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Properties
| Property Name | Value |
|---|
| Product | isocitrate dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100022g53.872.mrna |
| Orig protein id | gnl|cribi|Naga_100022g53.872 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:778855..781946 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna939 ID=rna939|Name=rna939|organism=Nannochloropsis gaditana|type=mRNA|length=1123bp
CGAGTCCTTGACTGGCTTTCCCACAGCTTCCACGCACACACAGGCCGCCG
CAAAAATCACACCCTCACGCTCACCACCATCTCCTGTGTTCCAGATTCCA
AGAGATCATCCTTTGTATCATGGGACGCTACACTAGCGTACAAGCGTACG
GCGATAACAACCCGAAGATAGCCAGTGTTGCCTATGATGGCGGTGAGGAT
CGCGATGGCAACCCCCAGCGCAGCAAGGTAAAAGAAAATAGGAGGAGACG
GTAACGCACGCGATAGTCCGGCGCAAGTGTTGACTTGACGACCCGGGCCC
CGAGTACTGCTTCTTCTTTCTTTGTCTTTCTTCGCGCCTCTTTCTTTGTC
GTAACAATGGAACCAAATCACGAGTGGGTTTCTCTGCTTCTGTTTACATC
ACACCTTTTCACGCCTTTGAACATATCTCTAGATTGAAAAGCTGGAAAAT
GTCACAGGAAGTACAGCGGGGGCTAGCAGCAGCAGCTTCCATATATATCG
GGCGCACCGACGCACGGAAATGGCTCGCTTGGCGGAGATGGAGGAGAAAG
CCACAGCAGAGGAAGAGCAGAAGATCTATGAAGAATCTATGGAGCGCAAG
AGGAAGGAGAGTGAAGAGCGGACCCGAAAACTTGCCGAGAAGCGTCGTCG
TAGAAGACTTGCCAAAAAGCAAAGAAGGGGACATGGAGAGGTTTTTTCCA
GCAATGGGAGAGACGAGGACGGGAGCATGGATGAAGAAGACAAGGATTTG
AGCGAAACTACGGGGAAAAAACAGTGCGTTTCGGAGAATACTCTGTGCAT
GCCAATTGTGCAAATCAAGGATGATGGAAATTTCATGCAGATGATGTTGG
CACTAGAAAAGGATCGAAGGGGAGGGCAGACGAGAAACACGTGACATTTT
GTCCTGCATGGAGCAGCGCTCATGGGAATGGAAGACTGCCAAAATAAAAT
TTCACTCGCTGTACAAAAATTCTAGGGGCAAAAAGCATGTAATCGAGCAA
CTATTAAAAGGAGCTGGAGCAGCAACATCTTCAGAGGTTTGACACATGTC
GGTGTGCAGAGGTAGTGGTCACCGAGAGAAAAAGTGCCAATACGTTGGTC
AACAAAGAGACAATCACCAGGCT back to topprotein sequence of rna939 >rna939-protein ID=rna939-protein|Name=rna939|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MMRSVGFISSRTVSQTSSFSSSPPALYRLMDSRSFSRTAAVGAKIKVENP
VVDLDGDEMTRVIWKQIKDKLILPYLDLKIEYYDLGLPNRDKTNDQVTVD
AANAIKKFNVGIKCATITPDEQRVEEFKLKEMWRSPNGTIRNILNGTVFR
EPIVISNIPRIIPGWVKPIVVGRHAFGDQYRATDFVVDKPGKFEMTFTST
DGTEKKTWNVFDFKGAGVGMAMYNTDESIRGFAHSCFAYALMKGWPLFLS
TKNTILKKYDGRFKDIFEEIYEKEYKAQYEAMGITYTHRLIDDMVAQVLK
SEGGVVWACKNYDGDVQSDIVAQGYGSLGLMTSVLITPDGKTVESEAAHG
TVTRHWREYQKGKPTSTNPIASIFAWTRGLQHRAKLDNNPILTKFSLDME
AAVIKTVEKGFMTKDLAICVHGWTVSPDKYLTTDAFLDKVKLTYENLVL back to topmRNA from alignment at CM002456.1:778855..781946- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna939 ID=rna939|Name=rna939|organism=Nannochloropsis gaditana|type=mRNA|length=3092bp|location=Sequence derived from alignment at CM002456.1:778855..781946- (Nannochloropsis gaditana)
GCTTATGAGTGACTCCATGCAGGCGTGACACTTGAATGAAATTTTTCTTT
CCGATATCTTCTCAATTTGACATGGCTTCAAGCGAATACGTGTTGAGCAA
TAAGATTGGGGAGAGATTGAGGGAGCGCGTCACGCCGGATTACGACAGAG
AGCTAAGCGAGAAGCTGAGGCGAGGTGGGTGGGGCCGGAGACCTGGAGAG
CTCCCGAACGAGGACGGCGCTGCCGGATGGTGAGACTTGAGCACCACGCG
CAGCCTCGACGCTCTACGGACACGAACAAAGCTTCATAATAAGTGACCCA
ACAGGTAGAGGGGCATAAGGGCATAGAATGCGTAGAGAGTAAATCTCGGT
GAATGTCACGGAAGTCGCGTGAAGCAAAAAGGCGACGCTCGAGATGCGAA
TCGTTGTGAGGCGAGAGCGAGAAGAGCGAGAACAGAACTACTAAACGGCA
ACTGGAAGCTCACTTAATTCACCGCTTGCGAGAGGGCTTTGCGTCTACTG
TCGCGTTGCTTGCAAGTTTACCGCGCGATGACGGTCTTTTGAGCGACAAG
TGAAGGTGGCCTTTCGTACGCGGCTCTTGCCGAAGGGTCGGTCGTGAGCA
CGCCTCGTACTACGTAGCATGACGGGCACTCGGAGTGAAGGAATGGCTTA
TTCGTGGGCTCACTCGGTTTTTCGACAGCATGCAACTTCTCTAGGCCTTC
GTTACTCAATTCACTCTCTTCTACCCTGATAGGACAAAAGGCCTGGTCTC
GAATAGCCAAGGCAACAAGGACGTCCTCTTTGAAGCTGATAATGATGCGC
TCGGTCGGCTTCATTAGTAGCCGCACTGTATCACAGACCTCATCATTTTC
TTCTTCGCCGCCGGCCCTTTATAGGCTTATGGATTCCCGCTCTTGTAAGT
CGTCTCTTTCCTGTTGTGTGGCTCTTCGTCCGTTTCACCTACTCCGTGCG
TGCTTACTCTCTCCTCAAGTCCTCCCAAGCCATTTTTTCTTTCTATAAGA
GTCAAGCTTCTTCCCATGCGCAAGAACTTGAACCACGCGAACACTACCTG
GAGATAATAACGTGATTACATTTTTTTTTCCTTTTCCGTAATCCTGACAT
GCGTAAATTTTCAGTCTCACGCACGGCAGCTGTGGGGGCCAAAATTAAAG
TGGAGAACCCCGTCGTGGACCTGGATGGGGACGAGATGACTCGCGTGATC
TGGAAACAGATCAAAGACAAGCTTATATTACCGTACTTGGACTTGAAGAT
CGAATACTATGACCTAGGCCTGCCAAATCGTGATAAGACGAACGACCAGG
TGACCGTGGACGCTGCTAACGCTATCAAGAAATTCAACGTGGGGATTAAA
TGCGCAACCATCACGCCGGATGAACAGCGTGTGGAGGAGTTCAAGCTGAA
GGAAATGTGGCGGTCCCCAAATGGGACCATCCGCAACATCTTGAATGGCA
CCGTCTTCCGAGAGCCCATCGTTATCAGCAACATTCCCCGTATCATCCCT
GGCTGGGTGAAGCCGATAGTCGTGGGGCGCCATGCATTCGGGGATCAGTA
CCGGGCCACCGATTTCGTGGTAGACAAGCCAGGCAAGTTCGAAATGACCT
TCACATCCACTGATGGGACCGAAAAAAAAACATGGAATGTCTTCGATTTC
AAGGGCGCAGGTGTGGGCATGGCCATGTACAACACCGACGAGGTACGTTA
AGTCGCGCTGTCTCCCTAAAGTTGGTGAGATTGGCTTAGTTGGAACTTAA
TATCATATTTAGCATTACGACATCACCCTCCACCCTGTTGCTGGCGGCGC
ACTCACCCTTCCCCGTTCCGTCGCCTTCCTCTTTTTGCAGTCCATCCGCG
GTTTTGCCCACTCGTGCTTCGCGTACGCGCTAATGAAAGGCTGGCCGTTA
TTTTTAAGCACGAAGAACACTATACTGAAGAAATACGACGGGCGATTCAA
AGATATTTTTGAGGAGATCTACGAGAAAGAGTATAAAGCTCAATATGAGG
CGATGGGCATAACCTACACACACCGACTCATCGACGATATGGTAGCGCAG
GTGCTCAAAAGCGAGGGTGGCGTGGTGTGGGCTTGCAAGAATTATGACGG
TGATGTACAGTCCGATATTGTTGCTCAGGGCTATGGCTCACTGGGCCTTA
TGACCTCGGTGTTGATCACACCCGACGGTAAGACGGTGGAGTCCGAGGCA
GCACACGGCACTGTCACGCGACATTGGCGCGAGTACCAGAAAGGCAAGCC
TACCAGTACCAATCCTATCGCCAGCATTTTCGCATGGACGCGTGGACTGC
AGCATCGAGCTAAGCTCGACAACAACCCTATACTCACGAAGTTCTCCCTT
GACATGGAGGCCGCCGTGATAAAGACGGTGGAGAAAGGCTTCATGACAAA
GGATCTGGCCATTTGCGTGCACGGCTGGACTGTGAGTCCGGATAAATACC
TTACAACTGACGCATTCCTTGATAAAGTCAAGCTCACGTACGAGAATCTT
GTTCTGTGAAAGAATTGACCAGTAAGAGAAAGCGCGAAATGTACTCCCCA
AGTCAAGTCTTCCGAGCATTCAAACCGTCCTTTTTCGGAAGCGATTTACT
CGTGGAAGAGCAGAGACCGCGAGGATTGCTTTCTTATGTCGTAGCCAGAT
GGACACCGGATCTCATTTAAAATAGAAGAGAGTTGTTGGCTAAGGGTTTC
CACCAGACACTTTGTAACGGGATTCATCGAGAAAGATACAGCTATAGAGA
CGCCGACCTATGAACCGGCTTAATCGAGGAAGGATATCTTTCGAGAGTAA
CTTAAGGGTCGCATTTTCCCCCATAGTTGTCCACCAAAATTTAAACGTGA
TATCTAGGATCTGTCATTTCGTTTAATGGTACATTATTTTGTAATTGACT
TCTGGAGGACAACTGCTGCTGCAAGAATTGCTTATGTCGATCGCCTGTCC
GAAACGAGATCCTCCTGAAAAGATAATCCCATTTCTCTGGTCCAATCAGG
AAGTATACACAGCCCTGCCATCTAAGATACGAGCACATCATGCCAATGGG
ACACCAAAGAAAGTCACGGACGGATCGCAAAGTAGGGACAGG back to topCoding sequence (CDS) from alignment at CM002456.1:778855..781946- >rna939 ID=rna939|Name=rna939|organism=Nannochloropsis gaditana|type=CDS|length=4050bp|location=Sequence derived from alignment at CM002456.1:778855..781946- (Nannochloropsis gaditana)
TCCATCCGCGGTTTTGCCCACTCGTGCTTCGCGTACGCGCTAATGAAAGG
CTGGCCGTTATTTTTAAGCACGAAGAACACTATACTGAAGAAATACGACG
GGCGATTCAAAGATATTTTTGAGGAGATCTACGAGAAAGAGTATAAAGCT
CAATATGAGGCGATGGGCATAACCTACACACACCGACTCATCGACGATAT
GGTAGCGCAGGTGCTCAAAAGCGAGGGTGGCGTGGTGTGGGCTTGCAAGA
ATTATGACGGTGATGTACAGTCCGATATTGTTGCTCAGGGCTATGGCTCA
CTGGGCCTTATGACCTCGGTGTTGATCACACCCGACGGTAAGACGGTGGA
GTCCGAGGCAGCACACGGCACTGTCACGCGACATTGGCGCGAGTACCAGA
AAGGCAAGCCTACCAGTACCAATCCTATCGCCAGCATTTTCGCATGGACG
CGTGGACTGCAGCATCGAGCTAAGCTCGACAACAACCCTATACTCACGAA
GTTCTCCCTTGACATGGAGGCCGCCGTGATAAAGACGGTGGAGAAAGGCT
TCATGACAAAGGATCTGGCCATTTGCGTGCACGGCTGGACTGTGAGTCCG
GATAAATACCTTACAACTGACGCATTCCTTGATAAAGTCAAGCTCACGTA
CGAGAATCTTGTTCTGTGATCTCACGCACGGCAGCTGTGGGGGCCAAAAT
TAAAGTGGAGAACCCCGTCGTGGACCTGGATGGGGACGAGATGACTCGCG
TGATCTGGAAACAGATCAAAGACAAGCTTATATTACCGTACTTGGACTTG
AAGATCGAATACTATGACCTAGGCCTGCCAAATCGTGATAAGACGAACGA
CCAGGTGACCGTGGACGCTGCTAACGCTATCAAGAAATTCAACGTGGGGA
TTAAATGCGCAACCATCACGCCGGATGAACAGCGTGTGGAGGAGTTCAAG
CTGAAGGAAATGTGGCGGTCCCCAAATGGGACCATCCGCAACATCTTGAA
TGGCACCGTCTTCCGAGAGCCCATCGTTATCAGCAACATTCCCCGTATCA
TCCCTGGCTGGGTGAAGCCGATAGTCGTGGGGCGCCATGCATTCGGGGAT
CAGTACCGGGCCACCGATTTCGTGGTAGACAAGCCAGGCAAGTTCGAAAT
GACCTTCACATCCACTGATGGGACCGAAAAAAAAACATGGAATGTCTTCG
ATTTCAAGGGCGCAGGTGTGGGCATGGCCATGTACAACACCGACGAGATG
ATGCGCTCGGTCGGCTTCATTAGTAGCCGCACTGTATCACAGACCTCATC
ATTTTCTTCTTCGCCGCCGGCCCTTTATAGGCTTATGGATTCCCGCTCTT
TCCATCCGCGGTTTTGCCCACTCGTGCTTCGCGTACGCGCTAATGAAAGG
CTGGCCGTTATTTTTAAGCACGAAGAACACTATACTGAAGAAATACGACG
GGCGATTCAAAGATATTTTTGAGGAGATCTACGAGAAAGAGTATAAAGCT
CAATATGAGGCGATGGGCATAACCTACACACACCGACTCATCGACGATAT
GGTAGCGCAGGTGCTCAAAAGCGAGGGTGGCGTGGTGTGGGCTTGCAAGA
ATTATGACGGTGATGTACAGTCCGATATTGTTGCTCAGGGCTATGGCTCA
CTGGGCCTTATGACCTCGGTGTTGATCACACCCGACGGTAAGACGGTGGA
GTCCGAGGCAGCACACGGCACTGTCACGCGACATTGGCGCGAGTACCAGA
AAGGCAAGCCTACCAGTACCAATCCTATCGCCAGCATTTTCGCATGGACG
CGTGGACTGCAGCATCGAGCTAAGCTCGACAACAACCCTATACTCACGAA
GTTCTCCCTTGACATGGAGGCCGCCGTGATAAAGACGGTGGAGAAAGGCT
TCATGACAAAGGATCTGGCCATTTGCGTGCACGGCTGGACTGTGAGTCCG
GATAAATACCTTACAACTGACGCATTCCTTGATAAAGTCAAGCTCACGTA
CGAGAATCTTGTTCTGTGATCTCACGCACGGCAGCTGTGGGGGCCAAAAT
TAAAGTGGAGAACCCCGTCGTGGACCTGGATGGGGACGAGATGACTCGCG
TGATCTGGAAACAGATCAAAGACAAGCTTATATTACCGTACTTGGACTTG
AAGATCGAATACTATGACCTAGGCCTGCCAAATCGTGATAAGACGAACGA
CCAGGTGACCGTGGACGCTGCTAACGCTATCAAGAAATTCAACGTGGGGA
TTAAATGCGCAACCATCACGCCGGATGAACAGCGTGTGGAGGAGTTCAAG
CTGAAGGAAATGTGGCGGTCCCCAAATGGGACCATCCGCAACATCTTGAA
TGGCACCGTCTTCCGAGAGCCCATCGTTATCAGCAACATTCCCCGTATCA
TCCCTGGCTGGGTGAAGCCGATAGTCGTGGGGCGCCATGCATTCGGGGAT
CAGTACCGGGCCACCGATTTCGTGGTAGACAAGCCAGGCAAGTTCGAAAT
GACCTTCACATCCACTGATGGGACCGAAAAAAAAACATGGAATGTCTTCG
ATTTCAAGGGCGCAGGTGTGGGCATGGCCATGTACAACACCGACGAGATG
ATGCGCTCGGTCGGCTTCATTAGTAGCCGCACTGTATCACAGACCTCATC
ATTTTCTTCTTCGCCGCCGGCCCTTTATAGGCTTATGGATTCCCGCTCTT
TCCATCCGCGGTTTTGCCCACTCGTGCTTCGCGTACGCGCTAATGAAAGG
CTGGCCGTTATTTTTAAGCACGAAGAACACTATACTGAAGAAATACGACG
GGCGATTCAAAGATATTTTTGAGGAGATCTACGAGAAAGAGTATAAAGCT
CAATATGAGGCGATGGGCATAACCTACACACACCGACTCATCGACGATAT
GGTAGCGCAGGTGCTCAAAAGCGAGGGTGGCGTGGTGTGGGCTTGCAAGA
ATTATGACGGTGATGTACAGTCCGATATTGTTGCTCAGGGCTATGGCTCA
CTGGGCCTTATGACCTCGGTGTTGATCACACCCGACGGTAAGACGGTGGA
GTCCGAGGCAGCACACGGCACTGTCACGCGACATTGGCGCGAGTACCAGA
AAGGCAAGCCTACCAGTACCAATCCTATCGCCAGCATTTTCGCATGGACG
CGTGGACTGCAGCATCGAGCTAAGCTCGACAACAACCCTATACTCACGAA
GTTCTCCCTTGACATGGAGGCCGCCGTGATAAAGACGGTGGAGAAAGGCT
TCATGACAAAGGATCTGGCCATTTGCGTGCACGGCTGGACTGTGAGTCCG
GATAAATACCTTACAACTGACGCATTCCTTGATAAAGTCAAGCTCACGTA
CGAGAATCTTGTTCTGTGATCTCACGCACGGCAGCTGTGGGGGCCAAAAT
TAAAGTGGAGAACCCCGTCGTGGACCTGGATGGGGACGAGATGACTCGCG
TGATCTGGAAACAGATCAAAGACAAGCTTATATTACCGTACTTGGACTTG
AAGATCGAATACTATGACCTAGGCCTGCCAAATCGTGATAAGACGAACGA
CCAGGTGACCGTGGACGCTGCTAACGCTATCAAGAAATTCAACGTGGGGA
TTAAATGCGCAACCATCACGCCGGATGAACAGCGTGTGGAGGAGTTCAAG
CTGAAGGAAATGTGGCGGTCCCCAAATGGGACCATCCGCAACATCTTGAA
TGGCACCGTCTTCCGAGAGCCCATCGTTATCAGCAACATTCCCCGTATCA
TCCCTGGCTGGGTGAAGCCGATAGTCGTGGGGCGCCATGCATTCGGGGAT
CAGTACCGGGCCACCGATTTCGTGGTAGACAAGCCAGGCAAGTTCGAAAT
GACCTTCACATCCACTGATGGGACCGAAAAAAAAACATGGAATGTCTTCG
ATTTCAAGGGCGCAGGTGTGGGCATGGCCATGTACAACACCGACGAGATG
ATGCGCTCGGTCGGCTTCATTAGTAGCCGCACTGTATCACAGACCTCATC
ATTTTCTTCTTCGCCGCCGGCCCTTTATAGGCTTATGGATTCCCGCTCTT back to top
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