EWM21292.1, cds9381 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|585101462|gb|EWM21292.1| (atp-dependent clp atp-binding subunit [Nannochloropsis gaditana]) HSP 1 Score: 240.736 bits (613), Expect = 1.910e-80 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPPLGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINRYGAP 120
MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPPLGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINRYGAP
Sbjct: 1 MTTHCTPAPRTAHLPLPPFLLLPRFSLPSSSSGGWGADRGGATAALSGPPLGRVRESAPRDSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINRYGAP 120
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|1207841749|gb|OWK19201.1| (hypothetical protein AJ88_43865 [Mesorhizobium amorphae CCBAU 01583]) HSP 1 Score: 81.6481 bits (200), Expect = 4.745e-17 Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
D QGRTVDFRNT+IIMTSNLGA+YL L D+ A R++VM VVRA+ PEF+NR
Sbjct: 9 DGQGRTVDFRNTLIIMTSNLGAEYLVSLGEDQDVDAVRDEVMGVVRASFRPEFLNR 64
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|1131010209|ref|WP_075771420.1| (ATP-dependent chaperone ClpB [Rhodocista sp. MIMtkB3]) HSP 1 Score: 85.5001 bits (210), Expect = 5.114e-17 Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
D QGRTVDFRNT+I+MTSNLGAQ L+ELP S AARE VM VVR A PEF+NR
Sbjct: 701 DGQGRTVDFRNTLIVMTSNLGAQALAELPEGADSGAAREQVMEVVRTAFRPEFLNR 756
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|1153233702|gb|AQX31306.1| (ATP-dependent Clp protease ATP-binding subunit ClpB [Bartonella schoenbuchensis R1]) HSP 1 Score: 85.1149 bits (209), Expect = 7.889e-17 Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
DSQGRTVDFRNT++IMTSNLGA L+ LP + + AAR+DVMR+V+AA PEF+NR
Sbjct: 469 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 524
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|319409261|emb|CBI82905.1| (ATP-dependent clp protease, atp-binding subunit ClpB [Bartonella schoenbuchensis R1]) HSP 1 Score: 84.7297 bits (208), Expect = 9.408e-17 Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
DSQGRTVDFRNT++IMTSNLGA L+ LP + + AAR+DVMR+V+AA PEF+NR
Sbjct: 701 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 756
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|754116532|ref|WP_041751152.1| (ATP-dependent chaperone ClpB [Bradyrhizobium sp. BTAi1]) HSP 1 Score: 84.7297 bits (208), Expect = 1.007e-16 Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
D QGRTVDFRNTII++TSNLGA+YL+ LP KP+ ARE VM VVR + PEF+NR
Sbjct: 699 DGQGRTVDFRNTIIVLTSNLGAEYLAALPEGKPAEEAREQVMEVVRRSFRPEFLNR 754
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|146411110|gb|ABQ39616.1| (Chaperone clpB [Bradyrhizobium sp. BTAi1]) HSP 1 Score: 84.7297 bits (208), Expect = 1.008e-16 Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
D QGRTVDFRNTII++TSNLGA+YL+ LP KP+ ARE VM VVR + PEF+NR
Sbjct: 713 DGQGRTVDFRNTIIVLTSNLGAEYLAALPEGKPAEEAREQVMEVVRRSFRPEFLNR 768
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|631776884|emb|CDP80614.1| (ATP-dependent clp protease, ATP-binding subunit ClpB [Bartonella schoenbuchensis]) HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-16 Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
DSQGRTVDFRNT++IMTSNLGA L+ LP + + AAR+DVMR+V+AA PEF+NR
Sbjct: 701 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 756
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|498390373|ref|WP_010704293.1| (ATP-dependent chaperone ClpB [Bartonella schoenbuchensis] >gi|478416859|gb|ENN90596.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Bartonella schoenbuchensis m07a]) HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-16 Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
DSQGRTVDFRNT++IMTSNLGA L+ LP + + AAR+DVMR+V+AA PEF+NR
Sbjct: 701 DSQGRTVDFRNTLLIMTSNLGADILTALPEGQTTDAARDDVMRIVKAAFRPEFLNR 756
BLAST of EWM21292.1 vs. NCBI_GenBank
Match: gi|783164545|ref|WP_045678991.1| (ATP-dependent chaperone ClpB [Martelella endophytica] >gi|779727332|gb|AJY44424.1| ATPase AAA [Martelella endophytica]) HSP 1 Score: 84.3445 bits (207), Expect = 1.212e-16 Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0
Query: 61 DSQGRTVDFRNTIIIMTSNLGAQYLSELPPDKPSSAAREDVMRVVRAALPPEFINR 116
D QGRTVDFRNTIIIMTSNLGA++L++L ++ SSAARE VM VV+AA PEF+NR
Sbjct: 703 DGQGRTVDFRNTIIIMTSNLGAEFLTQLADNEDSSAAREQVMDVVKAAFRPEFLNR 758 The following BLAST results are available for this feature:
BLAST of EWM21292.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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