rna9428, rna9428 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9428
Unique Name	rna9428
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1909
Alignment location	KK037253.1:258732..260615 +

Link to JBrowse

Properties


Property Name	Value
Product	caltractin
Orig transcript id	gnl\|cribi\|Naga_100331g6.6028.mrna
Orig protein id	gnl\|cribi\|Naga_100331g6.6028
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:258732..260615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100331g6	gene9149	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9428	rna9428-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21277.1	cds9398	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:258732..260615+
coding sequence from alignment at KK037253.1:258732..260615+

mRNA sequence

>rna9428 ID=rna9428|Name=rna9428|organism=Nannochloropsis gaditana|type=mRNA|length=1909bp
TCTCTTTGAAACTGTGCGACCACAGGCCTCAAACCTGGTATTCCCCTCTA
CGTGCCACACATCTTCCACGCATCACGTGGACAAGGTGAAGGCCTGTCCA
CAGCGAGTTGTCCTGACTTGCGAATGTGTTGGTGGCGTCCGTTTCCATTT
CTTCTCCTAAGAGTAGAGGGATCTCGCCCGCGCCGCAGTATCACCCTCGT
CACATTTCCCCACGACTCAAGCCTGATGCCGACGAGGGGTGGGGGCAAGG
CCTGCGTATGGAGGTTGTTGGAGAGACGGATGCTTCACAAGCGATTTATC
GGCTGATTTGGAAGGCTTGAGCGTCGGGGTCACGGCGGGGCGGTTCAGCA
TTGTGTCCCTTTATTCTTCATCAGGATACGAGGAGCATTGGCTCCTGGAA
TGCCCCCCGTTGGTCTCTTTTCCTTCCCTTTACTCAGTAAATCACCCCTT
CCCGCATGCGAATATATCATAGATACGTTGATAGCTAGGAGCCATGGCCC
TCCGTCAAATTTTGAAGGTTGCTACCAGTGCAGTACGTGTCCAAGCACAA
CAGCGCGGGATGCTGACAGTCGCGCGCCGGGGGATGCCTGCATTGGTTAC
AAGTTTGCAACAGCGGCAAGCCTTGTTGTCCCAGCCTGTTTGCAATGGAT
TGAGCGGGCGGAGCTTCAGTGCGCAGACGTTCTTGGACGAGAAGGAGGTG
ACAGAGCGGGTCCTCTCTGTCGTGAAGAACTTCGAGAAGGTGGAGCCTGG
GAAGGTGACGCCGGCGGCTCGATTCAAGGAAGACCTTTCCTTGGATTCTT
TGGACGTGGTGGAGGTGGTGATGGCGATCGAAGAAGAATTCGCCCTGGAA
ATTCCGGACAACGAGGCCGACAAGATCGGGTCGATTGCGGAGGCAGTGAA
ATACATCGCATCGCATCCACAGGCGAAGTAAAGCATCTTCTTAAGCGCTG
GTATGCCCCTGTCGGCGAGGGTGGGCTCAGAGGATGCGAGCGCGGGAAAA
GGAAAAGAAATGGCGGAGAAAGTGATGGGGTTGGAGTATGGGGCGATGTG
AACCTGAGGGCGTGTCCATCGGCCAGGAATATGCGGCTTGAAGGGAAGGC
TCCTAGTTTCTAAGTTTCCATTTATATCGGTTGGACTTGTCCGCGGTAGA
GAGTGGCGACTCAGTGCGGCATGAAGGCGGGGGGGAAAGGTTCAGATGAC
TAGGCGTTGGAGTCTTTGGCTTTTCGACGGACGACGATTGCTGGGGATCT
CAAGAGGCCGCGAGGGGGCAAGATGAGTAGAATAAGGGATTATTGCAGGT
AGATGGCAGGGCAGAGGAAAATGGAGGAAACAAGAAACAGAGAGAGGGAC
GAGTTGGTGGGAGCGTTGAGACAGGGTTATATGTATGTCCAGGCCCCCCC
AAAAAAGATGCAACGCAAGTTCGGAGACAACAACTGACCACAATGTTTAT
CAATGTTGGGGGGGAAATGGAAGACCGTTGGATAAAGTTGGAATGGATCC
TGTCTTTTTCTTTTGGGTTAAATGTAGGGTATGGGGGGGAGGAGGTTGAT
ACAGACTCCTGATGCTTCTTGAAACAAACTCTATGCATAATCACGTCTAT
GAACCATAACACGACCCTGTCACGGCCTAAGCGGTATCTCTGCCATGCCC
TTTGTCATTCCGTGGGAAAAACTCATCGTACATGGGAAAGATCGTCGTCT
CTGTCACGCAGAGTAGTGCTTGAGGACTCCCTCGCTTGAAGGCGAAGGCC
TAACGCAACACTTGCTACGGCCGCGACATTTTGGCACTTATCCCATGTTC
ATACAATCATGGACGACTTTTCCGACCGTTTTTATTCAGAAAGAAAAACT
GTGATTGTTCACAGGAGTGGGCGTGCACTGATAGGAAAGAATGTCGAGAG
TACTTGTGC

protein sequence of rna9428

>rna9428-protein ID=rna9428-protein|Name=rna9428|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDS
DGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDM
AAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEEL
QEMIDEADRDQDGVINEEEFFRVMRKRGNAPLDDIDSDDDY

mRNA from alignment at KK037253.1:258732..260615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9428 ID=rna9428|Name=rna9428|organism=Nannochloropsis gaditana|type=mRNA|length=1884bp|location=Sequence derived from alignment at KK037253.1:258732..260615+ (Nannochloropsis gaditana)
CAACTACCCCCAAAAGTGCACAGACACATAGAAGCCAGGCGTCATGGCCT
CTGGCATCAGCAGCAGTCGATTCCGGCAGGGTGCGGGTTTGGGCAGCCCC
CCTTCTCGCAGGCCGAAGCCCGGGGCTAAGGGCAAGGTATGGTCAGAAGT
GAAATTAAAAGGGTTTGAAAGGAATGACCGACAAAGAAAGGAAGTCGACG
TCAAAGTATGGTTAGAGAATGTAGTGCTGAGCGTTCTTTTCGGTTCCCAC
GTCTGTACAGGgcttggacgaggaagagctggaggaaatCCGAGAGGCTT
TTAACCTCTTCGACAGCGACGGGAAAGGCACGATTGACGTCAGGGAATTG
AAAGCCGCCTTCCGAGCCTTGGGATTCCAGGTGCGTTGTGAAGGACACTG
AGGGAGAAAAGCAcagggggtaggagggcaGGGGTTCCAAACGCACAGCC
CAGGAATAAGAGGAAGAGATATAGATGTCGATCTGGCAGGCCATGAAAGT
TAAAGTCAaagcttttctttccatGGCATTCCACTCGATGCGGCAGGTCA
AAAAAGCAGAGATCCGCACCTTTCTCCAAACCATTGACAAAGAGATGGCG
GCCACGGTCACCTACGATGAGTTCTTGGACATGGCTGCGCCCAAGGTGGC
TAACCGGGACGAACGGGAAGAGATTCAAAAGGTGAGGACGACGCTCAGCA
AgaggggaacggagggatCTGAGGTCCGGGGGCCTGTCTTTGGTTTGGCC
ATGGGACCATCCGACCGCGGGGGGCCCCACGGGCTGGGCCGTCGAGTCTC
TCCTTTCATGTGTCCTGGTCGATTTTCTCGCATTCCAGGTTTTTGCCCTC
TTTGACGACGATGGCACGGGCGCGATTTCCTTCCGGAACCTGAAACGGGT
GGCCACGGAGCTGGGAGAGAACTTGACGGACGAGGAACTGCAGGAAATGA
TTGGTAAGGAGGCTGCCCTGTATGTGTGAGGTgggctctccctctctctc
tatatacatctatatatatataaatGTGTCTGTAACGGGACCCCGTCAAt
atgcttcctcccctgccatacctcgcttctttttccacctccaacgGGAA
CAATATCGTCTGGCGGGTttccgggagggaggccaggtaAAGAGAGGCGT
CTGCTCATCTTTTCCTaaccctttccccctcccccccctcttcgtgtATC
AGACGAAGCAGACAGGGACCAAGACGGGGTGATCAACGAGGAGGAATTCT
TCCGCGTTATGCGAAAACGAGGGAATGCGCCCTTGGATGTGagtaaagga
gggagagggagtggagggtgggtgggtggggaaggtAATTAACTAGGAAA
GGATGGGCCAGTCCGCGCGTTTTCCGCAAGGCTGTATATCTCCCGACGTG
CGCGGGCCTTGCTGAAACTGCCAGTCAATTTCCTGGATCGTTATTTGTTC
CCCACGCACGTGCACTAATCCCCTGTGCACGCTTCTTGGCAGGACATTGA
CTCCGACGACGACTATTGAGGTGCAGGGAGGGTCGGTTTGGATGTGGAGG
TTAAGGATGGGCAATGGGCAAGAACACAGGAAGCAAGAGATATGAAGGCA
GTGGAAGTagtggaaggaaggtggaatcaaaagaagaaagtggGGAAGGG
CGTGCAGGCGAGGCACAGgtcgggacggagggcaagtgagagggagcggc
gcATCACGCATTCAGAATATAACGACGGGACGGGGAGTCACGGTTTTAGA
TGAGCATAAAAAGAAGGATGCCCTTGAATTTGGCGCCAAACTCTCTTTAT
TTTGGAGCGCGAAGGGTTACAGTGAAGTGGCTACCTAAGGAGTTAAAAAA
AACCCAGAAAAAAACCAAGGCACTTTAAACCAGC

Coding sequence (CDS) from alignment at KK037253.1:258732..260615+

>rna9428 ID=rna9428|Name=rna9428|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at KK037253.1:258732..260615+ (Nannochloropsis gaditana)
ATGGCCTCTGGCATCAGCAGCAGTCGATTCCGGCAGGGTGCGGGTTTGGG
CAGCCCCCCTTCTCGCAGGCCGAAGCCCGGGGCTAAGGGCAAGGgcttgg
acgaggaagagctggaggaaatCCGAGAGGCTTTTAACCTCTTCGACAGC
GACGGGAAAGGCACGATTGACGTCAGGGAATTGAAAGCCGCCTTCCGAGC
CTTGGGATTCCAGGTCAAAAAAGCAGAGATCCGCACCTTTCTCCAAACCA
TTGACAAAGAGATGGCGGCCACGGTCACCTACGATGAGTTCTTGGACATG
GCTGCGCCCAAGGTGGCTAACCGGGACGAACGGGAAGAGATTCAAAAGGT
TTTTGCCCTCTTTGACGACGATGGCACGGGCGCGATTTCCTTCCGGAACC
TGAAACGGGTGGCCACGGAGCTGGGAGAGAACTTGACGGACGAGGAACTG
CAGGAAATGATTGACGAAGCAGACAGGGACCAAGACGGGGTGATCAACGA
GGAGGAATTCTTCCGCGTTATGCGAAAACGAGGGAATGCGCCCTTGGATG
ACATTGACTCCGACGACGACTATTGAATGGCCTCTGGCATCAGCAGCAGT
CGATTCCGGCAGGGTGCGGGTTTGGGCAGCCCCCCTTCTCGCAGGCCGAA
GCCCGGGGCTAAGGGCAAGGgcttggacgaggaagagctggaggaaatCC
GAGAGGCTTTTAACCTCTTCGACAGCGACGGGAAAGGCACGATTGACGTC
AGGGAATTGAAAGCCGCCTTCCGAGCCTTGGGATTCCAGGTCAAAAAAGC
AGAGATCCGCACCTTTCTCCAAACCATTGACAAAGAGATGGCGGCCACGG
TCACCTACGATGAGTTCTTGGACATGGCTGCGCCCAAGGTGGCTAACCGG
GACGAACGGGAAGAGATTCAAAAGGTTTTTGCCCTCTTTGACGACGATGG
CACGGGCGCGATTTCCTTCCGGAACCTGAAACGGGTGGCCACGGAGCTGG
GAGAGAACTTGACGGACGAGGAACTGCAGGAAATGATTGACGAAGCAGAC
AGGGACCAAGACGGGGTGATCAACGAGGAGGAATTCTTCCGCGTTATGCG
AAAACGAGGGAATGCGCCCTTGGATGACATTGACTCCGACGACGACTATT
GAATGGCCTCTGGCATCAGCAGCAGTCGATTCCGGCAGGGTGCGGGTTTG
GGCAGCCCCCCTTCTCGCAGGCCGAAGCCCGGGGCTAAGGGCAAGGgctt
ggacgaggaagagctggaggaaatCCGAGAGGCTTTTAACCTCTTCGACA
GCGACGGGAAAGGCACGATTGACGTCAGGGAATTGAAAGCCGCCTTCCGA
GCCTTGGGATTCCAGGTCAAAAAAGCAGAGATCCGCACCTTTCTCCAAAC
CATTGACAAAGAGATGGCGGCCACGGTCACCTACGATGAGTTCTTGGACA
TGGCTGCGCCCAAGGTGGCTAACCGGGACGAACGGGAAGAGATTCAAAAG
GTTTTTGCCCTCTTTGACGACGATGGCACGGGCGCGATTTCCTTCCGGAA
CCTGAAACGGGTGGCCACGGAGCTGGGAGAGAACTTGACGGACGAGGAAC
TGCAGGAAATGATTGACGAAGCAGACAGGGACCAAGACGGGGTGATCAAC
GAGGAGGAATTCTTCCGCGTTATGCGAAAACGAGGGAATGCGCCCTTGGA
TGACATTGACTCCGACGACGACTATTGAATGGCCTCTGGCATCAGCAGCA
GTCGATTCCGGCAGGGTGCGGGTTTGGGCAGCCCCCCTTCTCGCAGGCCG
AAGCCCGGGGCTAAGGGCAAGGgcttggacgaggaagagctggaggaaat
CCGAGAGGCTTTTAACCTCTTCGACAGCGACGGGAAAGGCACGATTGACG
TCAGGGAATTGAAAGCCGCCTTCCGAGCCTTGGGATTCCAGGTCAAAAAA
GCAGAGATCCGCACCTTTCTCCAAACCATTGACAAAGAGATGGCGGCCAC
GGTCACCTACGATGAGTTCTTGGACATGGCTGCGCCCAAGGTGGCTAACC
GGGACGAACGGGAAGAGATTCAAAAGGTTTTTGCCCTCTTTGACGACGAT
GGCACGGGCGCGATTTCCTTCCGGAACCTGAAACGGGTGGCCACGGAGCT
GGGAGAGAACTTGACGGACGAGGAACTGCAGGAAATGATTGACGAAGCAG
ACAGGGACCAAGACGGGGTGATCAACGAGGAGGAATTCTTCCGCGTTATG
CGAAAACGAGGGAATGCGCCCTTGGATGACATTGACTCCGACGACGACTA
TTGAATGGCCTCTGGCATCAGCAGCAGTCGATTCCGGCAGGGTGCGGGTT
TGGGCAGCCCCCCTTCTCGCAGGCCGAAGCCCGGGGCTAAGGGCAAGGgc
ttggacgaggaagagctggaggaaatCCGAGAGGCTTTTAACCTCTTCGA
CAGCGACGGGAAAGGCACGATTGACGTCAGGGAATTGAAAGCCGCCTTCC
GAGCCTTGGGATTCCAGGTCAAAAAAGCAGAGATCCGCACCTTTCTCCAA
ACCATTGACAAAGAGATGGCGGCCACGGTCACCTACGATGAGTTCTTGGA
CATGGCTGCGCCCAAGGTGGCTAACCGGGACGAACGGGAAGAGATTCAAA
AGGTTTTTGCCCTCTTTGACGACGATGGCACGGGCGCGATTTCCTTCCGG
AACCTGAAACGGGTGGCCACGGAGCTGGGAGAGAACTTGACGGACGAGGA
ACTGCAGGAAATGATTGACGAAGCAGACAGGGACCAAGACGGGGTGATCA
ACGAGGAGGAATTCTTCCGCGTTATGCGAAAACGAGGGAATGCGCCCTTG
GATGACATTGACTCCGACGACGACTATTGAATGGCCTCTGGCATCAGCAG
CAGTCGATTCCGGCAGGGTGCGGGTTTGGGCAGCCCCCCTTCTCGCAGGC
CGAAGCCCGGGGCTAAGGGCAAGGgcttggacgaggaagagctggaggaa
atCCGAGAGGCTTTTAACCTCTTCGACAGCGACGGGAAAGGCACGATTGA
CGTCAGGGAATTGAAAGCCGCCTTCCGAGCCTTGGGATTCCAGGTCAAAA
AAGCAGAGATCCGCACCTTTCTCCAAACCATTGACAAAGAGATGGCGGCC
ACGGTCACCTACGATGAGTTCTTGGACATGGCTGCGCCCAAGGTGGCTAA
CCGGGACGAACGGGAAGAGATTCAAAAGGTTTTTGCCCTCTTTGACGACG
ATGGCACGGGCGCGATTTCCTTCCGGAACCTGAAACGGGTGGCCACGGAG
CTGGGAGAGAACTTGACGGACGAGGAACTGCAGGAAATGATTGACGAAGC
AGACAGGGACCAAGACGGGGTGATCAACGAGGAGGAATTCTTCCGCGTTA
TGCGAAAACGAGGGAATGCGCCCTTGGATGACATTGACTCCGACGACGAC
TATTGA

Synonyms

Publications