rna944, rna944 (mRNA) Nannochloropsis gaditana

Overview
Namerna944
Unique Namerna944
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2922
Alignment locationCM002456.1:791376..791988 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g60.830.mrna
Orig protein idgnl|cribi|Naga_100022g60.830
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:791376..791988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g60gene907Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna944rna944-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29731.1cds944Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna944 ID=rna944|Name=rna944|organism=Nannochloropsis gaditana|type=mRNA|length=2922bp
ATGGTGAAGTTGACGGACATCATTTACCGAATTGTTGACCGCGCGTACGA
GGAACTCTTTGCTTTAATCACGAACACGCTTCCCGGTCAAGATTTCTTGG
ACCGCCGGGAAGAAATAGTGAACTATGTGGACGGTGCTCGACACGCGCTT
TTACATGTGCTGGTTCTCCTGGAATGGGTCTGGAGGCAGAAGGATGCCAT
TAACACAGCCACGGGGGGTAAAGTATTTATTGGATTGCAGGCTCATCATG
TTCGCGTCGCCTTGGACCGTTTGTTCTACACACACCGAGATTTGTTTCGA
AAGCAGATGGCCACCCGTCCTTACGCTTTCCCTGCTGCTATCGACATTTT
GGCGGCTGGATCTTCTGTTGCTCGCGTTTCCAGAGCAATAGACTTGTCAC
AGTCGAAGACCTGGCTAGGAGATAGACATTTCCTTCGCGAGCTTAATCTT
GCCATTCAGTCAAGCCTGATCGTTCGCGAGCGAGTGCCTCCTCAATGTAC
ATGCGCGCGCGTCGAAAATGGCACTTTAAGTTTGATGGACGCCGACAATT
TTGTCCTGCGCCTGACGCTAGAACATCCAAGCCCATTTGCAAGGTGGAGA
CTCGTAGACTTCCAGCTTCAACTCCCGTTCAAGGGAGGTTACGGGAGCTG
CGGCAATGCTTTTGAGGTATTGAAACTGGAACAGCGGCATATACAGGAAT
TACTGGCTCATTTAGCGCACCTGCTGGAGGGGAATGTTCAACCGATTTGC
GACACCTACAACCTATGCCATTCATTCTGCAATGCGTTGAAGTTAGAAAT
TTTAATTCTTCAGGCCAAAGAGCTCGCAAAAGGATGTTGGACGGGACATT
TGGAGGTGGATATCTCAAGGGCAGGTATCCTGAACATAGTTTTTTGGAAG
GGCCTCGATCTACGACCAAATCATGAAGACAAAGAGATGAGATTGTCAAC
AGTAAATTCAAAAGATGTAGAAGAAAATAGATTCAGGAAGGGAAATGCGA
TGTCAAGCTGCTGCATTCGGGTCGGGCTTGCGGGGGAAGACAAGATGCGT
CATTTACGAGCAAGGTGCTCGTACCAACTAGCTTCAAAAGGCCCGGTTGA
ACAGTCAAACGAAGAGCTTTTTAGCTTGCTTATCAATCAAGCCTGCGTTT
CAGTACCTTCTCTCTTGCGGAACGCTTTAGAAATACTTGTAGGCTACCGA
TTACAGGTGGTGTACGACATACTGAAGCAAGAAACGACTGTGAAATTTCT
GCTCCAGAAAGGAATCCTCATAATAGCCATGCACGGCAATAGTCTATACC
TTTATTTTTATGGAAGCTATTTGGCTTTTGGTGTGGATCGAAAATCAGGA
AATATCATTATTACAGCTTCCTATAGTAGATGTGGCGGCTCTGAAAAACT
GGAGGGCCTTTTGCATGAGTGGCATACCTCCATACAAGACGTCGTCAATC
CTACTTCTATCGAATCATTTATTGGGGTCTTCCAAAGAGTACTTCGGCAT
CTTTTTCTCAATTATCTGGCATTGCTGGCAAGCGCTTCATATGACCTGGT
TTGCGATCGAAAGTGTTTTGAATTACAGGATTTCGAATCGGACAAAAAGG
GAGGATCCATTTCTCGAGAAAAGTCCTCCATATACTTCTTGCTGGATTCC
AGGAGCGCTCTTGCATCGGGCGAGCTCGCTCCTTATGTAACGAATGTTGG
AGAATCGTGGTATTACCTAGAACTTGAATCCCGTGGGACGGATTTGCGCA
TGATTACGCCACATGCATATTTAGTAATGGCTTCCGCGTCCCGGAAGATG
GCACCCTTACCCTACATCAAAAATCGATATTTGCTGGACGATTTCTTGGC
CGAGGAAAAGTCTCATGAAGTGTGGCTCTCTCAGGCGGTGACTGCGGCAA
GAAAAGTGATGCAGACTTGTTTGAAGCTTGATGGAGCTGCCACGGCTCTA
GACTTCGCTTGCCCGACAGAGATATCCTTAAAGAATTTTTTGTCAAATGA
GAAACTAAATTTGAACGTGGGAAAGACACATTCTACAAGGAGCATTGAGG
AAGGAAAACTTCAGTCTCTGTCGGTATGGTGTACCGGAGACGATGATTGG
ATATGGAATATAGTTTTGCCAGCGTTGAAGGTTCCCCGCTTTAGTTTTGA
TGACAAGTTTATGTTTAAACACAGAAATGAGGGTTGGTGGCTTGAGTACA
GAAACCACGACTCTGCCCATATTATTCGACTCGGTTTTCGAGGAGTGTGG
GACCCATTACTTCTTGGCATGAAGCTCAACGATGTTGTGAAGGCAGTTGC
CGGACTTCTCTCGATGGCTGCTTCACTCCAACGGGCACATCCTCATTTCG
TTTCAAGCGATAGTGGGGAAGTGATCCCTTTGCCCCTTCCTAAGCTCATC
TTTTGGCATTCAGGCGGCCTTGCATGTGCGCTGTGCCATTCTGTGTTTGA
GCGCCCGCTAGATTCTGTTGTCAAGCATCAATCGCCTCACCAAGGGGGTC
GTTTCTATTTGGCTTTCACCGATTCGGTCATGCACCGTGTTGATGGAGCA
TGGCGCCTTATAGAAGAGGATTTTTGCCGGTGTCGTGACCTCAAAAAGCT
CCTAGAGCGCGTGGAGGCACTCGCATACCCATTGAGGACACTAGCGAGAA
CGCTTTCCATTTGGCCTAAGCTTGACTTCGTCATCTTACCATGGTCGCTT
AACAGCGTCGCTTTGACGTGTCAGGCAGCATCTAGTCGTCTGCTGTTGCT
TACCGTTGATAAGCCCCTTTCAGATTCTTGTGGTTCAGGGGTGGTGCGTC
TTACTTATGGTGAGACTAACGCTTTAGATGCAGAGCCATCCCGGGAGTGG
GCGAAGCATGAATTCGATGAAAGTGCCGTTCAGGAGGCACTTAAAGCATG
CTTTGGTTTGTCCGCCGTGTAA
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protein sequence of rna944

>rna944-protein ID=rna944-protein|Name=rna944|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MSVARATSSSPEEVQCSFRTGISLQEAFRTTYHLPIYPDNNLLAELPYHC
HLLSRCRIYCLSNNIIFVAGLSPSVHQRVNNCVCYLDWRELGEYCLKDLI
VDQKGLCCRSARGPRFMPDTCLHPSQQRQISMGSPSRM
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mRNA from alignment at CM002456.1:791376..791988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna944 ID=rna944|Name=rna944|organism=Nannochloropsis gaditana|type=mRNA|length=613bp|location=Sequence derived from alignment at CM002456.1:791376..791988+ (Nannochloropsis gaditana)
ATGAGCGTCGCAAGGgcgacttcctcctcgccagaGGAGGTTCAATGTTC
TTTCCGAACTGGAATTTCACTTCAGGAAGCATTCCGGACTACGTACCATC
TACCCATTTATCCTGACAATAACTTACTGGCCGAGCTCCCCTACCACTGC
CACCTTTTATCACGGTGTCGGTTGCGTTGGAAGCACAATAAAGTAGAGCC
TTCGCCCTACGGAGCATATATTGTCTTTCCAACAACATAATTTTCGTCGC
TGGACTATCACCTTCCGTCCACCAACGCGTCAACAATTGCGTTTGTTACT
TGGACTGGAGAGAACTTGGAGAGTACTGCCTGAAAGATCTCGTGACATTA
TAAATTTCCCTCACGACGCTGCAAGCCGTGTCGCCGTCGCGAGATCTTGC
GAATTTCATACATGCTTTGAGAATTCGAAGGAGGTTGAAATGCACGCGAC
CATTAACAAAAAGGATGTGTAAGGCCAACTCATCATGCTAAAGATTGTTG
ATCAAAAGGGACTTTGTTGTCGCTCCGCTCGGGGTCCAAGATTTATGCCT
GACACTTGTCTTCACCCTTCGCAACAAAGGCAAATATCCATGGGAAGCCC
GTCGAGGATGTGA
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Coding sequence (CDS) from alignment at CM002456.1:791376..791988+

>rna944 ID=rna944|Name=rna944|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002456.1:791376..791988+ (Nannochloropsis gaditana)
ATGAGCGTCGCAAGGgcgacttcctcctcgccagaGGAGGTTCAATGTTC
TTTCCGAACTGGAATTTCACTTCAGGAAGCATTCCGGACTACGTACCATC
TACCCATTTATCCTGACAATAACTTACTGGCCGAGCTCCCCTACCACTGC
CACCTTTTATCACGGTGTCGCATATATTGTCTTTCCAACAACATAATTTT
CGTCGCTGGACTATCACCTTCCGTCCACCAACGCGTCAACAATTGCGTTT
GTTACTTGGACTGGAGAGAACTTGGAGAGTACTGCCTGAAAGATCTCATT
GTTGATCAAAAGGGACTTTGTTGTCGCTCCGCTCGGGGTCCAAGATTTAT
GCCTGACACTTGTCTTCACCCTTCGCAACAAAGGCAAATATCCATGGGAA
GCCCGTCGAGGATGTGAATGAGCGTCGCAAGGgcgacttcctcctcgcca
gaGGAGGTTCAATGTTCTTTCCGAACTGGAATTTCACTTCAGGAAGCATT
CCGGACTACGTACCATCTACCCATTTATCCTGACAATAACTTACTGGCCG
AGCTCCCCTACCACTGCCACCTTTTATCACGGTGTCGCATATATTGTCTT
TCCAACAACATAATTTTCGTCGCTGGACTATCACCTTCCGTCCACCAACG
CGTCAACAATTGCGTTTGTTACTTGGACTGGAGAGAACTTGGAGAGTACT
GCCTGAAAGATCTCATTGTTGATCAAAAGGGACTTTGTTGTCGCTCCGCT
CGGGGTCCAAGATTTATGCCTGACACTTGTCTTCACCCTTCGCAACAAAG
GCAAATATCCATGGGAAGCCCGTCGAGGATGTGAATGAGCGTCGCAAGGg
cgacttcctcctcgccagaGGAGGTTCAATGTTCTTTCCGAACTGGAATT
TCACTTCAGGAAGCATTCCGGACTACGTACCATCTACCCATTTATCCTGA
CAATAACTTACTGGCCGAGCTCCCCTACCACTGCCACCTTTTATCACGGT
GTCGCATATATTGTCTTTCCAACAACATAATTTTCGTCGCTGGACTATCA
CCTTCCGTCCACCAACGCGTCAACAATTGCGTTTGTTACTTGGACTGGAG
AGAACTTGGAGAGTACTGCCTGAAAGATCTCATTGTTGATCAAAAGGGAC
TTTGTTGTCGCTCCGCTCGGGGTCCAAGATTTATGCCTGACACTTGTCTT
CACCCTTCGCAACAAAGGCAAATATCCATGGGAAGCCCGTCGAGGATGTG
A
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Synonyms
Publications