EWM21280.1, cds9393 (CDS) Nannochloropsis gaditana

Overview
NameEWM21280.1
Unique Namecds9393
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:237377..237430 +
Alignment locationKK037253.1:237563..237756 +
Alignment locationKK037253.1:237935..238193 +
Alignment locationKK037253.1:238315..238429 +

Link to JBrowse

Properties
Property NameValue
End range.
End range238429
Protein idEWM21280.1
Productfatty-acyl
Partialtrue
Orig transcript idgnl|cribi|Naga_100608g3.5756.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:237377..237430 +
KK037253.1supercontigKK037253.1:237563..237756 +
KK037253.1supercontigKK037253.1:237935..238193 +
KK037253.1supercontigKK037253.1:238315..238429 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR002076ELO_fam
Homology
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|585101438|gb|EWM21280.1| (fatty-acyl, partial [Nannochloropsis gaditana])

HSP 1 Score: 431.795 bits (1109), Expect = 3.304e-153
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
            MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI
Sbjct:    1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|310751969|gb|ADP09412.1| (elongase [Nannochloropsis oculata])

HSP 1 Score: 340.117 bits (871), Expect = 1.696e-117
Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 0
Query:    1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHW 173
            MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILER YFPFEKNF AEPFV+FAKATWP LPLALCT YALMIV+G+RVMKNRE+FDWRGPLAYWNL LSLFSFCGMLRTVPHLLNNITTLSFR+TVCTSAAK+YGEG  GLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHW
Sbjct:    1 MSFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERAYFPFEKNFRAEPFVDFAKATWPLLPLALCTAYALMIVIGTRVMKNREKFDWRGPLAYWNLTLSLFSFCGMLRTVPHLLNNITTLSFRDTVCTSAAKSYGEGVSGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHW 173          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|553192576|ref|XP_005855601.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422293464|gb|EKU20764.1| fatty-acyl [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 305.449 bits (781), Expect = 1.383e-101
Identity = 144/206 (69.90%), Postives = 168/206 (81.55%), Query Frame = 0
Query:    2 SFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
            S LI     +I PY S      +TQLFQH+P+L   Y  +EKNFHA  +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+  LA WNL LS+FSFCGMLRTVPHLL N+TTL F++T+C   A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA  SSTGLYFVAMNYSVHA+
Sbjct:    9 SKLIWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAV 214          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|585111978|gb|EWM29442.1| (fatty-acyl [Nannochloropsis gaditana])

HSP 1 Score: 303.908 bits (777), Expect = 2.465e-100
Identity = 141/197 (71.57%), Postives = 166/197 (84.26%), Query Frame = 0
Query:   11 QIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
            +I PY S      +TQLFQH+P+L   Y  +EKNFHA  +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+  LA WNL LS+FSFCGMLRTVPHLL+N+TTL F++T+C   A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA  SSTGLYFVAMNYSVHA+
Sbjct:   18 KIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAV 214          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|256750562|gb|ACV21066.1| (fatty acid elongase [Nannochloropsis oculata])

HSP 1 Score: 300.827 bits (769), Expect = 1.001e-99
Identity = 137/203 (67.49%), Postives = 167/203 (82.27%), Query Frame = 0
Query:    5 IRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
            ++    +I PY S   +  +TQLFQH+P+L+  Y  +EKNF+A  +V FA+ TWP LPLALC +YALMI+VG++VM +R + +W+  LA WNL LS+FSFCGM+RTVPHLL+N+ TL F++T+C   A+ YGEGACG+WVMLFIFSK+PELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYA  SSTGLYFVAMNYSVHAI
Sbjct:   14 LKADPSKIVPYKSIPDKVPFTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAI 216          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|553184970|ref|XP_005854181.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422294882|gb|EKU22182.1| fatty-acyl [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 230.72 bits (587), Expect = 7.556e-73
Identity = 109/168 (64.88%), Postives = 132/168 (78.57%), Query Frame = 0
Query:    2 SFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQ 169
            S LI     +I PY S      +TQLFQH+P+L   Y  +EKNFHA  +VNFA+ TWPALPLALC +Y LMIVVG++VM++R + +W+  LA WNL LS+FSFCGMLRTVPHLL N+TTL F++T+C   A+ YGEGACGLWVMLFI+SK+PELVDTVFIVFRKSKLQ
Sbjct:    9 SKLIWGEMPKIIPYRSVPDNVPFTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQ 176          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|1210521613|dbj|GAX19603.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris])

HSP 1 Score: 203.756 bits (517), Expect = 4.781e-62
Identity = 97/176 (55.11%), Postives = 119/176 (67.61%), Query Frame = 0
Query:   31 FPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHA 206
            +P +E  Y  FEK +   P +N+ K   P +P+A C +YA+ I  G      R+R++WR  LA WNL LS+FSF GMLRT PHL +N+T LSFR+ +C      YG G+ GLWV LFI SK PEL+DT FIV  K  L FLHWYHHITVLL+CWHSY T S TG+ F AMNY+VHA
Sbjct:   23 YPQVEHLYTSFEKFYDPIPLLNWMKGQ-PGIPVAACIIYAVSIYYGQAYFAKRDRWNWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHA 197          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|1210531746|dbj|GAX09713.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris])

HSP 1 Score: 197.593 bits (501), Expect = 8.707e-60
Identity = 94/166 (56.63%), Postives = 114/166 (68.67%), Query Frame = 0
Query:   41 FEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHA 206
            FEK +   P +N+ K   P +P+A C +YA+ I  G      R+R++WR  LA WNL LS+FSF GMLRT PHL +N+T LSFR+ +C      YG G+ GLWV LFI SK PEL+DT FIV  K  L FLHWYHHITVLL+CWHSY T S TG+ F AMNY+VHA
Sbjct:   25 FEKFYDPIPLLNWMKGQ-PGIPVAACIIYAVSIYYGQAYFAKRDRWNWRYTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHA 189          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|224008873|ref|XP_002293395.1| (long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335] >gi|220970795|gb|EED89131.1| long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 196.823 bits (499), Expect = 3.267e-59
Identity = 102/210 (48.57%), Postives = 128/210 (60.95%), Query Frame = 0
Query:    2 SFLIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATW----PALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
             FL   P + +    +     HY +     P+L  TY PFE+ +  +P    A  TW    P +P+  C  Y ++IV+G   MK+R  + WR  LA WNL LSLFS+ G +RT P L  N+TT S R+ +C   A  YG G+ GLWV LFI SK PEL+DT FIV  K  L FLHWYHHITVLL+CWHSY T S +GL+FV MNYSVHA+
Sbjct:    3 QFLTSIPKECVG---TNGLGVHYAEFSCLHPLLGATYLPFERFY--DPV---ATLTWMQDRPMIPIIACVAYVVLIVLGRAYMKDRPAWSWRRILAVWNLSLSLFSWIGAIRTAPQLYYNLTTYSLRDNLCDDPAALYGSGSTGLWVQLFILSKFPELLDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPSGLFFVVMNYSVHAV 204          
BLAST of EWM21280.1 vs. NCBI_GenBank
Match: gi|401405661|ref|XP_003882280.1| (GNS1/SUR4 domain containing protein, related [Neospora caninum Liverpool] >gi|325116695|emb|CBZ52248.1| GNS1/SUR4 domain containing protein, related [Neospora caninum Liverpool] >gi|820690471|tpe|CEL66216.1| TPA: GNS1/SUR4 domain containing protein, related [Neospora caninum Liverpool])

HSP 1 Score: 190.66 bits (483), Expect = 1.588e-56
Identity = 97/204 (47.55%), Postives = 125/204 (61.27%), Query Frame = 0
Query:    4 LIRTPADQIKPYFSEAAQTHYTQLFQHFPILERTYFPFEKNFHAEPFVNFAKATWPALPLALCTLYALMIVVGSRVMKNRERFDWRGPLAYWNLCLSLFSFCGMLRTVPHLLNNITTLSFRETVCTSAAKAYGEGACGLWVMLFIFSKIPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYATESSTGLYFVAMNYSVHAI 207
            L R P  ++  Y ++AA      L + +P L   Y  FE  + A P++ +  A +   P+A+ T+Y L    G+R MKNR  +D R PL YWNL L++FSF GM+R VPHL   +    F  ++C+     YG G CGLW+ LFI+SK  EL+DTVFIV RK  L FLHWYHH TVLL+ W  Y  E   G+YFVAMNYSVHAI
Sbjct:   11 LDRRPPGELSTYPNKAA----LNLNEEYPFLRPLYSDFEAEYRAIPWLRWTVARYHVAPIAV-TIYLLFCYFGTRWMKNRPAYDLRRPLKYWNLFLAIFSFMGMIRVVPHLFEILRRWGFEVSICSPPVYTYGHGGCGLWIFLFIYSKYFELLDTVFIVLRKRPLNFLHWYHHATVLLYTWDGYCVEQPAGIYFVAMNYSVHAI 209          
The following BLAST results are available for this feature:
BLAST of EWM21280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101438|gb|EWM21280.1|3.304e-153100.00fatty-acyl, partial [Nannochloropsis gaditana][more]
gi|310751969|gb|ADP09412.1|1.696e-11792.49elongase [Nannochloropsis oculata][more]
gi|553192576|ref|XP_005855601.1|1.383e-10169.90fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|... [more]
gi|585111978|gb|EWM29442.1|2.465e-10071.57fatty-acyl [Nannochloropsis gaditana][more]
gi|256750562|gb|ACV21066.1|1.001e-9967.49fatty acid elongase [Nannochloropsis oculata][more]
gi|553184970|ref|XP_005854181.1|7.556e-7364.88fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|... [more]
gi|1210521613|dbj|GAX19603.1|4.781e-6255.11elongation of very long chain fatty acids protein ... [more]
gi|1210531746|dbj|GAX09713.1|8.707e-6056.63elongation of very long chain fatty acids protein ... [more]
gi|224008873|ref|XP_002293395.1|3.267e-5948.57long chain fatty acid elongase [Thalassiosira pseu... [more]
gi|401405661|ref|XP_003882280.1|1.588e-5647.55GNS1/SUR4 domain containing protein, related [Neos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9423rna9423Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications