EWM21292.1, cds9381 (CDS) Nannochloropsis gaditana

Overview
NameEWM21292.1
Unique Namecds9381
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:202617..202797 -
Alignment locationKK037253.1:202563..202570 -
Alignment locationKK037253.1:202240..202413 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21292.1
Productatp-dependent clp atp-binding subunit
Orig transcript idgnl|cribi|Naga_102592g1.10590.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:202617..202797 -
KK037253.1supercontigKK037253.1:202563..202570 -
KK037253.1supercontigKK037253.1:202240..202413 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0009628response to abiotic stimulus
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
Homology
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|585101462|gb|EWM21292.1| (atp-dependent clp atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 240.736 bits (613), Expect = 1.910e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPPLGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINRYGAP 120
            MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPPLGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINRYGAP
Sbjct:    1 MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPPLGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINRYGAP 120          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|1207841749|gb|OWK19201.1| (hypothetical protein AJ88_43865 [Mesorhizobium amorphae CCBAU 01583])

HSP 1 Score: 81.6481 bits (200), Expect = 4.745e-17
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            D QGRTVDFRNT+IIMTSNLGA+YL  L  D+   A R++VM VVRA+  PEF+NR
Sbjct:    9 DGQGRTVDFRNTLIIMTSNLGAEYLVSLGEDQDVDAVRDEVMGVVRASFRPEFLNR 64          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|1131010209|ref|WP_075771420.1| (ATP-dependent chaperone ClpB [Rhodocista sp. MIMtkB3])

HSP 1 Score: 85.5001 bits (210), Expect = 5.114e-17
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            D QGRTVDFRNT+I+MTSNLGAQ L+ELP    S AARE VM VVR A  PEF+NR
Sbjct:  701 DGQGRTVDFRNTLIVMTSNLGAQALAELPEGADSGAAREQVMEVVRTAFRPEFLNR 756          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|1153233702|gb|AQX31306.1| (ATP-dependent Clp protease ATP-binding subunit ClpB [Bartonella schoenbuchensis R1])

HSP 1 Score: 85.1149 bits (209), Expect = 7.889e-17
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            DSQGRTVDFRNT++IMTSNLGA  L+ LP  + + AAR+DVMR+V+AA  PEF+NR
Sbjct:  469 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 524          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|319409261|emb|CBI82905.1| (ATP-dependent clp protease, atp-binding subunit ClpB [Bartonella schoenbuchensis R1])

HSP 1 Score: 84.7297 bits (208), Expect = 9.408e-17
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            DSQGRTVDFRNT++IMTSNLGA  L+ LP  + + AAR+DVMR+V+AA  PEF+NR
Sbjct:  701 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 756          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|754116532|ref|WP_041751152.1| (ATP-dependent chaperone ClpB [Bradyrhizobium sp. BTAi1])

HSP 1 Score: 84.7297 bits (208), Expect = 1.007e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            D QGRTVDFRNTII++TSNLGA+YL+ LP  KP+  ARE VM VVR +  PEF+NR
Sbjct:  699 DGQGRTVDFRNTIIVLTSNLGAEYLAALPEGKPAEEAREQVMEVVRRSFRPEFLNR 754          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|146411110|gb|ABQ39616.1| (Chaperone clpB [Bradyrhizobium sp. BTAi1])

HSP 1 Score: 84.7297 bits (208), Expect = 1.008e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            D QGRTVDFRNTII++TSNLGA+YL+ LP  KP+  ARE VM VVR +  PEF+NR
Sbjct:  713 DGQGRTVDFRNTIIVLTSNLGAEYLAALPEGKPAEEAREQVMEVVRRSFRPEFLNR 768          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|631776884|emb|CDP80614.1| (ATP-dependent clp protease, ATP-binding subunit ClpB [Bartonella schoenbuchensis])

HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-16
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            DSQGRTVDFRNT++IMTSNLGA  L+ LP  + + AAR+DVMR+V+AA  PEF+NR
Sbjct:  701 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 756          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|498390373|ref|WP_010704293.1| (ATP-dependent chaperone ClpB [Bartonella schoenbuchensis] >gi|478416859|gb|ENN90596.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Bartonella schoenbuchensis m07a])

HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-16
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            DSQGRTVDFRNT++IMTSNLGA  L+ LP  + + AAR+DVMR+V+AA  PEF+NR
Sbjct:  701 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 756          
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|783164545|ref|WP_045678991.1| (ATP-dependent chaperone ClpB [Martelella endophytica] >gi|779727332|gb|AJY44424.1| ATPase AAA [Martelella endophytica])

HSP 1 Score: 84.3445 bits (207), Expect = 1.212e-16
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0
Query:   61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
            D QGRTVDFRNTIIIMTSNLGA++L++L  ++ SSAARE VM VV+AA  PEF+NR
Sbjct:  703 DGQGRTVDFRNTIIIMTSNLGAEFLTQLADNEDSSAAREQVMDVVKAAFRPEFLNR 758          
The following BLAST results are available for this feature:
BLAST of EWM21292.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101462|gb|EWM21292.1|1.910e-80100.00atp-dependent clp atp-binding subunit [Nannochloro... [more]
gi|1207841749|gb|OWK19201.1|4.745e-1766.07hypothetical protein AJ88_43865 [Mesorhizobium amo... [more]
gi|1131010209|ref|WP_075771420.1|5.114e-1771.43ATP-dependent chaperone ClpB [Rhodocista sp. MIMtk... [more]
gi|1153233702|gb|AQX31306.1|7.889e-1767.86ATP-dependent Clp protease ATP-binding subunit Clp... [more]
gi|319409261|emb|CBI82905.1|9.408e-1767.86ATP-dependent clp protease, atp-binding subunit Cl... [more]
gi|754116532|ref|WP_041751152.1|1.007e-1667.86ATP-dependent chaperone ClpB [Bradyrhizobium sp. B... [more]
gi|146411110|gb|ABQ39616.1|1.008e-1667.86Chaperone clpB [Bradyrhizobium sp. BTAi1][more]
gi|631776884|emb|CDP80614.1|1.165e-1667.86ATP-dependent clp protease, ATP-binding subunit Cl... [more]
gi|498390373|ref|WP_010704293.1|1.165e-1667.86ATP-dependent chaperone ClpB [Bartonella schoenbuc... [more]
gi|783164545|ref|WP_045678991.1|1.212e-1671.43ATP-dependent chaperone ClpB [Martelella endophyti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9411rna9411Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications