EWM21280.1, cds9393 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|585101438|gb|EWM21280.1| (fatty-acyl, partial [Nannochloropsis gaditana]) HSP 1 Score: 431.795 bits (1109), Expect = 3.304e-153 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query: 1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI
Sbjct: 1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|310751969|gb|ADP09412.1| (elongase [Nannochloropsis oculata]) HSP 1 Score: 340.117 bits (871), Expect = 1.696e-117 Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 0
Query: 1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHW 173
MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILER YFPFEKNF AEPFV+FAKATWP LPLALCT YALMIV+G+RVMKNRE+FDWRGPLAYWNL LSLFSFCGMLRTVPHLLNNITTLSFR+TVCTSAAK+YGEG GLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHW
Sbjct: 1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERAYFPFEKNFRAEPFVDFAKATWPLLPLALCTAYALMIVIGTRVMKNREKFDWRGPLAYWNLTLSLFSFCGMLRTVPHLLNNITTLSFRDTVCTSAAKSYGEGVSGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHW 173
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|553192576|ref|XP_005855601.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422293464|gb|EKU20764.1| fatty-acyl [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 305.449 bits (781), Expect = 1.383e-101 Identity = 144/206 (69.90%), Postives = 168/206 (81.55%), Query Frame = 0
Query: 2 SFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
S LI +I PY S +TQLFQH+P+L Y +EKNFHA +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+ LA WNL LS+FSFCGMLRTVPHLL N+TTL F++T+C A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA SSTGLYFVAMNYSVHA+
Sbjct: 9 SKLIWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAV 214
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|585111978|gb|EWM29442.1| (fatty-acyl [Nannochloropsis gaditana]) HSP 1 Score: 303.908 bits (777), Expect = 2.465e-100 Identity = 141/197 (71.57%), Postives = 166/197 (84.26%), Query Frame = 0
Query: 11 QIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
+I PY S +TQLFQH+P+L Y +EKNFHA +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+ LA WNL LS+FSFCGMLRTVPHLL+N+TTL F++T+C A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA SSTGLYFVAMNYSVHA+
Sbjct: 18 KIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAV 214
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|256750562|gb|ACV21066.1| (fatty acid elongase [Nannochloropsis oculata]) HSP 1 Score: 300.827 bits (769), Expect = 1.001e-99 Identity = 137/203 (67.49%), Postives = 167/203 (82.27%), Query Frame = 0
Query: 5 IRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
++ +I PY S + +TQLFQH+P+L+ Y +EKNF+A +V FA+ TWP LPLALC +YALMI+VG++VM +R + +W+ LA WNL LS+FSFCGM+RTVPHLL+N+ TL F++T+C A+ YGEGACG+WVMLFIFSK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA SSTGLYFVAMNYSVHAI
Sbjct: 14 LKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAI 216
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|553184970|ref|XP_005854181.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422294882|gb|EKU22182.1| fatty-acyl [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 230.72 bits (587), Expect = 7.556e-73 Identity = 109/168 (64.88%), Postives = 132/168 (78.57%), Query Frame = 0
Query: 2 SFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQ 169
S LI +I PY S +TQLFQH+P+L Y +EKNFHA +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+ LA WNL LS+FSFCGMLRTVPHLL N+TTL F++T+C A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQ
Sbjct: 9 SKLIWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQ 176
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|1210521613|dbj|GAX19603.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 203.756 bits (517), Expect = 4.781e-62 Identity = 97/176 (55.11%), Postives = 119/176 (67.61%), Query Frame = 0
Query: 31 FPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHA 206
+P +E Y FEK + P +N+ K P +P+A C +YA+ I G R+R++WR LA WNL LS+FSF GMLRT PHL +N+T LSFR+ +C YG G+ GLWV LFI SK PEL+DT FIV K L FLHWYHHITVLL+CWHSY T S TG+ F AMNY+VHA
Sbjct: 23 YPQVEHLYTSFEKFYDPIPLLNWMKGQ-PGIPVAACIIYAVSIYYGQAYFAKRDRWNWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHA 197
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|1210531746|dbj|GAX09713.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 197.593 bits (501), Expect = 8.707e-60 Identity = 94/166 (56.63%), Postives = 114/166 (68.67%), Query Frame = 0
Query: 41 FEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHA 206
FEK + P +N+ K P +P+A C +YA+ I G R+R++WR LA WNL LS+FSF GMLRT PHL +N+T LSFR+ +C YG G+ GLWV LFI SK PEL+DT FIV K L FLHWYHHITVLL+CWHSY T S TG+ F AMNY+VHA
Sbjct: 25 FEKFYDPIPLLNWMKGQ-PGIPVAACIIYAVSIYYGQAYFAKRDRWNWRYTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHA 189
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|224008873|ref|XP_002293395.1| (long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335] >gi|220970795|gb|EED89131.1| long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 196.823 bits (499), Expect = 3.267e-59 Identity = 102/210 (48.57%), Postives = 128/210 (60.95%), Query Frame = 0
Query: 2 SFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATW----PALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
FL P + + + HY + P+L TY PFE+ + +P A TW P +P+ C Y ++IV+G MK+R + WR LA WNL LSLFS+ G +RT P L N+TT S R+ +C A YG G+ GLWV LFI SK PEL+DT FIV K L FLHWYHHITVLL+CWHSY T S +GL+FV MNYSVHA+
Sbjct: 3 QFLTSIPKECVG---TNGLGVHYAEFSCLHPLLGATYLPFERFY--DPV---ATLTWMQDRPMIPIIACVAYVVLIVLGRAYMKDRPAWSWRRILAVWNLSLSLFSWIGAIRTAPQLYYNLTTYSLRDNLCDDPAALYGSGSTGLWVQLFILSKFPELLDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPSGLFFVVMNYSVHAV 204
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|401405661|ref|XP_003882280.1| (GNS1/SUR4 domain containing protein, related [Neospora caninum Liverpool] >gi|325116695|emb|CBZ52248.1| GNS1/SUR4 domain containing protein, related [Neospora caninum Liverpool] >gi|820690471|tpe|CEL66216.1| TPA: GNS1/SUR4 domain containing protein, related [Neospora caninum Liverpool]) HSP 1 Score: 190.66 bits (483), Expect = 1.588e-56 Identity = 97/204 (47.55%), Postives = 125/204 (61.27%), Query Frame = 0
Query: 4 LIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
L R P ++ Y ++AA L + +P L Y FE + A P++ + A + P+A+ T+Y L G+R MKNR +D R PL YWNL L++FSF GM+R VPHL + F ++C+ YG G CGLW+ LFI+SK EL+DTVFIV RK L FLHWYHH TVLL+ W Y E G+YFVAMNYSVHAI
Sbjct: 11 LDRRPPGELSTYPNKAA----LNLNEEYPFLRPLYSDFEAEYRAIPWLRWTVARYHVAPIAV-TIYLLFCYFGTRWMKNRPAYDLRRPLKYWNLFLAIFSFMGMIRVVPHLFEILRRWGFEVSICSPPVYTYGHGGCGLWIFLFIYSKYFELLDTVFIVLRKRPLNFLHWYHHATVLLYTWDGYCVEQPAGIYFVAMNYSVHAI 209 The following BLAST results are available for this feature:
BLAST of EWM21280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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