rna9416, rna9416 (mRNA) Nannochloropsis gaditana

Overview
Namerna9416
Unique Namerna9416
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1982
Alignment locationKK037253.1:215490..216267 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100468g1.9411.mrna
Orig protein idgnl|cribi|Naga_100468g1.9411
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:215490..216267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100468g1gene9137Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21286.1cds9386Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9416rna9416-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9416 ID=rna9416|Name=rna9416|organism=Nannochloropsis gaditana|type=mRNA|length=1982bp
TGCGCTTCCATCCGCCCCCCCCCCCCACCAGCACCTTCCTTCCCGCCCCT
CGACCCGGCCCCGCGCCATTTGTTCCCGGAGGAAGAGGAGGTGGGCGGGG
GGGAGGAGGAGGTAGGACAACGGAAGGGAGGTGGGCACAAGGAAGGTTCG
GGTCCACGGACCCAGGATGCTTCCCTCCCTCGGGCTTGGGCAGGCCCCCA
GAAACTCCCTGAAGCTTCCCTCCCCTCATCCAGTCCCATCAGAGCGGGGC
GAGGAACCTCCCGGCGTCGCATACGGCCCACCCCGCTCTCGACGCTAGCT
TCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCTTTCCCCTCCAATTC
CATTCCCCAGCCCTACGCCGCTGCCTTGGTCCGAGGGAGGGGCGACGGGG
ATCTGACCCGAGAGCCCAGCGCCCCCCCCCTCTCCCGCCCTCCCCCGCGA
ACTGCCCGCCTCCTTCCTCCTCCCCCTTCACCGTCCATCAACTCCTTTTC
TTCCCCGCCCATCGCCCCCCGCCACGACACCTTGAGTGCCGACAAATTTC
CCGCCCCGGCCGCCTCCTCCTCCCCTTTCCTCACTCCCGTCAAGGCCCCC
GATCCCGTCCCGCCTTCGCACCTCCTTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCCTCCCATCCA
CCCTTACCTTCTCCTTACCTCCCTCCTGCTCTCTCCCCGGCAGCGCCGCA
GGGACCAGCCCCTCCCTCCCCCTCGCCCTCCCTCCTTCCCTCCCTCCCCC
TTCCTCCTCTCGCCTCCTCCTCGTCGCCTCCGTCTACGCGTCGCTCCTTT
CCCTCCGCCTTGCACCTTCCTTAACCACCGAGCTCCACCTCCTCTTCCGC
CTTCTCACGGTCCATCCCGCCCTCCTCCTGCGCCCGCCCGCCCTCCCTCC
CTCCCTTCCCCCCTTCCTCACCTCGGGCCACGCCTGCAATCTCCTTGCCG
CGCATACCCTCGCCCTCCTTCCGCACCTCCTCTCCTCCCTCCCTCCTTCC
CTCCTCTCCCTCCTCCTCCACGTGCCCGCCCTCCACGACCACGTCCCTCA
CGCCCTCCCCTCCCTCACCCGTCTGCCCCACTCTTCGCACCGCCCGGGCC
CTACCTCCCTCGCCCTCCTTCCACATCACAGAGATGCGGACGGGAAGGGG
AGGAGGTGGGGGGGGGAGGTGGCCCTTCCCTTCGTGGAGGAGAAGGACGG
ACGGCAACTCTACGCCGGGAGCGGGTGGGGCCAGGAGGTTTTCAACCGTC
AAGAAACGGCTCGGGATTTGTTTTTGAATTTGTTCCGGGAGTGGGAGGAG
GTGCGGACGCGGGAGCTGGATCTGCGGGCGGTGGAGCGATGGGTCGGGAA
GGAAATGCCCCGACGGGCCCGGGAGGTGCTGACGGGTTTGGACACCTGGT
CGTTGGGTTGGTTCGCAGGCGTGTGGGTGGCGCTGCTGGTGAAGGTGGGG
GCGGGGGGGGAAGGAAGGGAAGGAGGAGGGGGCGGGCGGGAGGAGGAGGT
GCTGGCGAGGGCCTTGGGCGCCAAGGGAGGGAGGGAGGGCGGGGGCGGGG
AAGGGGGACAACCAAGAGGAGGAGGGAGGGGCGGAAGCGCCGCCACCTCC
GCATCGTGCTCCCCCTCCGAGGTCCAGAGGACCGTCCTCCCATCCTCGCT
GAAGCTCCACTTGCTCCATCGCCGACTGACGGCCCCCTCCGACACGTCCT
TCGCCTCTTTCGGGCGGGAAATTTCCCACCGGTCCCTCCCTCTCCCTCCC
TCCTCCTCCCCCTCCCCGGCCCCGCGCCGGCCTTCCCCCCGTCCCTCCCT
CCCTCCCGCCCTCCCTTCCCCACGCCCTCTGCTTTCCGGGGCCCCAACGA
GTTTTTCTACCATTTCTTGATCAGCGCGGACAGCCACGCTTTCAACGCCG
TGCTTGTGGAGGTGATAGGAGCAGCCTTGCAA
back to top

protein sequence of rna9416

>rna9416-protein ID=rna9416-protein|Name=rna9416|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MEHPVQGLASRRPRTPSFVRFPCPFNMPAQDTSPPAPARPSSPPTTPPSS
SPSSPSSPPSTLPSFHVWRQHPTSLPRALFLDNRDKASTFAFDFLNWLRD
ESALLLNARAATAAAVALAASMATAASGAKDAAIDVLPSASNPPQTRSTT
ATTRHVLGRRK
back to top

mRNA from alignment at KK037253.1:215490..216267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9416 ID=rna9416|Name=rna9416|organism=Nannochloropsis gaditana|type=mRNA|length=778bp|location=Sequence derived from alignment at KK037253.1:215490..216267- (Nannochloropsis gaditana)
GCCCACTTAAACGATGACGCCGCCGGGACCAACGAAAACGACCCGTCGGG
CAACGGATCCTCGTATCTGACTGCGTTGCGATGCTTGGCCTCACATTCTT
GCACGACAGGACGGCTTCAGACGCGAGAGTGTGCCATGGGTGGTGAGTTC
AGCCCCCGTGGTCATGTAATCAAGCCGAGGCTGCCAGTCGCCGTGAGGGA
AGGGGATGGAACATCCCGTCCAAGGCCTCGCTAGTCGCCGACCCAGGACT
CCCTCCTTCGTCCGTTTCCCCTGCCCCTTCAACATGCCCGCACAAGACAC
ATCTCCACCTGCACCAGCACGGCCTTCGTCCCCCCCGACCACTCCCCCGT
CCTCCTCTCCCTCCTCCCCTTCTTCCCCTCCCTCCACCCTTCCCTCCTTC
CACGTCTGGCGGCAGCATCCTACCTCCCTCCCACGGGCTCTGTTCCTTGA
CAACCGCGACAAAGCCTCCACCTTTGCCTTTGACTTCCTCAATTGGCTCC
GCGACGAATCTGCCTTGCTCCTGAATGCCCGGGCGGCGACGGCAGCAGCT
GTGGCCTTGGCCGCGTCCATGGCGACCGCTGCCTCTGGGGCGAAGGACGC
TGCCATCGACGTCCTTCCCTCCGCATCAAATCCCCCCCAGACACGGTCCA
CGACCGCAACCACCCGGCATGTGCTCGGAAGGAGGAAGTGAAAGCGCTTT
CCTCCGCACGGACCTGTATCTCGGGCGAGACCTTTACCTCCTCTACCTCC
TCCTCCTCCTCCCCCTCCTCCCCCTCCT
back to top

Coding sequence (CDS) from alignment at KK037253.1:215490..216267-

>rna9416 ID=rna9416|Name=rna9416|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at KK037253.1:215490..216267- (Nannochloropsis gaditana)
ATGGAACATCCCGTCCAAGGCCTCGCTAGTCGCCGACCCAGGACTCCCTC
CTTCGTCCGTTTCCCCTGCCCCTTCAACATGCCCGCACAAGACACATCTC
CACCTGCACCAGCACGGCCTTCGTCCCCCCCGACCACTCCCCCGTCCTCC
TCTCCCTCCTCCCCTTCTTCCCCTCCCTCCACCCTTCCCTCCTTCCACGT
CTGGCGGCAGCATCCTACCTCCCTCCCACGGGCTCTGTTCCTTGACAACC
GCGACAAAGCCTCCACCTTTGCCTTTGACTTCCTCAATTGGCTCCGCGAC
GAATCTGCCTTGCTCCTGAATGCCCGGGCGGCGACGGCAGCAGCTGTGGC
CTTGGCCGCGTCCATGGCGACCGCTGCCTCTGGGGCGAAGGACGCTGCCA
TCGACGTCCTTCCCTCCGCATCAAATCCCCCCCAGACACGGTCCACGACC
GCAACCACCCGGCATGTGCTCGGAAGGAGGAAGTGA
back to top
Synonyms
Publications