rna9411, rna9411 (mRNA) Nannochloropsis gaditana

Overview
Namerna9411
Unique Namerna9411
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length839
Alignment locationKK037253.1:202240..202797 -

Link to JBrowse

Properties
Property NameValue
Productatp-dependent clp atp-binding subunit
Orig transcript idgnl|cribi|Naga_102592g1.10590.mrna
Orig protein idgnl|cribi|Naga_102592g1.10590
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:202240..202797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102592g1gene9131Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9411rna9411-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21292.1cds9381Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9411 ID=rna9411|Name=rna9411|organism=Nannochloropsis gaditana|type=mRNA|length=839bp
GTTGGGGCTTAAGGTGGAGGAGAACGTCCTCCATGTCCTCGCCGACCTGG
GCTACGACCCTGCCTACGGCGCCCGCCCCTTGAAACGGGCGCTGCAAACT
GCCGTTTTGAATCCGTTGGCGACCCTCCTCTTGGAGGGGCGGGCGAAGGC
CGAGTCTCTCCTTTGGTTGGTTCGGATGCCACGAAGGGAGGTGCGGGAAG
GGAGGGACCTGGTGATCTATGGGAAGGGTGCGATAGGAGGGGAGGAGGAG
GGAGAGGGGGAGGAGGGGCTGGAGGGCTTGCTCCTGGGCGAGGACGTCCT
TGTCTGCCGCGTGGTGGAGGGAGGATTTGTGGAAGGGGGGGAGAAGGGGG
GGGGGGAGGAGGGGAAGGAGGCGGGAAGGGAGAGGGAGGGAGAGGCTGCA
TAGATACTGAAGAGGGAAAAACGAGGGAGGGACAGATGGAGGGAAGGAGG
GAGGAAAGATTTAAAGGACCTCACTGCCGCGAGGGGCGTGGCAAGGAAGC
TTGGATAAGGAGGAAGCCGACAGGAAGGGAGGGATAAAGGTCTCGATAGA
GGGTAGAATTTACAAAGCAGGAGAGTGTACAGGATTGTCATGCGTCGAGG
AGCTGGGGGCAGAGAGGTGCTACCGAGTGACCTTTGTTTGGTCGAGGCCC
CTCCGAAAGGGAGGTGAAAAGGAGCTTAAGGGCGGGGGGGATGGACACAT
ATGGTGAGGAAAATCTTTGTCTTGGTTCTTGTTGACGTTTTCGAAAAGAA
ACGGAGGTAACCCTGTCAATGTGCTGACGACTTCTTCGTAGGCGGTTGTA
CGGCCATCGCCGGGGGATTGATCATTTCTTTCCACTACT
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protein sequence of rna9411

>rna9411-protein ID=rna9411-protein|Name=rna9411|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPP
LGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAARED
VMRVVRAALPPEFINRYGAP
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mRNA from alignment at KK037253.1:202240..202797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9411 ID=rna9411|Name=rna9411|organism=Nannochloropsis gaditana|type=mRNA|length=558bp|location=Sequence derived from alignment at KK037253.1:202240..202797- (Nannochloropsis gaditana)
ATGACGACGCATTGCACGCCCGCCCCCCGCACGGCTCACTTGCCCCTCCC
TCCTTTCCTTCTCCTCCCCCGCTTTTCCCTCCCCTCCTCGTCTTCAGGAG
GGTGGGGTGCTGACAGAGGCGGTGCGACGGCAGCCCTATCAGGTCCTCCT
CTTGGACGAGTTCGAGAAAGCGCACCGAGAGGTGGGCAACCTCCTCCTCC
AAGTCTTCGACGACGGTCGCCTCACAGACTCGCAGGTAGGTAGGGAGGAA
GGGAGGGAGGGAGGGATCAAAGGCTGGCACGGTTTTGGTGGACCATCCTG
GACAAGGACACCGCCAGGAGGCTGGATATCCAACCCTCCAATTCCCTCCC
TTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCAGGGCCGAACGGTCGACT
TCCGCAACACCATCATCATTATGACCAGCAACCTTGGGGCCCAGTACCTG
AGCGAGCTGCCCCCGGACAAGCCCTCTTCAGCGGCCAGGGAGGACGTGAT
GCGGGTAGTACGGGCGGCGCTCCCGCCGGAATTCATCAACCGGTACGGGG
CACCTTAA
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Coding sequence (CDS) from alignment at KK037253.1:202240..202797-

>rna9411 ID=rna9411|Name=rna9411|organism=Nannochloropsis gaditana|type=CDS|length=1089bp|location=Sequence derived from alignment at KK037253.1:202240..202797- (Nannochloropsis gaditana)
GGCCGAACGGTCGACTTCCGCAACACCATCATCATTATGACCAGCAACCT
TGGGGCCCAGTACCTGAGCGAGCTGCCCCCGGACAAGCCCTCTTCAGCGG
CCAGGGAGGACGTGATGCGGGTAGTACGGGCGGCGCTCCCGCCGGAATTC
ATCAACCGGTACGGGGCACCTTAAACTCGCAGATGACGACGCATTGCACG
CCCGCCCCCCGCACGGCTCACTTGCCCCTCCCTCCTTTCCTTCTCCTCCC
CCGCTTTTCCCTCCCCTCCTCGTCTTCAGGAGGGTGGGGTGCTGACAGAG
GCGGTGCGACGGCAGCCCTATCAGGTCCTCCTCTTGGACGAGTTCGAGAA
AGCGCACCGAGAGGGCCGAACGGTCGACTTCCGCAACACCATCATCATTA
TGACCAGCAACCTTGGGGCCCAGTACCTGAGCGAGCTGCCCCCGGACAAG
CCCTCTTCAGCGGCCAGGGAGGACGTGATGCGGGTAGTACGGGCGGCGCT
CCCGCCGGAATTCATCAACCGGTACGGGGCACCTTAAACTCGCAGATGAC
GACGCATTGCACGCCCGCCCCCCGCACGGCTCACTTGCCCCTCCCTCCTT
TCCTTCTCCTCCCCCGCTTTTCCCTCCCCTCCTCGTCTTCAGGAGGGTGG
GGTGCTGACAGAGGCGGTGCGACGGCAGCCCTATCAGGTCCTCCTCTTGG
ACGAGTTCGAGAAAGCGCACCGAGAGGGCCGAACGGTCGACTTCCGCAAC
ACCATCATCATTATGACCAGCAACCTTGGGGCCCAGTACCTGAGCGAGCT
GCCCCCGGACAAGCCCTCTTCAGCGGCCAGGGAGGACGTGATGCGGGTAG
TACGGGCGGCGCTCCCGCCGGAATTCATCAACCGGTACGGGGCACCTTAA
ACTCGCAGATGACGACGCATTGCACGCCCGCCCCCCGCACGGCTCACTTG
CCCCTCCCTCCTTTCCTTCTCCTCCCCCGCTTTTCCCTCCCCTCCTCGTC
TTCAGGAGGGTGGGGTGCTGACAGAGGCGGTGCGACGGCAGCCCTATCAG
GTCCTCCTCTTGGACGAGTTCGAGAAAGCGCACCGAGAG
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Synonyms
Publications