rna9395, rna9395 (mRNA) Nannochloropsis gaditana

Overview
Namerna9395
Unique Namerna9395
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1752
Alignment locationKK037253.1:163396..165091 -

Link to JBrowse

Properties
Property NameValue
Productbeta- -galactosyltransferase 3
Orig transcript idgnl|cribi|Naga_100535g2.6006.mrna
Orig protein idgnl|cribi|Naga_100535g2.6006
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:163396..165091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100535g2gene9115Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21309.1cds9365Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9395rna9395-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9395 ID=rna9395|Name=rna9395|organism=Nannochloropsis gaditana|type=mRNA|length=1752bp
CTATGACAACGGGCTGTAGACATCTGAAACTGTGAAATCTGGTCGCAGCA
ACTCGAAGCTCGTGAGCTCGCCAAGGCAACGAACACAATGACGTCGCAAG
TTGAAGCGCCTACTTGCATTCCCTAGACCAAGCCTTTATGTGGCTTGGGG
GGCACGACACGAACTTGACGCTTCCTTGGGTCTTTTTGATATCATACACT
CACATGCCAAGAAGGATCGAGACTATCCTCGCTCAAGCAGGCTTACACTA
CCAGGACATCACAGCCGTTTCCTCCCGTGACGTGATCCCCCCATTACACC
TTTCTACCACCTTTGAGAGGGGTAGTGATGGCTCCTATCCCGGGGGCTTT
GTCTACGCACGGCATGGCAATCCCACCCGGGCCTTGCTGGAAAAAGTCAT
GACCGACTTGGAAGGCGGCGCCGACTGGTCCGCGGCCTTCACATGCGGCA
TGCAGGCCGTGACCGCCGTCTTCCTCGCCTTTGGGGCCCAGGCCACTGTG
CTCCTGAACCAAGAGCTGTATCAGGGCATCCGCCTCCTCCTGGACGCCCC
CTTCGGCTCCTGGGGGCTCCGTGCGCAGGTGGTGGACATGACGGACCTGG
GAGCCTTGGAGGTTGCCATGGCCCGAGTCTTCGCGGACCCGGCGACTGCG
AGGGTGCTCCTGTGGCTGGAGACCCCCTCCAACCCCATGCTACAGATCAT
AGACGTCCGGGCGGTCATTGCCATGGCCGAAGGGCAGGCCCGGCTCCACC
GGAAGGACTTCGTCTCGGTGCTGGACACTACCTGGCTCACGCCCTACCTC
CTCCAGGCCGTCGGCCCCCTCCGCATCGACCTGACCCTCGCCAGCGCCAC
CAAATTCCTGGGGGGGCACTCGGACCTGCTGGCTGGCGTTCTCACGGGCC
GACGGAGGAAGCTTTCTCACGCTACCGGCACCACTTTCCTGGATCTAGAA
GCACCCATCCGCCAGCTCCAACGCCACGCCGGGGGCAACCTCCCCCCTTT
CGAGGCCTGGCTCCTCTTGCGAGGGCTGAAGTCCCTCCCGGCTCGGATGC
GGACGCACTGTGAGAACGCGCACAGGTTGGCCCATTTCTTCGCGAGCCAC
CCGAGGATTGCCGCCGTTCACTACCCGGGCCTACCCTCCCACCCCGGGCA
CGCCGTGCACTCGGCCATGATGAGTCGGGAGGGTCTCTCCGGGAGCATGA
TGGCGATCCAGGTCCGGGCGCGGGACGGCGAGGGGGAGGACGGAAGGGAG
GAAGGGGCGGAGGTGGAGGCGATGGTCCTGCGCGTAGTGGCCCGGCTGCG
GGTGTTCCGGCGAGCGACCTCCCTGGGGGGCACTGAGAGTCTGTGCGAGC
ATCGCCGGAGCGTGGAAGGAGCGGAGAGCCGAACCCCGTGGGACCTGGTT
CGGCTCAGTGTGGGCCTGGAGGCCTACGAGGATTTGGAGGAGGACTGGGT
GCAGGCTTTGGGCGAGGAGGGGTGACGGGGAAGGAGAGGGCGGAAGCCCA
GTGGACGAGACCCGATGATGCCTGTGGAGGCACTCGAGTCCAGCCCCCCC
CCCGCGTACCTGATTCCCTTCCTCTACCCCTTTCGACACCCAAGACCATC
GACCCACTCTGTATAGGACCCTCTCAACGCCCTCCGGCTCGGCCTCCCCT
TGCTTTTTTTAAATTTAAGGTTGCTTGGTTTGCATTGAACGTTACTTCTT
GTGAACTGAACAGGCCAACACTTGCTTCCAAAATTGAATGCTTTTCCATT
CC
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protein sequence of rna9395

>rna9395-protein ID=rna9395-protein|Name=rna9395|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MPAPVEPRPPCASDTDTGQNRQPQEQQPQSSLPGTFPTLSGPDATSNSIP
GGGNSEGSCPGPSPSVTKDVAETALREDRGNGSERQERATSILIVPYRDL
YPEQERARHLQRFLREMPALLTAFGDPARRKTGGGGGEGVGEQREGVPEG
KESEGKGRGQKEEEGEGKEGSGSPGAPLYHIYIVEQSKDGRKFNRGKLLN
IGFDVALKDGEGTGEGGKEGGRAAASVFIFHDVDLLPSRELVPLYLTRPS
RPLHIARAWGRYSGNPRYLGGAIAFNATDFQKINGFPNTFWGWGGEDDEM
RKRVEQVGLEVGAPAAEEGGRMEDMEGVSLEEKLQALRRNREWKCNVKWE
ALGEHAETWRQNGLKDLRYEVMGREELEGEVGGGGGRITKLTVDVRENGH
WTDTVVEIEGPAGGGGKGGKRGREGERKGPGGRGRWRR
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mRNA from alignment at KK037253.1:163396..165091-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9395 ID=rna9395|Name=rna9395|organism=Nannochloropsis gaditana|type=mRNA|length=1696bp|location=Sequence derived from alignment at KK037253.1:163396..165091- (Nannochloropsis gaditana)
GTTACAGGCACATGGATGGCCCAGGGGGGGGAGGTTAACGGGGATGGCTT
TGCCACGTATGGGTGGGGGACTCAGGACGCTGAGAGGGCCCGAGGGTTCC
CCAAAAAGGCTGTGTGATGGGTAAAATAAGAAATATGAGATGAGATGATT
TCTCGTGGCCGGCATAAAGGATTTTACGTTGGCAACATGGTCTGAAAAAC
GGTTCTCCTTTGGCTTCCGTGCGGCCGGCCCGTTCCCTCCCTTCTAGTCA
CAACAATACGAGTGAATGAATTGACACTCAACATGGCAACATTTCTATCA
AGAAAACAAATTCACGGTAAAGGGATTCCCGTCAAGCCACAGACTCGTCC
CCAAAAAGACAGGTTGGACATTTCAGGTCATGCCCGCGCCAGTTGAACCC
CGCCCCCCCTGTGCTAGCGACACGGACACGGGGCAAAATCGGCAACCACA
AGAGCAACAGCCGCAGTCGTCCCTTCCTGGAACATTTCCGACGCTTTCCG
GGCCCGACGCTACCAGCAACAGCATCCCTGGCGGCGGTAATAGCGAAGGC
TCTTGTCCAGGACCCTCTCCCTCTGTCACGAAGGACGTGGCGGAGACGGC
CTTGAGAGAAGACAGGGGAAATGGTAGCGAAAGGCAGGAACGTGCAACAT
CGATTCTTATAGTTCCCTACCGAGACCTGTATCCCGAGCAGGAACGTGCT
CGGCATCTGCAACGCTTCCTAAGGGAGATGCCAGCCTTGCTTACCGCATT
CGGGGACCCGGCACGGAGGAAGACAGGAGGAGGAGGAGGAGAAGGAGTGG
GAGAACAGAGAGAAGGGGTGCCCGAAGGAAAAGAGAGCGAGGGAAAAGGA
CGCGGCCAAAAAGAGGAGGAAGGGGAAGGAAAGGAAGGTTCAGGGAGCCC
CGGCGCCCCTCTTTACCACATCTACATCGTGGAGCAGAGCAAGGACGGCC
GGAAGTTCAACCGAGGGAAGCTCCTGAACATTGGTTTCGACGTCGCCTTG
AAGGACGGGGAGGGAACGGGGGAGGGGGGGAAGGAGGGAGGGAGGGCGGC
GGCCTCGGTTTTTATTTTCCACGACGTGGACTTGCTCCCCAGCCGGGAGC
TTGTTCCCCTCTACCTTACCCGTCCTTCCCGCCCCCTCCACATCGCCCGG
GCCTGGGGCCGCTACAGCGGGAACCCTCGTTACTTGGGGGGGGCAATCGC
ATTCAACGCCACGGATTTTCAAAAAATCAACGGTTTCCCCAATACGTTTT
GGGGGTGGGGGGGCGAGGACGATGAGATGAGGAAGCGGGTGGAGCAGGTT
GGGTTGGAAGTAGGTGCGCCGGCGGCGGAGGAGGGAGGGCGCATGGAGGA
CATGGAGGGCGTGAGTCTGGAGGAAAAATTGCAGGCTTTGCGGCGGAACC
GGGAGTGGAAGTGTAATGTGAAGTGGGAGGCTCTGGGAGAGCACGCTGAG
ACGTGGAGGCAGAACGGCCTGAAGGACTTGCGGTACGAAGTGATGGGGCG
GGAAGAGCTGGAGGGGGAGGTGGGGGGCGGGGGGGGGCGGATCACGAAGC
TGACGGTGGACGTGAGGGAGAACGGGCACTGGACCGACACGGTGGTGGAG
ATCGAGGGCCCCGCTGGAGGGGGCGGCAAGGGGGGGAAGAGGGGGCGGGA
GGGCGAGAGGAAGGGGCCAGGCGGCCGAGGTCGTTGGCGGAGGTGA
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Coding sequence (CDS) from alignment at KK037253.1:163396..165091-

>rna9395 ID=rna9395|Name=rna9395|organism=Nannochloropsis gaditana|type=CDS|length=1317bp|location=Sequence derived from alignment at KK037253.1:163396..165091- (Nannochloropsis gaditana)
ATGCCCGCGCCAGTTGAACCCCGCCCCCCCTGTGCTAGCGACACGGACAC
GGGGCAAAATCGGCAACCACAAGAGCAACAGCCGCAGTCGTCCCTTCCTG
GAACATTTCCGACGCTTTCCGGGCCCGACGCTACCAGCAACAGCATCCCT
GGCGGCGGTAATAGCGAAGGCTCTTGTCCAGGACCCTCTCCCTCTGTCAC
GAAGGACGTGGCGGAGACGGCCTTGAGAGAAGACAGGGGAAATGGTAGCG
AAAGGCAGGAACGTGCAACATCGATTCTTATAGTTCCCTACCGAGACCTG
TATCCCGAGCAGGAACGTGCTCGGCATCTGCAACGCTTCCTAAGGGAGAT
GCCAGCCTTGCTTACCGCATTCGGGGACCCGGCACGGAGGAAGACAGGAG
GAGGAGGAGGAGAAGGAGTGGGAGAACAGAGAGAAGGGGTGCCCGAAGGA
AAAGAGAGCGAGGGAAAAGGACGCGGCCAAAAAGAGGAGGAAGGGGAAGG
AAAGGAAGGTTCAGGGAGCCCCGGCGCCCCTCTTTACCACATCTACATCG
TGGAGCAGAGCAAGGACGGCCGGAAGTTCAACCGAGGGAAGCTCCTGAAC
ATTGGTTTCGACGTCGCCTTGAAGGACGGGGAGGGAACGGGGGAGGGGGG
GAAGGAGGGAGGGAGGGCGGCGGCCTCGGTTTTTATTTTCCACGACGTGG
ACTTGCTCCCCAGCCGGGAGCTTGTTCCCCTCTACCTTACCCGTCCTTCC
CGCCCCCTCCACATCGCCCGGGCCTGGGGCCGCTACAGCGGGAACCCTCG
TTACTTGGGGGGGGCAATCGCATTCAACGCCACGGATTTTCAAAAAATCA
ACGGTTTCCCCAATACGTTTTGGGGGTGGGGGGGCGAGGACGATGAGATG
AGGAAGCGGGTGGAGCAGGTTGGGTTGGAAGTAGGTGCGCCGGCGGCGGA
GGAGGGAGGGCGCATGGAGGACATGGAGGGCGTGAGTCTGGAGGAAAAAT
TGCAGGCTTTGCGGCGGAACCGGGAGTGGAAGTGTAATGTGAAGTGGGAG
GCTCTGGGAGAGCACGCTGAGACGTGGAGGCAGAACGGCCTGAAGGACTT
GCGGTACGAAGTGATGGGGCGGGAAGAGCTGGAGGGGGAGGTGGGGGGCG
GGGGGGGGCGGATCACGAAGCTGACGGTGGACGTGAGGGAGAACGGGCAC
TGGACCGACACGGTGGTGGAGATCGAGGGCCCCGCTGGAGGGGGCGGCAA
GGGGGGGAAGAGGGGGCGGGAGGGCGAGAGGAAGGGGCCAGGCGGCCGAG
GTCGTTGGCGGAGGTGA
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Synonyms
Publications