EWM21272.1, cds9401 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|585101427|gb|EWM21272.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0 Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query: 1 MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358
MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF
Sbjct: 1 MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|553187743|ref|XP_005854670.1| (kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294387|gb|EKU21687.1| kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0 Identity = 348/358 (97.21%), Postives = 350/358 (97.77%), Query Frame = 0
Query: 1 MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358
MSTTKVATTT+SANCTSRPDSRLHD SSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTG GLLRCPS AFGMSAFIITYLYIELYGAILHVNLDNPSFL LPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVA+QFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFI MT AGLPCIISVNMRLWEWGGEVVY GGQE DVYLYVEEILGMARALCLGLSSSCMSFIESNF
Sbjct: 1 MSTTKVATTTRSANCTSRPDSRLHDCSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGAGLLRCPSLAFGMSAFIITYLYIELYGAILHVNLDNPSFLFLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVALQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFILMTLAGLPCIISVNMRLWEWGGEVVYGGGQESDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|585105365|gb|EWM24073.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana] >gi|585105366|gb|EWM24074.1| Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 239.965 bits (611), Expect = 1.341e-73 Identity = 132/303 (43.56%), Postives = 181/303 (59.74%), Query Frame = 0
Query: 27 SSTAVGGHDS----ESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQE 325
S+ AV H S ES A+ +++LN A A + V P + ++V+ G VFKHR L+Y YWA T G+L PS AF + AF++TYLYI+LYGA+LH+ LDNP+FL LP++ EACLEFQ+HH+IP EIT+R + IAADLN I+ +++ V I+F GL +P C ++NAYL + AHRQAH KR LQ G +V+ HRRHH+T+D GFP+LSG S+ + F+ V +QWVWLA F+ +TF G+ +I + + L W E GG E
Sbjct: 17 SAEAVAQHSSMPVPESDAQDGD--ASMDIVDRLNVQAKHLAAKTIGV--PGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILF---NGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALE---EGGCE 309
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|585112244|gb|EWM29670.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 211.846 bits (538), Expect = 9.275e-63 Identity = 120/312 (38.46%), Postives = 174/312 (55.77%), Query Frame = 0
Query: 2 STTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWE 313
+ ++ AT + + TS S + + +G D ++ I++LN K+A KV +P + D+ +YE+VR+G+ VFK R M LLY YWA GLLR PS F A TY Y+ELY A+LH+ LDNP+F+ +P L + EF HH++P EI R Y I DLN+IV + F + ++F + + + +A G AYL ++AHRQAH P K FA+ LQD G LVS LHR HH+T+D GF +L G SE +I + V +Q+VWLA F MT GL ++ + + ++
Sbjct: 5 ARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDA-------------IDQLNAFMTKQAH---KVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLF---DWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYD 297
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|676396509|ref|XP_009041532.1| (hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens] >gi|323447839|gb|EGB03747.1| hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens]) HSP 1 Score: 120.168 bits (300), Expect = 1.403e-27 Identity = 73/221 (33.03%), Postives = 115/221 (52.04%), Query Frame = 0
Query: 86 GNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLD---NPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIV-CTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQ-TFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGL 301
G V+ +R++ +++ Y A+ + + PS A + YL ++Y + HVNLD N + L +L++ CLEFQ+HH IP +IT +S+ ADLN+IVA+ ++ C + Y G A L AY ++ HR AH P+ KR AQYL D+GF+ + H HH+ D F L G + +IN + N WVW +++ +F +
Sbjct: 96 GALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTTGT-----AAALTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANF-CLVGYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDV 310
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|676397009|ref|XP_009041782.1| (hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens] >gi|323447600|gb|EGB03515.1| hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens]) HSP 1 Score: 116.316 bits (290), Expect = 4.298e-26 Identity = 72/221 (32.58%), Postives = 114/221 (51.58%), Query Frame = 0
Query: 86 GNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLD---NPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIV-CTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQ-TFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGL 301
G V+ +R++ +++ Y A+ + + PS A + YL ++Y + HVNLD N + L +L++ CLEFQ+HH IP +IT +S+ ADLN+IVA+ ++ C + Y G L AY ++ HR AH P+ KR AQYL D+GF+ + H HH+ D F L G + +IN + N WVW +++ +F +
Sbjct: 96 GALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTTG-----TAATLTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANF-CLVGYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDV 310
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|954193073|gb|KRX05823.1| (hypothetical protein PPERSA_02355 [Pseudocohnilembus persalinus]) HSP 1 Score: 102.449 bits (254), Expect = 4.032e-21 Identity = 68/209 (32.54%), Postives = 102/209 (48.80%), Query Frame = 0
Query: 89 VFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFL---SLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQF-IVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAF 293
V++ R L+ AY L + + PS+ + +F + + + +L+ ILHV LD+P L +L++ CLEFQ+HHVIP++I + Y Q DLN +V + F C + G L NP AY +++H+ +H G R F LQ L+SE H+ HH D F + SG VI + K+ N VW F
Sbjct: 101 VYEDRSKYLIAAYICLGIYLVSQSPSWQITVFSFFLNFFWYDLFSGILHVCLDDPRNLIGWRSAILYKPCLEFQWHHVIPADIASKPYYQSIGDLNFVVGLIFAFQCCM-----GILSNPTAMVLSGFKFFFAYYGQFSHKMSHTFEGDRSIFVNLLQKSHILLSEKDHKVHHTNHDDNFCIGSGTFNGVIRSL-LKITTNPNVWFCIF 303
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|298706641|emb|CBJ29579.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 97.8265 bits (242), Expect = 8.565e-20 Identity = 75/242 (30.99%), Postives = 113/242 (46.69%), Query Frame = 0
Query: 63 AQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQ-TFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPC 303
AQE++ VL P E + RG M L Y G+L C A + AF + Y ++ Y +LHV LD+ +++P+L + +EFQYHH IP + R + + DLN IV + + T +F GG + + +V AY W HRQAH + KR + YLQ+ G ++S A H+ HH D + +L + PV R + W+A F+ +T C
Sbjct: 34 AQEIQFVLGGRLPFVKRIETLVRGYVCVS---MFFLIRY------GILEC-GVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMNVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLNFIVGLHLALFTALF-VRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNL--GSIFWIALFLGLTALDTIC 262
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|302763221|ref|XP_002965032.1| (hypothetical protein SELMODRAFT_82516 [Selaginella moellendorffii] >gi|300167265|gb|EFJ33870.1| hypothetical protein SELMODRAFT_82516 [Selaginella moellendorffii]) HSP 1 Score: 61.2326 bits (147), Expect = 3.493e-7 Identity = 48/176 (27.27%), Postives = 77/176 (43.75%), Query Frame = 0
Query: 118 GMSAFII--TYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAH-RQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHH-QTFDVGFPVLSGLSEPVINFVRAKVCANQWVW 289
G+SA I Y+ +L I H +DN P+ FQ HH P IT R + L + F+V +V G + ++ + C + + WAH R++ P R LQD G LVS +H +HH + FD + ++SG+ V++ A +W++
Sbjct: 43 GLSALAILSAYVLADLATGIYHWGIDNYGDDKTPLFGPQIDAFQGHHKRPWTITKRDFSNNIHSLARPATI-FLVPVLVATPGSGPVDAFLGVFLGCVVFSQQFHSWAHTRRSQLPGAVR-----ALQDLGVLVSTRMHGKHHREPFDGNYCIVSGIWNRVLDSSGVLRLAERWIY 212 The following BLAST results are available for this feature:
BLAST of EWM21272.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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