EWM21272.1, cds9401 (CDS) Nannochloropsis gaditana

Overview
NameEWM21272.1
Unique Namecds9401
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:265799..266875 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21272.1
ProductKua-ubiquitin conjugating enzyme hybrid, localization
Orig transcript idgnl|cribi|Naga_100331g2.6023.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:265799..266875 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR019547Kua
Homology
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|585101427|gb|EWM21272.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query:    1 MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358
            MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF
Sbjct:    1 MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|553187743|ref|XP_005854670.1| (kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294387|gb|EKU21687.1| kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 348/358 (97.21%), Postives = 350/358 (97.77%), Query Frame = 0
Query:    1 MSTTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQECDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358
            MSTTKVATTT+SANCTSRPDSRLHD SSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTG GLLRCPS AFGMSAFIITYLYIELYGAILHVNLDNPSFL LPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVA+QFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFI MT AGLPCIISVNMRLWEWGGEVVY GGQE DVYLYVEEILGMARALCLGLSSSCMSFIESNF
Sbjct:    1 MSTTKVATTTRSANCTSRPDSRLHDCSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGAGLLRCPSLAFGMSAFIITYLYIELYGAILHVNLDNPSFLFLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVALQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFILMTLAGLPCIISVNMRLWEWGGEVVYGGGQESDVYLYVEEILGMARALCLGLSSSCMSFIESNF 358          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|585105365|gb|EWM24073.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana] >gi|585105366|gb|EWM24074.1| Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 239.965 bits (611), Expect = 1.341e-73
Identity = 132/303 (43.56%), Postives = 181/303 (59.74%), Query Frame = 0
Query:   27 SSTAVGGHDS----ESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWEWGGEVVYRGGQE 325
            S+ AV  H S    ES A+          +++LN  A   A +   V  P    +   ++V+ G  VFKHR   L+Y YWA T  G+L  PS AF + AF++TYLYI+LYGA+LH+ LDNP+FL LP++ EACLEFQ+HH+IP EIT+R +  IAADLN I+ +++ V  I+F    GL +P       C ++NAYL + AHRQAH    KR      LQ  G +V+   HRRHH+T+D GFP+LSG S+  + F+   V  +QWVWLA F+ +TF G+  +I + + L  W  E    GG E
Sbjct:   17 SAEAVAQHSSMPVPESDAQDGD--ASMDIVDRLNVQAKHLAAKTIGV--PGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILF---NGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLPLAAWALE---EGGCE 309          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|585112244|gb|EWM29670.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 211.846 bits (538), Expect = 9.275e-63
Identity = 120/312 (38.46%), Postives = 174/312 (55.77%), Query Frame = 0
Query:    2 STTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWE 313
            + ++ AT   + + TS   S    + +  +G  D ++             I++LN    K+A    KV +P + D+ +YE+VR+G+ VFK R M LLY YWA    GLLR PS  F   A   TY Y+ELY A+LH+ LDNP+F+ +P L +   EF  HH++P EI  R Y  I  DLN+IV + F +  ++F     + +  +   +A G   AYL ++AHRQAH P  K   FA+ LQD G LVS  LHR HH+T+D GF +L G SE +I  +   V  +Q+VWLA F  MT  GL  ++ + +  ++
Sbjct:    5 ARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDA-------------IDQLNAFMTKQAH---KVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLF---DWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYD 297          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|676396509|ref|XP_009041532.1| (hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens] >gi|323447839|gb|EGB03747.1| hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens])

HSP 1 Score: 120.168 bits (300), Expect = 1.403e-27
Identity = 73/221 (33.03%), Postives = 115/221 (52.04%), Query Frame = 0
Query:   86 GNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLD---NPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIV-CTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQ-TFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGL 301
            G  V+ +R++ +++ Y A+    + + PS A  +      YL  ++Y  + HVNLD   N + L   +L++ CLEFQ+HH IP +IT +S+    ADLN+IVA+  ++ C  + Y  G        A     L  AY  ++ HR AH P+ KR   AQYL D+GF+  +  H  HH+   D  F  L G  + +IN +      N WVW   +++ +F  +
Sbjct:   96 GALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTTGT-----AAALTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANF-CLVGYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDV 310          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|676397009|ref|XP_009041782.1| (hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens] >gi|323447600|gb|EGB03515.1| hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens])

HSP 1 Score: 116.316 bits (290), Expect = 4.298e-26
Identity = 72/221 (32.58%), Postives = 114/221 (51.58%), Query Frame = 0
Query:   86 GNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLD---NPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIV-CTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQ-TFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGL 301
            G  V+ +R++ +++ Y A+    + + PS A  +      YL  ++Y  + HVNLD   N + L   +L++ CLEFQ+HH IP +IT +S+    ADLN+IVA+  ++ C  + Y  G              L  AY  ++ HR AH P+ KR   AQYL D+GF+  +  H  HH+   D  F  L G  + +IN +      N WVW   +++ +F  +
Sbjct:   96 GALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTTG-----TAATLTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANF-CLVGYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDV 310          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|954193073|gb|KRX05823.1| (hypothetical protein PPERSA_02355 [Pseudocohnilembus persalinus])

HSP 1 Score: 102.449 bits (254), Expect = 4.032e-21
Identity = 68/209 (32.54%), Postives = 102/209 (48.80%), Query Frame = 0
Query:   89 VFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFL---SLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQF-IVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAF 293
            V++ R   L+ AY  L    + + PS+   + +F + + + +L+  ILHV LD+P  L      +L++ CLEFQ+HHVIP++I  + Y Q   DLN +V + F   C +     G L NP            AY  +++H+ +H   G R  F   LQ    L+SE  H+ HH   D  F + SG    VI  +  K+  N  VW   F
Sbjct:  101 VYEDRSKYLIAAYICLGIYLVSQSPSWQITVFSFFLNFFWYDLFSGILHVCLDDPRNLIGWRSAILYKPCLEFQWHHVIPADIASKPYYQSIGDLNFVVGLIFAFQCCM-----GILSNPTAMVLSGFKFFFAYYGQFSHKMSHTFEGDRSIFVNLLQKSHILLSEKDHKVHHTNHDDNFCIGSGTFNGVIRSL-LKITTNPNVWFCIF 303          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|298706641|emb|CBJ29579.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 97.8265 bits (242), Expect = 8.565e-20
Identity = 75/242 (30.99%), Postives = 113/242 (46.69%), Query Frame = 0
Query:   63 AQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQ-TFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPC 303
            AQE++ VL    P     E + RG        M  L  Y      G+L C   A  + AF + Y  ++ Y  +LHV LD+   +++P+L +  +EFQYHH IP +   R + +   DLN IV +   + T +F   GG  +  +       +V AY   W HRQAH  + KR  +  YLQ+ G ++S A H+ HH    D  + +L   + PV    R  +      W+A F+ +T     C
Sbjct:   34 AQEIQFVLGGRLPFVKRIETLVRGYVCVS---MFFLIRY------GILEC-GVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMNVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLNFIVGLHLALFTALF-VRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNL--GSIFWIALFLGLTALDTIC 262          
BLAST of EWM21272.1 vs. NCBI_GenBank
Match: gi|302763221|ref|XP_002965032.1| (hypothetical protein SELMODRAFT_82516 [Selaginella moellendorffii] >gi|300167265|gb|EFJ33870.1| hypothetical protein SELMODRAFT_82516 [Selaginella moellendorffii])

HSP 1 Score: 61.2326 bits (147), Expect = 3.493e-7
Identity = 48/176 (27.27%), Postives = 77/176 (43.75%), Query Frame = 0
Query:  118 GMSAFII--TYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAH-RQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHH-QTFDVGFPVLSGLSEPVINFVRAKVCANQWVW 289
            G+SA  I   Y+  +L   I H  +DN      P+       FQ HH  P  IT R +      L     + F+V  +V     G  + ++   + C + +     WAH R++  P   R      LQD G LVS  +H +HH + FD  + ++SG+   V++       A +W++
Sbjct:   43 GLSALAILSAYVLADLATGIYHWGIDNYGDDKTPLFGPQIDAFQGHHKRPWTITKRDFSNNIHSLARPATI-FLVPVLVATPGSGPVDAFLGVFLGCVVFSQQFHSWAHTRRSQLPGAVR-----ALQDLGVLVSTRMHGKHHREPFDGNYCIVSGIWNRVLDSSGVLRLAERWIY 212          
The following BLAST results are available for this feature:
BLAST of EWM21272.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585101427|gb|EWM21272.1|0.000e+0100.00Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
gi|553187743|ref|XP_005854670.1|0.000e+097.21kua-ubiquitin conjugating enzyme hybrid localizati... [more]
gi|585105365|gb|EWM24073.1|1.341e-7343.56Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
gi|585112244|gb|EWM29670.1|9.275e-6338.46Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
gi|676396509|ref|XP_009041532.1|1.403e-2733.03hypothetical protein AURANDRAFT_67743 [Aureococcus... [more]
gi|676397009|ref|XP_009041782.1|4.298e-2632.58hypothetical protein AURANDRAFT_67953 [Aureococcus... [more]
gi|954193073|gb|KRX05823.1|4.032e-2132.54hypothetical protein PPERSA_02355 [Pseudocohnilemb... [more]
gi|298706641|emb|CBJ29579.1|8.565e-2030.99conserved unknown protein [Ectocarpus siliculosus][more]
gi|302763221|ref|XP_002965032.1|3.493e-727.27hypothetical protein SELMODRAFT_82516 [Selaginella... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9431rna9431Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications