rna9415, rna9415 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9415
Unique Name	rna9415
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2070
Alignment location	KK037253.1:213360..215341 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101674g1.1602.mrna
Orig protein id	gnl\|cribi\|Naga_101674g1.1602
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:213360..215341 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101674g1	gene9136	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21288.1	cds9385	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9415	rna9415-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:213360..215341-
coding sequence from alignment at KK037253.1:213360..215341-

mRNA sequence

>rna9415 ID=rna9415|Name=rna9415|organism=Nannochloropsis gaditana|type=mRNA|length=2070bp
CCCCCTCTCCCCCCGCTACCTCCACCTGTGCGTCCGGCCCATGTACGAGC
TTGAGACGCTCCTCCGTACCTCCCTCGCCCACTCTAAATCCATCACTCGC
ACTCTGGCGCAGATCCAGCCGTTGGGAGGAGGTGAAGGAGGAGGAGGAGG
AGGAAGAGGAGGAGGCGGGAAGCTCATCACTCCCATGAAAAAGGTGCGCC
CATACCAAGTGAAGACAGCCACTGATTGGTTGCAAGGAGGGCCCAGGCAC
GAGGGGGGGAGGAGTGAGGAAGGAGGAAGGGAAGGAGGAGGAGGAGCAAG
AGGAGAAGGAAGGGGAGGGGGAGGAAGAGGGAGGGAAAGCCAAGCAGGAG
GTGGGAGTGCTCCTTTCGCTCCCTCCTCCCCCTCCTCCTTCCCTCCCTCT
CGTACTTCCTCTTCCTTCCCGCCTCCTAACTCAGTTTCACTCGCTTCGAG
CTTGCCCGTTCCTTCTCCCTCCCCTTCCTTCTCTTCCCCTCCCTCCTCCA
CTACCCCCCTCCTCCCTCCACCCTTACCTTCCCCCCTCCTCGACCAACCC
TCCCCCTCCCTGGTGGAGGCGAAGGACGAAAAGGCGCCCCTGCAGCACCG
TAGCCTCCTTCCTCATCACCTGACCCCCCTCCTTAGCTCCATGGAAGCCG
CCTTCTTTGCCCAACACCCGAACCTCCACCGTTACGCCGACCTGGCACTT
CAAGCGACCGTTAAAAATGCCCGGGCCCTCGCCCTTGCCCGCACCTCCCC
CCTCTCCTTCCTGCCTCCTCACGACCCCTCTTCTTCCTTCCCTCCTCCTC
ACGTCCTGTCCTCCCTTCGCGCCTGCTTGCGGTCTTTCTACGCCGCCCGC
CTTCCCTCCTGCTTGGACGCGATGGCCCGTCCCTCCCTCCCCCTCACCCT
CGTCCACATGGCCGCCACCTTAACTGTGCAGCATGCCCATGCGTCCGCCG
TCGACCCCATCCTCGAGGAAGTGACTTCCCTCTTCCAATCTCATCACGCC
CACACCCGGGCCCACGCCCGACGAAGCCACGAAAATGCCTTTCTTTCCCT
CTCCTCCCCTTCGCCCTCCCTCCCGTCCTCCCTCCCTCCCTCGGCCCCGC
CCTCCCTCTGGCTGCGTACGACGCAAAGGAGGCTGCAGTCGTTGCGGAGT
ATGATGGAAAGCGCCCCCTGGCTGGAAATGAGCGACCTGGTTCGGGTGTT
GAGGAAGGTGCTGGCGGTGATGGAGGAGGAAGGGGGTCTGGAGGGAGGCG
AGGACGAGGAGGAGGTGGAGGACTGGATGGTCACATCCAGCGCCCTGGTG
GCCTTGTTGGTGCGAGCGGGGGGGCGTTGCTGGGGATGAGGGAGGAGGGG
AAGGGGAAGGCGATGGGGGAGGAGGAGGAGGGGGAGGAGGAGGGAGGGTG
GAAGGAGCCGACGGAATGTGTGGGTACTGGGACGGATAGGGGATGCCTGG
GCAGGAGGAGGGGCGGGAGGAAGGGAGGGTGATGATGGGGAAGGAAGAGG
GGAAGAGGTGCTTGCTTCTCTCTGTGAGATGCTCTGGCGGTTACCTAGTC
TGTGGGCCCGGCTCATGATTGATAGGGAGGGTGCGATGGGAGGTAAAGCG
GAGGGAAGGCGACGGCGCCTGGTCCAGAGGGAGGTGAGGTTATGGATGGA
GTTAGAGGAGGAAGAGGAGGAGGGAGGAAGGGAGAGCATGGTGGTGCTGA
CGGCCAAGTTGTTGATGATGGGGTGGGAGGGAAAGAGGGAGGAGAAAAGG
AGGAGAAGAGGGGGGAACTTGGAGAAACGACAGGGGGAAGGTGCGGATGG
AGGAGGGATGAGGAAGGAGGAGGAGATGGAGGTGGAGAGGAAGGAAAATA
GGACCTCGAAGAGTCTGCCGCCGACTCGCGCCCTCCTTCCTACCTCCTCC
CCCTTCCTCCCTCCACCTCACCTCATCCCTCCCTCCTGTCCCTCCCACGT
CGCCTCCTGGTGGCTCGCCCTCGTCCGGGCGCGTGTCGTCTGCGTCCCCA
CGGTGGAAGCTGCCTGGTTGCTCCTCCTCGCCTGCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTTGCC

protein sequence of rna9415

>rna9415-protein ID=rna9415-protein|Name=rna9415|organism=Nannochloropsis gaditana|type=polypeptide|length=639bp
CASIRPPPPPAPSFPPLDPAPRHLFPEEEEVGGGEEEVGQRKGGGHKEGS
GPRTQDASLPRAWAGPQKLPEASLPSSSPIRAGRGTSRRRIRPTPLSTLA
SSSSSSSTSSSSFPSNSIPQPYAAALVRGRGDGDLTREPSAPPLSRPPPR
TARLLPPPPSPSINSFSSPPIAPRHDTLSADKFPAPAASSSPFLTPVKAP
DPVPPSHLLPPPPPPPPPPPSSSSSSSSSSLPSTLTFSLPPSCSLPGSAA
GTSPSLPLALPPSLPPPSSSRLLLVASVYASLLSLRLAPSLTTELHLLFR
LLTVHPALLLRPPALPPSLPPFLTSGHACNLLAAHTLALLPHLLSSLPPS
LLSLLLHVPALHDHVPHALPSLTRLPHSSHRPGPTSLALLPHHRDADGKG
RRWGGEVALPFVEEKDGRQLYAGSGWGQEVFNRQETARDLFLNLFREWEE
VRTRELDLRAVERWVGKEMPRRAREVLTGLDTWSLGWFAGVWVALLVKVG
AGGEGREGGGGGREEEVLARALGAKGGREGGGGEGGQPRGGGRGGSAATS
ASCSPSEVQRTVLPSSLKLHLLHRRLTAPSDTSFASFGREISHRSLPLPP
SSSPSPAPRRPSPRPSLPPALPSPRPLLSGAPTSFSTIS

mRNA from alignment at KK037253.1:213360..215341-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9415 ID=rna9415|Name=rna9415|organism=Nannochloropsis gaditana|type=mRNA|length=1982bp|location=Sequence derived from alignment at KK037253.1:213360..215341- (Nannochloropsis gaditana)
TGCGCTTCCATCCGCCCCCCCCCCCCACCAGCACCTTCCTTCCCGCCCCT
CGACCCGGCCCCGCGCCATTTGTTCCCGGAGGAAGAGGAGGTGGGCGGGG
GGGAGGAGGAGGTAGGACAACGGAAGGGAGGTGGGCACAAGGAAGGTTCG
GGTCCACGGACCCAGGATGCTTCCCTCCCTCGGGCTTGGGCAGGCCCCCA
GAAACTCCCTGAAGCTTCCCTCCCCTCATCCAGTCCCATCAGAGCGGGGC
GAGGAACCTCCCGGCGTCGCATACGGCCCACCCCGCTCTCGACGCTAGCT
TCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCTTTCCCCTCCAATTC
CATTCCCCAGCCCTACGCCGCTGCCTTGGTCCGAGGGAGGGGCGACGGGG
ATCTGACCCGAGAGCCCAGCGCCCCCCCCCTCTCCCGCCCTCCCCCGCGA
ACTGCCCGCCTCCTTCCTCCTCCCCCTTCACCGTCCATCAACTCCTTTTC
TTCCCCGCCCATCGCCCCCCGCCACGACACCTTGAGTGCCGACAAATTTC
CCGCCCCGGCCGCCTCCTCCTCCCCTTTCCTCACTCCCGTCAAGGCCCCC
GATCCCGTCCCGCCTTCGCACCTCCTTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCCTCCCATCCA
CCCTTACCTTCTCCTTACCTCCCTCCTGCTCTCTCCCCGGCAGCGCCGCA
GGGACCAGCCCCTCCCTCCCCCTCGCCCTCCCTCCTTCCCTCCCTCCCCC
TTCCTCCTCTCGCCTCCTCCTCGTCGCCTCCGTCTACGCGTCGCTCCTTT
CCCTCCGCCTTGCACCTTCCTTAACCACCGAGCTCCACCTCCTCTTCCGC
CTTCTCACGGTCCATCCCGCCCTCCTCCTGCGCCCGCCCGCCCTCCCTCC
CTCCCTTCCCCCCTTCCTCACCTCGGGCCACGCCTGCAATCTCCTTGCCG
CGCATACCCTCGCCCTCCTTCCGCACCTCCTCTCCTCCCTCCCTCCTTCC
CTCCTCTCCCTCCTCCTCCACGTGCCCGCCCTCCACGACCACGTCCCTCA
CGCCCTCCCCTCCCTCACCCGTCTGCCCCACTCTTCGCACCGCCCGGGCC
CTACCTCCCTCGCCCTCCTTCCACATCACAGAGATGCGGACGGGAAGGGG
AGGAGGTGGGGGGGGGAGGTGGCCCTTCCCTTCGTGGAGGAGAAGGACGG
ACGGCAACTCTACGCCGGGAGCGGGTGGGGCCAGGAGGTTTTCAACCGTC
AAGAAACGGCTCGGGATTTGTTTTTGAATTTGTTCCGGGAGTGGGAGGAG
GTGCGGACGCGGGAGCTGGATCTGCGGGCGGTGGAGCGATGGGTCGGGAA
GGAAATGCCCCGACGGGCCCGGGAGGTGCTGACGGGTTTGGACACCTGGT
CGTTGGGTTGGTTCGCAGGCGTGTGGGTGGCGCTGCTGGTGAAGGTGGGG
GCGGGGGGGGAAGGAAGGGAAGGAGGAGGGGGCGGGCGGGAGGAGGAGGT
GCTGGCGAGGGCCTTGGGCGCCAAGGGAGGGAGGGAGGGCGGGGGCGGGG
AAGGGGGACAACCAAGAGGAGGAGGGAGGGGCGGAAGCGCCGCCACCTCC
GCATCGTGCTCCCCCTCCGAGGTCCAGAGGACCGTCCTCCCATCCTCGCT
GAAGCTCCACTTGCTCCATCGCCGACTGACGGCCCCCTCCGACACGTCCT
TCGCCTCTTTCGGGCGGGAAATTTCCCACCGGTCCCTCCCTCTCCCTCCC
TCCTCCTCCCCCTCCCCGGCCCCGCGCCGGCCTTCCCCCCGTCCCTCCCT
CCCTCCCGCCCTCCCTTCCCCACGCCCTCTGCTTTCCGGGGCCCCAACGA
GTTTTTCTACCATTTCTTGATCAGCGCGGACAGCCACGCTTTCAACGCCG
TGCTTGTGGAGGTGATAGGAGCAGCCTTGCAA

Coding sequence (CDS) from alignment at KK037253.1:213360..215341-

>rna9415 ID=rna9415|Name=rna9415|organism=Nannochloropsis gaditana|type=CDS|length=1920bp|location=Sequence derived from alignment at KK037253.1:213360..215341- (Nannochloropsis gaditana)
TGCGCTTCCATCCGCCCCCCCCCCCCACCAGCACCTTCCTTCCCGCCCCT
CGACCCGGCCCCGCGCCATTTGTTCCCGGAGGAAGAGGAGGTGGGCGGGG
GGGAGGAGGAGGTAGGACAACGGAAGGGAGGTGGGCACAAGGAAGGTTCG
GGTCCACGGACCCAGGATGCTTCCCTCCCTCGGGCTTGGGCAGGCCCCCA
GAAACTCCCTGAAGCTTCCCTCCCCTCATCCAGTCCCATCAGAGCGGGGC
GAGGAACCTCCCGGCGTCGCATACGGCCCACCCCGCTCTCGACGCTAGCT
TCCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCTTTCCCCTCCAATTC
CATTCCCCAGCCCTACGCCGCTGCCTTGGTCCGAGGGAGGGGCGACGGGG
ATCTGACCCGAGAGCCCAGCGCCCCCCCCCTCTCCCGCCCTCCCCCGCGA
ACTGCCCGCCTCCTTCCTCCTCCCCCTTCACCGTCCATCAACTCCTTTTC
TTCCCCGCCCATCGCCCCCCGCCACGACACCTTGAGTGCCGACAAATTTC
CCGCCCCGGCCGCCTCCTCCTCCCCTTTCCTCACTCCCGTCAAGGCCCCC
GATCCCGTCCCGCCTTCGCACCTCCTTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCCTCCCATCCA
CCCTTACCTTCTCCTTACCTCCCTCCTGCTCTCTCCCCGGCAGCGCCGCA
GGGACCAGCCCCTCCCTCCCCCTCGCCCTCCCTCCTTCCCTCCCTCCCCC
TTCCTCCTCTCGCCTCCTCCTCGTCGCCTCCGTCTACGCGTCGCTCCTTT
CCCTCCGCCTTGCACCTTCCTTAACCACCGAGCTCCACCTCCTCTTCCGC
CTTCTCACGGTCCATCCCGCCCTCCTCCTGCGCCCGCCCGCCCTCCCTCC
CTCCCTTCCCCCCTTCCTCACCTCGGGCCACGCCTGCAATCTCCTTGCCG
CGCATACCCTCGCCCTCCTTCCGCACCTCCTCTCCTCCCTCCCTCCTTCC
CTCCTCTCCCTCCTCCTCCACGTGCCCGCCCTCCACGACCACGTCCCTCA
CGCCCTCCCCTCCCTCACCCGTCTGCCCCACTCTTCGCACCGCCCGGGCC
CTACCTCCCTCGCCCTCCTTCCACATCACAGAGATGCGGACGGGAAGGGG
AGGAGGTGGGGGGGGGAGGTGGCCCTTCCCTTCGTGGAGGAGAAGGACGG
ACGGCAACTCTACGCCGGGAGCGGGTGGGGCCAGGAGGTTTTCAACCGTC
AAGAAACGGCTCGGGATTTGTTTTTGAATTTGTTCCGGGAGTGGGAGGAG
GTGCGGACGCGGGAGCTGGATCTGCGGGCGGTGGAGCGATGGGTCGGGAA
GGAAATGCCCCGACGGGCCCGGGAGGTGCTGACGGGTTTGGACACCTGGT
CGTTGGGTTGGTTCGCAGGCGTGTGGGTGGCGCTGCTGGTGAAGGTGGGG
GCGGGGGGGGAAGGAAGGGAAGGAGGAGGGGGCGGGCGGGAGGAGGAGGT
GCTGGCGAGGGCCTTGGGCGCCAAGGGAGGGAGGGAGGGCGGGGGCGGGG
AAGGGGGACAACCAAGAGGAGGAGGGAGGGGCGGAAGCGCCGCCACCTCC
GCATCGTGCTCCCCCTCCGAGGTCCAGAGGACCGTCCTCCCATCCTCGCT
GAAGCTCCACTTGCTCCATCGCCGACTGACGGCCCCCTCCGACACGTCCT
TCGCCTCTTTCGGGCGGGAAATTTCCCACCGGTCCCTCCCTCTCCCTCCC
TCCTCCTCCCCCTCCCCGGCCCCGCGCCGGCCTTCCCCCCGTCCCTCCCT
CCCTCCCGCCCTCCCTTCCCCACGCCCTCTGCTTTCCGGGGCCCCAACGA
GTTTTTCTACCATTTCTTGA

Synonyms

Publications