rna9431, rna9431 (mRNA) Nannochloropsis gaditana

Overview
Namerna9431
Unique Namerna9431
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1964
Alignment locationKK037253.1:265799..266875 -

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Properties
Property NameValue
ProductKua-ubiquitin conjugating enzyme hybrid, localization
Orig transcript idgnl|cribi|Naga_100331g2.6023.mrna
Orig protein idgnl|cribi|Naga_100331g2.6023
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:265799..266875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100331g2gene9152Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21272.1cds9401Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9431rna9431-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9431 ID=rna9431|Name=rna9431|organism=Nannochloropsis gaditana|type=mRNA|length=1964bp
CAATGACTGCCAAAAATACACACGGGACAAAATTTCATGTGTATCGTCTA
CACTCTTATGTAGGTGGCACAGGCAAGTTTTGTCTGCGGTCGCAGAAGAG
CTCTTCCGACCAACCTTCGCAAAGCTTGAGCGCTTGACCTTCTTTCATCC
CCTGTCCGTCTAAAGCCCCAGTATGTCTACCTCGACAACACGTACAACTC
CGGCCTCCGACTCAATACCGCACTCATCATATCTCGACAATGCTAGCTGC
GTATTTCCCTACATCATTGATTACTCCGACCCCCAGCTTTTGAACCAAGG
TCTCCGTGATGTCGTCCGTGAGATTGTTCCTGGCTGGGCCGCCCTTATTC
CCGTTCAACCTCCTTCCTCCGCAAGCAGTGACGCTGACATCACCATCGCA
GTCATAAGCGGTGGAATTACAAATCTCCTTTACCGGCTTGCCCTGCCTTC
CACCTGCACGCTTGCAAGCCCCCATACTCCTCGTGATGTGATAGTCCGCA
TCTACGGCCGCAATACGGAAGTTATCATCGACCGTGAAAAAGAAAATCGA
CTATTCGCTGCTTTATCCGCCGTGCAATACGCTCCAAGATATTGGGGAAG
ATTCACCAATGGGCGGGTGGAAGGTTGGTTGGATGCACGCCCGTTGAACC
CGGAGGAATTGGCTATGACGGGTCAAAGAAAAGGAAACGGCGGGACCCCA
GTGGATTTTATGGGAATGATTGCACGGGAAATGGCCAGGCTGCATGCTTT
GCAAATAGAGGTGGATGATGAAGGAGGACAGGCGAAGGAGGAGGAGGAGG
AGGAGATGGGAAAGAGGAAGAGGAACGGAGGGGGAGGAAGGAAAGCTGTG
GTATGGGAGAAGATGGAAGAGTGGGCGAGGCTGGCAAAATATATCTCATT
CGAAGGGCCCGATGGACAGGAGGGAGGCACAGAAAAACAGAGACAATTGG
AGGCGATTGGGTTGAACAATTTGGAGAAGGAAATGGAGTGGTTGAAGGAC
AAGCTGGTCGGGGAGGAAGGAGAGGGTGGAGTGGAGAGAGGAAGGGAGAG
ATCAGGGCAAGAAGCAGCCCGGTACTTCCTGGCAGAGCTGGTCTTTTCCC
ACCAGGATGTTTTGTGTGGGAACATTTTGTACAATCCGATGTGGAGAAGA
TGCGAGGTTGAGGGAGTATGGGAAGGGGCAAAAGGCGGCTCCGAGGGCCA
GGATGCGGACGCGAGGAGGGGGACGGGGAAGTCCGCACAGCAGGTATCAG
CCCTTGAAGATGGAGGGGAAAGTGAGACAACTGGGGCTGCCATCATGGGT
GAGGCCACAAGCGGCCCGGCGGAAGAAGGGCGGGTCCAATTCATCGATTT
TGAGTACGGCGGATGGAACCATCGGGGGTTTGATCTGGGCAATCACTTTT
GTGAATATGCCGGGTACAACCCTGACTACGAGGCTAGTTACCCTTCTAGA
GCGCAGCAGGAGTGGTTCTTCAAGGCTTACCTCGACGCGTGCCGATGGCA
AGTAGGAAGCAAGGAAATGGAGGAGAAAGAGGAAAACGCTTTCCTAGAAG
GATTGTACATTTGGGTGAACAGGTACGCCTGTGCCGCCCACCTTTTCTGG
GGCTATTGGGCGATCATCCAGGCCAAATACTCTCCCATCGATTTCGATTT
TTTGTTGTACGCCAGCCAGCGCTTGGCCGGCTATGCTGCTTTTAAACAAA
GGTTCTTTTGAGCGGGTGACAGGCAACGGGCGGGGAGGCCTTGCGGGAGA
ACTGCCGGGCTTTGCGGGGGGTGTCGAGGGAGGTATGCTCATGACGATCG
AAGACTACTGTGAGCTTTTGTGCGAATTCTTCCAAACCATTGTGATTCTT
ACCTTAATTATGGTAAATTTTATTTTTCATCGCTTAATCGGAGGATCATC
AGATTCGATGACAAAACAGGAGTGTACGTGAAGGTACAATCAACAAAGGA
AGAAAAATAAAAAT
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protein sequence of rna9431

>rna9431-protein ID=rna9431-protein|Name=rna9431|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQ
RIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYA
YWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPV
LWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGG
LFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSE
ALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAG
LPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSC
MSFIESNF
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mRNA from alignment at KK037253.1:265799..266875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9431 ID=rna9431|Name=rna9431|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp|location=Sequence derived from alignment at KK037253.1:265799..266875- (Nannochloropsis gaditana)
ATGTCGACCACCAAGGTAGCCACAACTACCCAATCCGCGAATTGTACATC
ACGACCAGACAGTCGCTTGCATGATTTTTCTTCTACTGCGGTCGGGGGGC
ATGACTCCGAGAGCAAAGCCCGCACGTGGAGGATTCTAACTCCAGCTCAG
CGAATAGAGAAGCTAAATGGCATGGCGATGAAGCGGGCACAAGAGATGGA
GAAGGTCCTTACCCCTTCTCATCCCGACTGGCCAATGTATGAGCTCGTAC
GAAGAGGCAACCCCGTGTTCAAGCATCGGTGGATGGTCCTTCTCTACGCG
TACTGGGCCCTCACAGGGACGGGCTTGCTCCGATGTCCCTCCTTTGCCTT
CGGAATGAGCGCGTTCATCATCACCTACCTGTATATTGAGCTGTATGGCG
CTATCTTGCATGTCAACCTTGATAACCCCTCCTTCTTGTCCCTCCCTGTG
TTGTGGGAGGCCTGTCTAGAATTCCAATATCATCATGTCATACCCAGCGA
AATTACGTTGCGTAGCTATCCTCAAATCGCCGCCGATTTGAATCTCATCG
TTGCAATGCAATTTATTGTCTGCACAATTGTCTTCTATGCGCATGGCGGA
CTTTTTAATCCTTACATTCACGCCACAATGGCATGCGGGCTGGTCAATGC
TTACCTGTTAGAGTGGGCGCATAGACAAGCTCATTTTCCTCGAGGCAAAC
GCCATGCTTTCGCGCAATATCTTCAGGACCGAGGTTTTCTTGTCTCCGAA
GCCTTGCATCGACGGCATCATCAAACTTTTGATGTGGGGTTTCCCGTCCT
TAGCGGACTGTCTGAGCCGGTGATAAACTTTGTGAGAGCCAAGGTATGCG
CGAACCAATGGGTCTGGCTGGCGGCTTTTATATCAATGACGTTTGCAGGC
TTGCCTTGCATTATCTCTGTCAATATGAGGCTTTGGGAATGGGGTGGAGA
AGTTGTGTATAGAGGAGGGCAAGAATGCGATGTATACTTATATGTCGAAG
AGATCTTGGGAATGGCGAGGGCCCTCTGTTTGGGTCTCTCATCTTCATGT
ATGAGCTTTATAGAAAGCAATTTTTGA
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Coding sequence (CDS) from alignment at KK037253.1:265799..266875-

>rna9431 ID=rna9431|Name=rna9431|organism=Nannochloropsis gaditana|type=CDS|length=1077bp|location=Sequence derived from alignment at KK037253.1:265799..266875- (Nannochloropsis gaditana)
ATGTCGACCACCAAGGTAGCCACAACTACCCAATCCGCGAATTGTACATC
ACGACCAGACAGTCGCTTGCATGATTTTTCTTCTACTGCGGTCGGGGGGC
ATGACTCCGAGAGCAAAGCCCGCACGTGGAGGATTCTAACTCCAGCTCAG
CGAATAGAGAAGCTAAATGGCATGGCGATGAAGCGGGCACAAGAGATGGA
GAAGGTCCTTACCCCTTCTCATCCCGACTGGCCAATGTATGAGCTCGTAC
GAAGAGGCAACCCCGTGTTCAAGCATCGGTGGATGGTCCTTCTCTACGCG
TACTGGGCCCTCACAGGGACGGGCTTGCTCCGATGTCCCTCCTTTGCCTT
CGGAATGAGCGCGTTCATCATCACCTACCTGTATATTGAGCTGTATGGCG
CTATCTTGCATGTCAACCTTGATAACCCCTCCTTCTTGTCCCTCCCTGTG
TTGTGGGAGGCCTGTCTAGAATTCCAATATCATCATGTCATACCCAGCGA
AATTACGTTGCGTAGCTATCCTCAAATCGCCGCCGATTTGAATCTCATCG
TTGCAATGCAATTTATTGTCTGCACAATTGTCTTCTATGCGCATGGCGGA
CTTTTTAATCCTTACATTCACGCCACAATGGCATGCGGGCTGGTCAATGC
TTACCTGTTAGAGTGGGCGCATAGACAAGCTCATTTTCCTCGAGGCAAAC
GCCATGCTTTCGCGCAATATCTTCAGGACCGAGGTTTTCTTGTCTCCGAA
GCCTTGCATCGACGGCATCATCAAACTTTTGATGTGGGGTTTCCCGTCCT
TAGCGGACTGTCTGAGCCGGTGATAAACTTTGTGAGAGCCAAGGTATGCG
CGAACCAATGGGTCTGGCTGGCGGCTTTTATATCAATGACGTTTGCAGGC
TTGCCTTGCATTATCTCTGTCAATATGAGGCTTTGGGAATGGGGTGGAGA
AGTTGTGTATAGAGGAGGGCAAGAATGCGATGTATACTTATATGTCGAAG
AGATCTTGGGAATGGCGAGGGCCCTCTGTTTGGGTCTCTCATCTTCATGT
ATGAGCTTTATAGAAAGCAATTTTTGA
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Synonyms
Publications