EWM21277.1, cds9398 (CDS) Nannochloropsis gaditana

Overview
NameEWM21277.1
Unique Namecds9398
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:258775..258867 +
Alignment locationKK037253.1:258992..259111 +
Alignment locationKK037253.1:259278..259412 +
Alignment locationKK037253.1:259570..259684 +
Alignment locationKK037253.1:259934..260019 +
Alignment locationKK037253.1:260224..260250 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21277.1
Productcaltractin
Orig transcript idgnl|cribi|Naga_100331g6.6028.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:258775..258867 +
KK037253.1supercontigKK037253.1:258992..259111 +
KK037253.1supercontigKK037253.1:259278..259412 +
KK037253.1supercontigKK037253.1:259570..259684 +
KK037253.1supercontigKK037253.1:259934..260019 +
KK037253.1supercontigKK037253.1:260224..260250 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|585101432|gb|EWM21277.1| (caltractin [Nannochloropsis gaditana])

HSP 1 Score: 379.022 bits (972), Expect = 7.729e-133
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAPLDDIDSDDDY 191
            MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAPLDDIDSDDDY
Sbjct:    1 MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAPLDDIDSDDDY 191          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|553187750|ref|XP_005854672.1| (caltractin, partial [Nannochloropsis gaditana CCMP526] >gi|422294389|gb|EKU21689.1| caltractin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 306.605 bits (784), Expect = 1.083e-104
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMI 154
            MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMI
Sbjct:    1 MASGISSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMI 154          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|301119597|ref|XP_002907526.1| (caltractin [Phytophthora infestans T30-4] >gi|262106038|gb|EEY64090.1| caltractin [Phytophthora infestans T30-4])

HSP 1 Score: 223.016 bits (567), Expect = 3.122e-71
Identity = 113/160 (70.62%), Postives = 130/160 (81.25%), Query Frame = 0
Query:   22 RRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            R+PKP  K   LDEE+LEEI+EAF+LFD+DG G+IDVRELKAA RALGFQVKKAEIR  +  IDK+ + T+  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGENLTDEE+QEMIDEADRD DG INEEEFFRVM+KR   P
Sbjct:   21 RKPKPVKKV--LDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGENLTDEEMQEMIDEADRDGDGFINEEEFFRVMKKRSGNP 178          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|675176505|ref|XP_008897137.1| (hypothetical protein PPTG_05358 [Phytophthora parasitica INRA-310] >gi|566011264|gb|ETI34175.1| hypothetical protein F443_19253 [Phytophthora parasitica P1569] >gi|568006968|gb|ETL81213.1| hypothetical protein L917_18407 [Phytophthora parasitica] >gi|568036813|gb|ETM34415.1| hypothetical protein L914_18494 [Phytophthora parasitica] >gi|568102918|gb|ETN17589.1| hypothetical protein PPTG_05358 [Phytophthora parasitica INRA-310] >gi|570315111|gb|ETO63059.1| hypothetical protein F444_19206 [Phytophthora parasitica P1976] >gi|570938825|gb|ETP04082.1| hypothetical protein F441_19068 [Phytophthora parasitica CJ01A1] >gi|570969155|gb|ETP32274.1| hypothetical protein F442_19030 [Phytophthora parasitica P10297] >gi|970645246|gb|KUF85775.1| Caltractin [Phytophthora nicotianae])

HSP 1 Score: 222.631 bits (566), Expect = 4.429e-71
Identity = 112/160 (70.00%), Postives = 130/160 (81.25%), Query Frame = 0
Query:   22 RRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            R+PKP  K   LDEE+LEEI+EAF+LFD+DG G+IDVRELKAA RALGFQVKKAEIR  +  IDK+ + T+  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEFFRVM+KR   P
Sbjct:   19 RKPKPVKKA--LDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNP 176          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|695382217|ref|XP_009517330.1| (hypothetical protein PHYSODRAFT_476233 [Phytophthora sojae] >gi|197320676|gb|ACH68466.1| calcium-dependent protein 5 [Phytophthora sojae] >gi|348690241|gb|EGZ30055.1| hypothetical protein PHYSODRAFT_476233 [Phytophthora sojae])

HSP 1 Score: 221.861 bits (564), Expect = 7.402e-71
Identity = 112/160 (70.00%), Postives = 129/160 (80.62%), Query Frame = 0
Query:   22 RRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            R+PKP  K   LDEE+LEEI+EAF+LFD+DG GTIDVRELKAA RALGFQVKKAEIR  +  IDK+ +  +  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEFFRVM+KR   P
Sbjct:   15 RKPKPVKKA--LDEEDLEEIKEAFHLFDTDGSGTIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGAINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNP 172          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|301089016|ref|XP_002894861.1| (caltractin [Phytophthora infestans T30-4] >gi|262106675|gb|EEY64727.1| caltractin [Phytophthora infestans T30-4])

HSP 1 Score: 221.476 bits (563), Expect = 1.109e-70
Identity = 112/160 (70.00%), Postives = 129/160 (80.62%), Query Frame = 0
Query:   22 RRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            R+PKP  K   LDEE+LEEI+EAF+LFD+DG G+IDVRELKAA RALGFQVKKAEIR  +  IDK+ + T+  DEF++M   K+ +RD REEI K+F LFDDD TG ISFRNLKRV TELGENLTDEE+QEMIDEAD D DG INEEEFFRVM+KR   P
Sbjct:   15 RKPKPVKKV--LDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKIFQLFDDDNTGKISFRNLKRVCTELGENLTDEEMQEMIDEADHDGDGFINEEEFFRVMKKRSGNP 172          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|676398553|ref|XP_009042554.1| (hypothetical protein AURANDRAFT_39492 [Aureococcus anophagefferens] >gi|323446669|gb|EGB02747.1| hypothetical protein AURANDRAFT_39492 [Aureococcus anophagefferens])

HSP 1 Score: 221.476 bits (563), Expect = 1.382e-70
Identity = 125/176 (71.02%), Postives = 143/176 (81.25%), Query Frame = 0
Query:    6 SSSRFRQGAGLGSPPSRRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            S SR   G   G   SR PK      G+ EEE+EEIREAFNLFD++GKG ID++ELKAAFRALGFQVKKAEIR  +Q +DKE + TV +DEF++MA PK+ +RD REEI KVFALFDDD TGAISFRNLKRVA ELGENLTDEELQEMIDEADRD DG+INE+EFFRVM+KRG+ P
Sbjct:   11 SGSRALSGRPGGGRASRAPKRA----GVSEEEMEEIREAFNLFDTEGKGVIDIKELKAAFRALGFQVKKAEIRRMMQDVDKESSPTVLFDEFVEMATPKMQSRDTREEIMKVFALFDDDQTGAISFRNLKRVANELGENLTDEELQEMIDEADRDGDGMINEDEFFRVMKKRGDNP 182          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|567948807|gb|ETK74545.1| (hypothetical protein L915_18679 [Phytophthora parasitica] >gi|567977464|gb|ETL27966.1| hypothetical protein L916_18584 [Phytophthora parasitica])

HSP 1 Score: 220.705 bits (561), Expect = 1.939e-70
Identity = 111/160 (69.38%), Postives = 129/160 (80.62%), Query Frame = 0
Query:   22 RRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            R+PKP  K   LDEE+LEEI+EAF+LFD+DG G+IDVRELKAA RALGFQVKKAEIR  +  IDK+ + T+  DEF++M   K+ +RD REEI K+  LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEFFRVM+KR   P
Sbjct:   19 RKPKPVKKA--LDEEDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKILQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNP 176          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|1214713391|gb|OWZ24286.1| (Caltractin [Phytophthora megakarya])

HSP 1 Score: 220.32 bits (560), Expect = 3.068e-70
Identity = 111/160 (69.38%), Postives = 129/160 (80.62%), Query Frame = 0
Query:   22 RRPKPGAKGKGLDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKRGNAP 181
            R+PKP  K   LDE++LEEI+EAF+LFD+DG G+IDVRELKAA RALGFQVKKAEIR  +  IDK+ + T+  DEF++M   K+ +RD REEI K F LFDDD TG ISFRNLKRV TELGE LTDEE+QEMIDEADRD DG+INEEEFFRVM+KR   P
Sbjct:   15 RKPKPVKKA--LDEDDLEEIKEAFHLFDTDGSGSIDVRELKAAMRALGFQVKKAEIRQMIADIDKDESGTINLDEFIEMMTGKMNSRDSREEIMKTFQLFDDDNTGKISFRNLKRVCTELGETLTDEEMQEMIDEADRDGDGLINEEEFFRVMKKRSGNP 172          
BLAST of EWM21277.1 vs. NCBI_GenBank
Match: gi|299116056|emb|CBN74472.1| (putative: similar to centrin [Ectocarpus siliculosus])

HSP 1 Score: 219.935 bits (559), Expect = 3.903e-70
Identity = 107/145 (73.79%), Postives = 129/145 (88.97%), Query Frame = 0
Query:   33 LDEEELEEIREAFNLFDSDGKGTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIDEADRDQDGVINEEEFFRVMRKR 177
            LDEE +EEI+EAF+LFD++GKG ID+RELKAAFRALGFQVKK EIR  L  +DKE AA+V++++F++M  PKV  RD ++EI K+FALFD+DGTG ISFRNLKRVATELGENLTD+ELQEMIDEADRDQDGV+N +EF+RVMRKR
Sbjct:   25 LDEESMEEIKEAFSLFDTEGKGAIDIRELKAAFRALGFQVKKQEIRGMLTDVDKEGAASVSFNDFVEMVTPKVLARDPKDEIMKIFALFDEDGTGGISFRNLKRVATELGENLTDDELQEMIDEADRDQDGVVNADEFYRVMRKR 169          
The following BLAST results are available for this feature:
BLAST of EWM21277.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101432|gb|EWM21277.1|7.729e-133100.00caltractin [Nannochloropsis gaditana][more]
gi|553187750|ref|XP_005854672.1|1.083e-104100.00caltractin, partial [Nannochloropsis gaditana CCMP... [more]
gi|301119597|ref|XP_002907526.1|3.122e-7170.63caltractin [Phytophthora infestans T30-4] >gi|2621... [more]
gi|675176505|ref|XP_008897137.1|4.429e-7170.00hypothetical protein PPTG_05358 [Phytophthora para... [more]
gi|695382217|ref|XP_009517330.1|7.402e-7170.00hypothetical protein PHYSODRAFT_476233 [Phytophtho... [more]
gi|301089016|ref|XP_002894861.1|1.109e-7070.00caltractin [Phytophthora infestans T30-4] >gi|2621... [more]
gi|676398553|ref|XP_009042554.1|1.382e-7071.02hypothetical protein AURANDRAFT_39492 [Aureococcus... [more]
gi|567948807|gb|ETK74545.1|1.939e-7069.38hypothetical protein L915_18679 [Phytophthora para... [more]
gi|1214713391|gb|OWZ24286.1|3.068e-7069.38Caltractin [Phytophthora megakarya][more]
gi|299116056|emb|CBN74472.1|3.903e-7073.79putative: similar to centrin [Ectocarpus siliculos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9428rna9428Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications