLTKLKFRTPQVCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQGEGGREGGR 311          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|1129164057|gb|OLP76555.1| (Meiotically up-regulated gene 157 protein [Symbiodinium microadriaticum])

HSP 1 Score: 135.961 bits (341), Expect = 6.990e-33
Identity = 93/231 (40.26%), Postives = 122/231 (52.81%), Query Frame = 0
Query:   30 GLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAV 260
            GLVRRH  S+L +  +ANAFNF+ S  S    D + HP M+  ++E KYE+DSLAAFL+LSRSY+Q++++ A F                        W  AV+ V+ T+Q  Q G  E+              + PY FQR+T   ++T     G G     C L RS FRPSDDATLLPF +P NAM +VELK VG M  E G E      G +G    ++ EE+  AV
Sbjct:  119 GLVRRHTKSVL-LDSFANAFNFDSSKPSPWVSDIR-HPNMTNAIYEGKYEMDSLAAFLKLSRSYWQNSNNSAIFD---------------------ERWQRAVKKVISTIQVMQKGIDEY------------SSNLPYKFQRDTYAPTDTLI-LQGLGPPGASCGLSRSPFRPSDDATLLPFLVPANAMAAVELKHVGLMCREIGCE--DTLTGSLG----SLAEELSSAV 307          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|857973673|emb|CEP00144.1| (hypothetical protein PBRA_007878 [Plasmodiophora brassicae])

HSP 1 Score: 126.716 bits (317), Expect = 3.556e-29
Identity = 80/240 (33.33%), Postives = 117/240 (48.75%), Query Frame = 0
Query:   27 QVCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVV 266
             +CG+++R A  ++   PYANAFN N S   HG   DQ  PPMS  V+E KYE+DSLAA L+L+  YY  T D  CF   D+                   +L A   ++DT+  +Q+ T  ++                Y FQRET VA++T     G G   +R  + +  FRPSDD+   PF +P NA+  VEL+++  +L      G       +  R + +  EI  A+++ G V
Sbjct:  158 MLCGVIQRQA-EMVVADPYANAFNANAS--GHGWSRDQRRPPMSGIVFEGKYELDSLAAVLKLANQYYASTSDRTCFTLNDNR------------------FLRAATTIVDTITNEQSSTANNVDDA------------TYLFQRETTVATDTLM-LQGRGAPGKRTGMSKCYFRPSDDSNTFPFSIPSNAIACVELRKLSALLLT--VYGDNAEATRLASRAVLLSGEIADAIDQHGTV 361          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|1032151865|gb|OAO15375.1| (hypothetical protein AV274_2904 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 124.79 bits (312), Expect = 8.977e-29
Identity = 81/249 (32.53%), Postives = 119/249 (47.79%), Query Frame = 0
Query:   27 QVCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPP---------MSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVV 266
             + G++ R   S+L + PYANAFNF+ +     H DD    P         M+  ++E K+E+DSLAA L LS  YY  T D                      +P ++ W+ AV+L++DT +  Q G+  +              S+ Y+F R     +ET     GEG  S+   L+RSAFRPSDDAT LP+ +PGN ML V L+    +LE+        G  EV +  L + +EI  A+    ++
Sbjct:  110 MIRGVLNRQVKSVL-IDPYANAFNFDRTGHPDSHTDDNTKRPAALGTRQNAMTPDIFERKFEIDSLAAVLSLSHQYYNATED---------------------PTPFNARWVKAVKLIIDTARKNQIGSGPY-------------TSYEYSFTRSCNRPTETIMD--GEGWPSKFTGLIRSAFRPSDDATKLPYFIPGNVMLLVGLRRCAPILEDVA------GAPEVAKEALKLAQEIDDAMHRFAIL 315          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|1001609313|gb|KXS13102.1| (glycoside hydrolase family 125 protein [Gonapodya prolifera JEL478])

HSP 1 Score: 124.405 bits (311), Expect = 1.249e-28
Identity = 102/287 (35.54%), Postives = 132/287 (45.99%), Query Frame = 0
Query:   28 VCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHP--PMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGW-GEGG-------GEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQGE 304
            V GLV R A   +   PYANAF   D         D V P  P  + VWEAK+EVDSLAAF +LS +Y++H                    S P   P+  +WL AV   L  L+ QQ G++E      P+          Y F R T  A++T     G G  + RC LV+SAFRPSDDA+LLPF +P NAML VEL+ + ++L  G    W GE             +    + EE+  A+ + GVV           KEE           E ++AYEV G G 
Sbjct:  114 VLGLVYRQA-KCVAAFPYANAFK-RDGGQKGMWDGDAVTPDVPQGSVVWEAKWEVDSLAAFFKLSNAYHRHKR------------------SSPFIDPAHPIWLAAVERALAVLREQQRGSMEEAELAQPA----------YRFARLTDRATDTL-AMDGGGWPAARCGLVKSAFRPSDDASLLPFPIPANAMLCVELRHLVELL-NGVLATWNGETARDYYTQLANAAKEATDLAEEVFEALAKWGVV-----------KEEG----------EDMFAYEVDGFGN 347          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|671691805|emb|CDS06540.1| (hypothetical protein LRAMOSA09068 [Lichtheimia ramosa])

HSP 1 Score: 121.324 bits (303), Expect = 2.340e-27
Identity = 90/279 (32.26%), Postives = 131/279 (46.95%), Query Frame = 0
Query:   29 CGLVRRHAYSLLHVHPYANAFN--FNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSL--PPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQG 303
             GL+   A   +H+ PYANAFN   +  N      +         GV+E K+E+DSLA+FL  S  Y+  T D                     S   S  W+ AV  VL T+Q QQ           P+F P+   P +  YTF + T   +ETQ+   G G A +R  LV+S FRPSDDAT+ PF +PGNA +SVEL  + +ML +      G GG +   + ++  E++    ++ G +  + R+         +     + G + V+AYEV G G
Sbjct:  128 LGLIHMQA-QFVHLAPYANAFNEPVSMKNGVEKRENFNAAHTQQEGVYEYKWEIDSLASFLGFSYRYWNMTGD--------------------DSFVRSDTWVDAVNDVLRTIQEQQE----------PTFDPNTGEPMTPHYTFTQNTDRPTETQFNE-GIGNAVQRTGLVKSLFRPSDDATIFPFFIPGNAQISVELAHISQMLSQIHGNNKGTGGDQ---QVVSNQEQLKSIADQSGQLAKEIRDAIY------KYAVVDVPGFDKVFAYEVDGYG 365          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|661179091|emb|CDH58158.1| (duf1237 domain protein [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 121.709 bits (304), Expect = 3.387e-27
Identity = 93/290 (32.07%), Postives = 136/290 (46.90%), Query Frame = 0
Query:   30 GLVRRHAYSLLHVHPYANAFN------------FNDSNLSHGHHDDQVHPPMSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSL--PPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEE--GGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQG 303
            GL+   A   +H+ PYANAFN              + N +H H +         GV+E K+E+DSLA+FL  S  Y+  T D                     S   S  W+ AV  VL T+Q QQ           P+F P+   P +  YTF + T   +ETQ+   G G A +R  LV+S FRPSDDAT+ PF +PGNA +SVEL  + +ML +  G  +    GGG   ++ ++  E++    ++ G +  + R+         +     + G + V+AYEV G G
Sbjct:  236 GLIHMQA-QFVHLAPYANAFNEPVSMRSDGMEKRENFNAAHTHQE---------GVYEYKWEIDSLASFLGFSYRYWNMTGD--------------------DSFVRSDTWVDAVNDVLRTIQEQQE----------PTFDPNTGEPMTPHYTFTQNTDRPTETQFNE-GIGNAVQRTGLVKSLFRPSDDATIFPFFIPGNAQMSVELTHISQMLSQIHGNNKA---GGGGSDKQVVSKQEQLKAIADQSGQLAKEIRDA------IYKYAVVDVPGFDKVFAYEVDGYG 475          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|1183457353|gb|ORY81404.1| (DUF1237 domain-containing protein [Protomyces lactucaedebilis])

HSP 1 Score: 118.242 bits (295), Expect = 2.904e-26
Identity = 89/284 (31.34%), Postives = 134/284 (47.18%), Query Frame = 0
Query:   28 VCGLVRRHAYSLLHVHPYANAFN-FNDSNLSHGHHD----DQVHPPMSAG-VWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFP-YTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLE-EGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQG 303
            + G V+  AY  ++  PY N+F  F +S ++   ++    D V P +    V+E KYE+DSLAAFLR+SR YY+H+ D + F                     ++ W+ AV+ V   + A+            PSF  S     P YTFQR T +A+ET          +   ++VRSAFRPSDD+T+L + +PGNAMLSVEL  +  +L+  G ++        +  + + +   I  A+ E  V+     E    GK               V+AYE+ G G
Sbjct:  161 IAGAVQSQAY-FVNTSPYCNSFQPFPESGVAPTVNEYGKADVVKPKIDKNKVFECKYEIDSLAAFLRISRMYYEHSQDNSMF---------------------TAAWIKAVKNVFSVIAAESR----------PSFNSSGIFQVPAYTFQRTTDLATETLAILGAGYPVNGNVSMVRSAFRPSDDSTILQYFVPGNAMLSVELGHLSSLLKAAGNQKAIASNVTGLADKAMNLSTSIRNAIYEHAVI-----EHPIYGK---------------VFAYEIDGYG 392          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|855306050|ref|XP_012895626.1| (uncharacterized protein [Blastocystis hominis] >gi|300121197|emb|CBK21578.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 116.701 bits (291), Expect = 6.926e-26
Identity = 79/248 (31.85%), Postives = 116/248 (46.77%), Query Frame = 0
Query:   28 VCGLVRRHAYSLLHVHPYANAFNFNDSNLSHGHHDDQVHPP---------MSAGVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVV 266
            + G++ R   S+L + PYANAFNF+ +     H DD    P         M++ ++E K+E+DSLAA L LS  YY  T D                     ++P ++ W  AV+L++ T +  Q  +  +              S+ Y+F R     +ET     GEG  SR   L+RSAFRPSDDAT LPF +PGN M  V L+   K+L +        G   +    + + +EI  AV+   V+
Sbjct:  111 IRGVLNRQVKSVL-IDPYANAFNFDKTGHPDSHTDDSTKRPAALGTRQNAMNSYIFERKFEIDSLAAVLALSHQYYNATGD---------------------ATPFNARWAKAVKLMIQTARNNQIASGPY-------------TSYEYSFTRMCNRPTETLMD--GEGWPSRYTGLIRSAFRPSDDATKLPFFIPGNIMFLVNLRHCAKILRD------VVGDAVLAAEAMKLAQEIDDAVQNFAVL 315          
BLAST of EWM21262.1 vs. NCBI_GenBank
Match: gi|576042434|ref|XP_006695090.1| (hypothetical protein CTHT_0047200 [Chaetomium thermophilum var. thermophilum DSM 1495] >gi|340939583|gb|EGS20205.1| hypothetical protein CTHT_0047200 [Chaetomium thermophilum var. thermophilum DSM 1495])

HSP 1 Score: 114.775 bits (286), Expect = 4.891e-25
Identity = 91/280 (32.50%), Postives = 132/280 (47.14%), Query Frame = 0
Query:   30 GLVRRHAYSLLHVHPYANAFNF-NDSNLSHGHHD----DQVHPPMSA-GVWEAKYEVDSLAAFLRLSRSYYQHTHDLACFQYPDSPSLPPSASSPPSSSPSSSLWLGAVRLVLDTLQAQQAGTLEHLPSVPPSFPPSLPPSFPYTFQRETRVASETQWGAAGEGGASRRCALVRSAFRPSDDATLLPFHLPGNAMLSVELKEVGKMLEEGGEEGWGEGGGEVGRRCLAMGEEIGRAVEEEGVVWVKRREGGRGGKEEAEGGGCGMEGMESVYAYEVRGQG 303
            G++   A  +L   P+ NAF    ++ +  G ++    D V PP +   V+E K+E+DSLAAFL LS  Y+  TH  A F                    S+  WL A+R +L TL+  Q+      P+  P     LP    YTFQR+T  A+ET     G G  +RR  +VR+AFRPSDDA  LP+++PGN M+   L     + +  G++   +       +  A+  EI  AV++ G+V +    G                 +E VYAYEV G G
Sbjct:  161 GVINLQARYILS-SPFCNAFQPPAEAGIPRGVNEFAMADAVAPPPNGETVFECKFEIDSLAAFLHLSADYHDATHHTAFFS-------------------SAKNWLPAIRTILSTLRTMQS------PTYDPQNGTVLPAG--YTFQRQTTRATETT-DNDGRGHPARRTGMVRTAFRPSDDAAALPYNIPGNMMIVTGLARAATIADAVGDKSLAD-------KMRALQGEIDEAVKKFGIVPILTESG----------------DIERVYAYEVDGFG 388          
The following BLAST results are available for this feature:
BLAST of EWM21262.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101414|gb|EWM21262.1|0.000e+0100.00meiotically up-regulated, partial [Nannochloropsis... [more]
gi|1129164057|gb|OLP76555.1|6.990e-3340.26Meiotically up-regulated gene 157 protein [Symbiod... [more]
gi|857973673|emb|CEP00144.1|3.556e-2933.33hypothetical protein PBRA_007878 [Plasmodiophora b... [more]
gi|1032151865|gb|OAO15375.1|8.977e-2932.53hypothetical protein AV274_2904 [Blastocystis sp. ... [more]
gi|1001609313|gb|KXS13102.1|1.249e-2835.54glycoside hydrolase family 125 protein [Gonapodya ... [more]
gi|671691805|emb|CDS06540.1|2.340e-2732.26hypothetical protein LRAMOSA09068 [Lichtheimia ram... [more]
gi|661179091|emb|CDH58158.1|3.387e-2732.07duf1237 domain protein [Lichtheimia corymbifera JM... [more]
gi|1183457353|gb|ORY81404.1|2.904e-2631.34DUF1237 domain-containing protein [Protomyces lact... [more]
gi|855306050|ref|XP_012895626.1|6.926e-2631.85uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|576042434|ref|XP_006695090.1|4.891e-2532.50hypothetical protein CTHT_0047200 [Chaetomium ther... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9441rna9441Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications