rna9423, rna9423 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9423
Unique Name	rna9423
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3365
Alignment location	KK037253.1:236134..238429 +

Link to JBrowse

Properties


Property Name	Value
Product	fatty-acyl
Orig transcript id	gnl\|cribi\|Naga_100608g3.5756.mrna
Orig protein id	gnl\|cribi\|Naga_100608g3.5756
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:236134..238429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100608g3	gene9144	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9423	rna9423-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21280.1	cds9393	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:236134..238429+
coding sequence from alignment at KK037253.1:236134..238429+

mRNA sequence

>rna9423 ID=rna9423|Name=rna9423|organism=Nannochloropsis gaditana|type=mRNA|length=3365bp
CGCAATCATTCTTAATTTGCGTGCCCGCACGTAGCATTCAACTATGTCCC
GGGCATGAGATTGCTCCGACAGGCCATTTGTCACATTATTCTTGCAGCGG
CCCCCAAAGGAGACACCGCGGCCGACGGTCACTTTATTTTTGGTTTTTAA
TTTCATCTTCAAGTCCGAACTTGAAGCCAGCCTCAAGAGTCACCGATTGA
TTTTGAAGACGTTGCCGCACGCACAAAGGCAATTTGGACGGCGGAAACCT
CCGGACACGTTCAACCTGCACATAGGTAGTGTGCCGATGCAATTTAATCA
TCATATTTACCATGTGTTTTGTGCAGTGCCGGCTTTCGGCATGGATTTTA
GTGGGTGGCGGAGATGGCTTGGCTGGCCTCTGTTGAAAGGAGCGGAAACC
AAGGCAAAGGAAGAGAAGCCTTGTCCCGGCCAGGATGACTGGCAGACATA
TCCCTTTTTCATCCCACGCTCACCGTGTTGCCTGGACGAATATGCTACAT
GCGCATGTGTGTGTGCGGCGGTGCGTCATGGAGTCTTTGTGGTAAAACGT
GCCTCTCATTCCGGCACCCATGGCAATCGCATGGACGTGCTAGGGGGGCG
CGGTGACGTTGACTTGTATGCTTCTAGACATCCTGGTAATAGTTTTTTTA
ACCACAGTCATAATTAACTCTCTCCTTTCTCATTTTGGATCGATTTCAAG
GCTCCGTGCGCAGGCATTTGCATATTCAGACCTGCAACGGATGACATAAT
AAGCAGCTGGAGGACATTGGAACCGAGCGAAACGGCTTAATTTACGCATC
AAAAACAACTTCTTCGCACAAAAGCGGTGATCAAAGGTGACATTCTTCTG
GACATAGCATCAAGACTTGCGTCGCGCGCTTGGATTGAATGGGTGCTTAT
CTTTCGGCGCCCGTGACGGAAAAAGAGTCTCAAGACGGGGAGAATCCGCG
TCCCAATGGCTTGCGTTTCGGGGTTACGGCCATGCAAGGATGGCGGGTGA
AGATGGAAGATGCCCACCTGGCTCGAGTTTGCCTGGAGGAGGAGGAGGAA
GAGGAGGAGGAGGGGCAAGTGGACGGGAATGGGAGGGAAGAGAAAGGGGA
GCGGGTGATGAAGGAGGGGGAGAAGGAGAGGAAAGGCCCGACGGCCCTGT
TTGGGGTCTTCGACGGGCATGGGGGGTCGGAGGTGGCGAATTATTGCGCG
AAGCACATGGAGCACGTCTTAGTCACGTCCCAGGCGTGGAAAGGAGGGAA
GCGGGAGGAAGGGAAGGGAGGGAGGGACATCCAAGGGGCTTTGAAGGAGG
CTTTTTTACGGCTGGACGGCATGCTGGCGGGGAAGGAAGGGCAGGAGGAG
CTGCAGGAGATGTTGCGGGAGGAGCGGGAAGGGGGGAAGAGGCCGGAGCC
GGAGGTGAGCCTAGAGGAGGTAGCGGTACAGACGGGATTGTCGGTGGGGT
CCATCCGGGCCTACGTCAAGGAAGCGTGGAGGAGGGGACAGGCGGGGGAC
GAAGAGGAGGGCGGGGAGGAGGGGGGGGAGGGGGGGAGGGAGGAGGAAGA
AGGGGAGCAGGAAGGCCGGGGCGGGGAGGAGGAGGTAGACGAGGAGGAGG
AGGTCGAAGAAGGGGTGGTTGTAGTCGAAGAGGAGGAAGAAGGGGGGGTG
GCCCTATCGAATGAGGAGGGGATGGAGGAGCAGGGAGAGGAAGAGAAGCG
GGCATCGCCCGCGGTGGGGGCGGCAGGGAGGAAAAAGCGTCGGAGGGGGG
AAGAAGGAGGGGAAGTCATGGAAGCAGGGATGTGTGTGGAGGAATGTGCG
TCGATCGGGGGTAGCAAGGGGGGAGAGGAGGTATTTGACCTGGCTGGAGG
GATGAGGAGTAAGAAGCGAGCGGCAGAGGGGTCCTCAGGCCCTCCCCCTG
AGACAGCCAAAGTGGCGAACGCCTCCGTCACGGCCTCATACGGCGAAAGT
AGCACGAGTAGCAGCAGCAGTTTAGAGACGGCGGCCCTGCTGAAAGAGGA
GGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAAGGGGAGATGATGCTGGAGGAGGAAGCG
ATCCGCAGCATTAACTTTCACCGGATGAAAGATTTGGTACTTCGACAACG
TCCAGGTTATGATTCGGGCTGCACGGCCGTGGTGGTGGTCTACGAGGAAG
GGAAGGAGGGCGGGAGGATGGGCGGGCGGTTGGTGGTGGCCAACGCGGGG
GATTCCCGGTGCGTGTTGAGTCGCCAGGGGAGAGCCGTGGACCTGTCTTG
CGACCACAAGCCGGAAAATGCCGAGGAAAAGGCACGCATCGAAGAGGCGG
GGGGAAGCGTGTCGGAAGACGGGCGGGTGGAAGGGAATTTGAATTTGTCC
CGGGCCATTGGGGACTTGACCTACAAACAACATGCAGGCCTCCCCGCCGA
GAAGCAAATGATCAGCGCCGACCCGGATGTACGGGTTGAAAGCGTGCGCA
GGGGGGAGGACGAATTTTTCGTGCTGGCATGCGATGGTATTTGGAATGTG
TTGAGCAGTCAGGAGGTGGTGGACATGGTGCGGAAGGGCCTCCGGGAAGG
CGGGGAAGAGGGGCGACTCTCCGCCGTATGCGAGGCGGTTTGCGACCGGT
GTTGCGACAAGGAGATGGGCGGGGACAGCGACGGCGTGGGCTGCGACAAC
ATGACTATGATGGTGGTCTTGTTGCCCGGGTGGAAGGGGTGAAGGGAAGG
GAGGAGAGGGAGGAGGAGAAGGAAGCGGGGTGGTGACGAGGTAATCAGCC
GCTGGGCGGGCACGAAGTGGGCCAAAAGGGGCGCCGTGACTGAGGGGGGA
GGAGTGCTGGGATGGGGAAGAAGGATGGGATGGGAAGGCGGAGTGAAGGC
AGGTCGGGCGAAAGAAAAAGACGGGGACGAGACGTGCAGGCGCTGGGGGG
GCATGCCGAAATTGAGGGGAGAGACCGTCTTGGGTTGGATATGAATGCCT
GAATACAGGAAAAAGCATGGTGAAAAATGCTCTGACAATGTTTGTATGAT
AAATAAATTGGACAAGACGGAGGCTTGATCGTACGAGTAGTTCGTGTACG
CCATGTGTAAAGGCCCGGGGAGCATGGGTCCGTGATGAAAAGTCTTGGAA
TGGACAGAAAAGCAAACGCAAGAGAAAAATATGGACTGTGTACCGGCATT
CCCATAAAAGAATATATGAATGGACAGGAAAGCAAACGCAACAGAAAGAT
ATGGACTGTATCCCTGATTCCCAAGTCAGAATGTACCCACAGTCCTCCTT
TCAAGTTGTATTGGGTAGCTGTGATGCGCCTTTGCCATCCACTCGTTGAA
ATACAGATTATTTCC

protein sequence of rna9423

>rna9423-protein ID=rna9423-protein|Name=rna9423|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPF
VNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLS
LFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFS
KIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAM
NYSVHAI

mRNA from alignment at KK037253.1:236134..238429+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9423 ID=rna9423|Name=rna9423|organism=Nannochloropsis gaditana|type=mRNA|length=2296bp|location=Sequence derived from alignment at KK037253.1:236134..238429+ (Nannochloropsis gaditana)
CGTCTCTCCACATTTCGCCACCCCACCCAGGCCCGCGAGTAGCCATGGGC
CCAATTTTTCATTTTGCGCAGTCGGTCGTGCAAAGCAAATAAAATTATTT
AGAAGATCGGTTTGGTGTGGCACGGTCgcggggggaaaagggggcgaGCA
AGGCAGTGGAACGAAAAGGGGGAAGTAAAACACTCTTTGGGGAGACTTGG
AACCGGGGGCTGCATGGCATGACTGGTCGACGGTGGTGTGCTGCTTTGGA
TGGGTGCTTTGTTTGGTGCAGGGTTTATTTCGCGGTGAGATCCGCTCTTT
GGCGAGACGGCgcgacagagggagggatttcCAGACCTCACGTAGGAAGT
GGGTGTCAAGGTCGTTGACAGCCCCCCTTCACGTCATTGGTTGTAAAACA
CTTGCACCTGAGAAAGATTGTGCAACTGCCTACATTTGTGGCCTTATTTT
GAGCCTttgtgcctcctcccttgagAAAAAAGTTTGAaattcttcccttt
tttctgtGGAAGCACGAGACGAAAAGCAGCTATTTCGTCGTCAAGAAGCA
TCTCGCAAACACACAAATATCACACCACAGTCATAAAGATTAAGTGCGCG
TCACGATAATTTTTATATCCTTGTCAAGTGGTCGCACTGCCTGGTTTTTG
GGGAAGAAATTTTGCAGTCCGCGTTGCCGTCTCTCCCACGTCGGAACACG
ACGATACCGACGGACTCGCACTTTCTACCTACAATGCATTGCTCGTTACC
AATTCATGGGGAGCATGCGCGACGACCTGCGTTGTTCAATGGAATGTGTC
GCCTACGTTGTCTGTTCTGATGCGTGTAAAGGGGGTTTACGTGATGGGTC
GCCAGGGAGGCTTGTTggtgcttcctccctccgtcttccatGTTCTCCTT
AGCTTGCAAGATGCCCGATCCAGGGTTTAACCGAGACGAGAATATGGGCA
CCGAGTGCCGTCGTGGCGTGTGTCACACAGACGTGTGCGTGCAGGATGAC
GAAACGTGGTCATTGTTAGAGATGCCCTTCGCGCACCCGGAGCCAGAGGG
CGGAGCCCCTCTTCCGTAGCCTTCACGGCAACGCGGCAGTTGGGAAGGTT
GAAGGGTTTTTGTCAGACGCCCGCTTGGGTCTCAGGAACATGGCCATGAC
CTATAGCTACTCACCGATATCTCGAAATTTTTCTCCCTGTATGGGGCACC
ACAGAGCCGCTTGACCGCACCCCCCGTCTGTCACTCTCGCAGCatgtcct
tcctcatccgcACGCCGGCGGACCAGATCAAGCCGTACTTCTCGGAGGTA
GGCTTTAAGGGTGTCAAAATttggcgtggaggaaagaagtcGCAGTCGTC
AAGGTTGCACATGGTCACTCTGACATCCCTCCTTTGGTCCCCTCCGGGTA
TCCGCCCTCTGTATCTTTCACGCCCACAGGCGGCGCAAACGCACTACACC
CAACTCTTCCAACACTTTCCCATCCTGGAACGGACCTATTTCCCTTTCGA
GAAGAACTTCCACGCCGAGCCTTTCGTCAACTTCGCCAAGGCGACCtggc
ccgccctccccctcgctctctgcACGCTCTACGCGCTCATGATCGTGGTG
GGCTCGCGGGTGATGAAGAACAGGTTTGTTTTGGAAATGTTGAGGGAGgt
atgggaaggagggggaaggaagacgggggcgggcaagCGCCGCCGTTGGA
GATGGACAGACCCTGGACGCCCACctattcctccccctctccttccctcc
ctccgtccttccccttcctttccccctcccttcgtcccttccctgcctca
gAGAGCGTTTCGACTGGCGTGGACCGCTGGCGTACTGGAACCtgtgcctc
tccctcttctccttttgcgGCATGCTCCGCACCGTGCCACACCTGTTGAA
CAACATCACGACGTTGAGCTTCCGAGAGACCGTGTGCACTTCCGCTGCCA
AGGCCTACGGCGAAGGAGCCTGTGGCCTCTGGGTCATGCTCTTCATTTTC
AGCAAGATTCCCGAGCTGGTGGACACCGTTTTCATCGTTTTCCGCAAGAG
CAAGCTTCAGgtacccccccctccctccctccctcccgccttccccctcc
acccgtcgacccccctcctctcccctccctctcaccgtcatttccccccc
tctctctcatgTGCACGCCCTTGTACTTCAGTTCCTCCACTGGTACCACC
ACatcaccgtcctcctcttctgctgGCACTCCTACGCCACCGAGTCCTCC
ACGGGCCTATACTTCGTGGCCATGAACTACTCGGTCCACGCCATTA

Coding sequence (CDS) from alignment at KK037253.1:236134..238429+

>rna9423 ID=rna9423|Name=rna9423|organism=Nannochloropsis gaditana|type=CDS|length=2488bp|location=Sequence derived from alignment at KK037253.1:236134..238429+ (Nannochloropsis gaditana)
atgtccttcctcatccgcACGCCGGCGGACCAGATCAAGCCGTACTTCTC
GGAGGCGGCGCAAACGCACTACACCCAACTCTTCCAACACTTTCCCATCC
TGGAACGGACCTATTTCCCTTTCGAGAAGAACTTCCACGCCGAGCCTTTC
GTCAACTTCGCCAAGGCGACCtggcccgccctccccctcgctctctgcAC
GCTCTACGCGCTCATGATCGTGGTGGGCTCGCGGGTGATGAAGAACAGAG
AGCGTTTCGACTGGCGTGGACCGCTGGCGTACTGGAACCtgtgcctctcc
ctcttctccttttgcgGCATGCTCCGCACCGTGCCACACCTGTTGAACAA
CATCACGACGTTGAGCTTCCGAGAGACCGTGTGCACTTCCGCTGCCAAGG
CCTACGGCGAAGGAGCCTGTGGCCTCTGGGTCATGCTCTTCATTTTCAGC
AAGATTCCCGAGCTGGTGGACACCGTTTTCATCGTTTTCCGCAAGAGCAA
GCTTCAGTTCCTCCACTGGTACCACCACatcaccgtcctcctcttctgct
gGCACTCCTACGCCACCGAGTCCTCCACGGGCCTATACTTCGTGGCCATG
AACTACTCGGTCCACGCCATTAatgtccttcctcatccgcACGCCGGCGG
ACCAGATCAAGCCGTACTTCTCGGAGGCGGCGCAAACGCACTACACCCAA
CTCTTCCAACACTTTCCCATCCTGGAACGGACCTATTTCCCTTTCGAGAA
GAACTTCCACGCCGAGCCTTTCGTCAACTTCGCCAAGGCGACCtggcccg
ccctccccctcgctctctgcACGCTCTACGCGCTCATGATCGTGGTGGGC
TCGCGGGTGATGAAGAACAGAGAGCGTTTCGACTGGCGTGGACCGCTGGC
GTACTGGAACCtgtgcctctccctcttctccttttgcgGCATGCTCCGCA
CCGTGCCACACCTGTTGAACAACATCACGACGTTGAGCTTCCGAGAGACC
GTGTGCACTTCCGCTGCCAAGGCCTACGGCGAAGGAGCCTGTGGCCTCTG
GGTCATGCTCTTCATTTTCAGCAAGATTCCCGAGCTGGTGGACACCGTTT
TCATCGTTTTCCGCAAGAGCAAGCTTCAGTTCCTCCACTGGTACCACCAC
atcaccgtcctcctcttctgctgGCACTCCTACGCCACCGAGTCCTCCAC
GGGCCTATACTTCGTGGCCATGAACTACTCGGTCCACGCCATTAatgtcc
ttcctcatccgcACGCCGGCGGACCAGATCAAGCCGTACTTCTCGGAGGC
GGCGCAAACGCACTACACCCAACTCTTCCAACACTTTCCCATCCTGGAAC
GGACCTATTTCCCTTTCGAGAAGAACTTCCACGCCGAGCCTTTCGTCAAC
TTCGCCAAGGCGACCtggcccgccctccccctcgctctctgcACGCTCTA
CGCGCTCATGATCGTGGTGGGCTCGCGGGTGATGAAGAACAGAGAGCGTT
TCGACTGGCGTGGACCGCTGGCGTACTGGAACCtgtgcctctccctcttc
tccttttgcgGCATGCTCCGCACCGTGCCACACCTGTTGAACAACATCAC
GACGTTGAGCTTCCGAGAGACCGTGTGCACTTCCGCTGCCAAGGCCTACG
GCGAAGGAGCCTGTGGCCTCTGGGTCATGCTCTTCATTTTCAGCAAGATT
CCCGAGCTGGTGGACACCGTTTTCATCGTTTTCCGCAAGAGCAAGCTTCA
GTTCCTCCACTGGTACCACCACatcaccgtcctcctcttctgctgGCACT
CCTACGCCACCGAGTCCTCCACGGGCCTATACTTCGTGGCCATGAACTAC
TCGGTCCACGCCATTAatgtccttcctcatccgcACGCCGGCGGACCAGA
TCAAGCCGTACTTCTCGGAGGCGGCGCAAACGCACTACACCCAACTCTTC
CAACACTTTCCCATCCTGGAACGGACCTATTTCCCTTTCGAGAAGAACTT
CCACGCCGAGCCTTTCGTCAACTTCGCCAAGGCGACCtggcccgccctcc
ccctcgctctctgcACGCTCTACGCGCTCATGATCGTGGTGGGCTCGCGG
GTGATGAAGAACAGAGAGCGTTTCGACTGGCGTGGACCGCTGGCGTACTG
GAACCtgtgcctctccctcttctccttttgcgGCATGCTCCGCACCGTGC
CACACCTGTTGAACAACATCACGACGTTGAGCTTCCGAGAGACCGTGTGC
ACTTCCGCTGCCAAGGCCTACGGCGAAGGAGCCTGTGGCCTCTGGGTCAT
GCTCTTCATTTTCAGCAAGATTCCCGAGCTGGTGGACACCGTTTTCATCG
TTTTCCGCAAGAGCAAGCTTCAGTTCCTCCACTGGTACCACCACatcacc
gtcctcctcttctgctgGCACTCCTACGCCACCGAGTCCTCCACGGGCCT
ATACTTCGTGGCCATGAACTACTCGGTCCACGCCATTA

Synonyms

Publications