rna9388, rna9388 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9388
Unique Name	rna9388
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2441
Alignment location	KK037253.1:130902..133131 -

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent protease la
Orig transcript id	gnl\|cribi\|Naga_100233g7.3725.mrna
Orig protein id	gnl\|cribi\|Naga_100233g7.3725
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:130902..133131 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100233g7	gene9107	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21310.1	cds9358	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9388	rna9388-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:130902..133131-
coding sequence from alignment at KK037253.1:130902..133131-

mRNA sequence

>rna9388 ID=rna9388|Name=rna9388|organism=Nannochloropsis gaditana|type=mRNA|length=2441bp
GCAGGCTCGGTATATTACGATATAGGCTCCCTGAGATAGGCTCCCACTGT
CATCTGGCACGTTCACTTAAGTACTTTTCCTGTCTCCTAAATCCTCACAA
GCGCAGCATTGCCTCAGCTTCTTCCCTTGGACCGGCTTTGTTCCTACCAG
CGAGGCAGAGTAGTTGGCTCGACGCTTCCTCTCTCAGAAAAATGCCTAAG
TTAACGAAGCGAGAGCAAGAGAGGGCCCTGGCACAGGCCGTTGCCGCTGA
TAACAATGGAGATGGAGCTTCCTCTCCGCCATCCGCGGCTCCCACTGCCT
CCCAGTCTCATTTCACGGGCAGATCCCTGCACCTCCCTGCGGCCTCGCAC
CTCTCAGCCCAGGTCACGGGGGCTTCTTCGCCCTTCGACAACCAGTTTTC
GACGGAAGAAATTGCCAGCTTGATGGCTGACACGGCTTCCTTCGATGTGA
ACGCGGGAGGCGAAACCTCCACCCCTGTCCTTCCTACCTCCAGGGCAGGG
GCAGGAGGAAGGAGGTTGGGATGGCCGGGTCCGGGGGAGGATGCCGGAAA
CGGGGTGGAAGATGCGAAGAAATCTACGGTGCCTTTGATCATGGACGGTA
TGGGATACGTCGGCAATGGAGGAGCTGAGGCGGGAGGGTTCAAGAGGAAG
GCAGAGGAGGCGTTTGGTGGAAGAGGAGGAGGAGGAGGAGAAAGGGAGGG
CGACCCAGGGGCAAATGCGTGGGAGGAACTGAGCCAGCATCCCAGATCTC
AAGCTCCTGTCGTCAACGGTCGCGTGCGTAAGACACCAGTCCGCCCCACG
GTGGGCGGCAGCAAATGCGGCGCGGGGGCCGCTACCCCCGGCTCAGCGGA
TAAGTCTTCCAAGGGCTTGCGGCACTTCAGTCTTCAGGTGTGTCGGAAGG
TGGAGGAGAAAGGCCGCACCAACTACAATGAGGTGGCGGATGAATTGGTG
GCAGAGGTGCTGGCGCAACGCGCCGAGCCCTCGGGGACGGGTCCGGTGGA
GAAATACGACGAGAAAAATATCCGGCGCCGAGTCTACGACGCTCTGAACG
TGCTCATGGCCATGGACATCATCAGCAAGGAGAAGAAGGAGATCCGATGG
AAAGGCTTGCCGTCCAATGCCCAGCATGACCTGGAGGTCCTGCGCCGGGA
CAAGCGCCGGCTGGAGAGCAGCCTTGCCAAGAAGCGGGAGCTCCTGCAGG
AGCTCATTCTCCAGCGCATCGCTTTTCAACGCTTGATGCGTCGGAACAGC
GAAAGGGAAGAAATGATGGCCACGACCACGTCAAGTGCAGCGGCAGCAGC
AGCGGCGGCGGAGGCGGCTGCCGCCGCTGCCAACGCCTCGGCCGGGACGG
GCTCCTCAGCCAGGTCCTCTCCCTCTTCTTCCACAGCGACCGCGCGTGCT
GCTGCGGCCGCCGCCACTGCCGCCGTCCAAGCAGCTGAAGACGAGGAGCA
ACGGCGTGTGCCCTTACCCTTCATCATTGTAAACACGCACTCCCAGACCC
TGATCCATTGCGAGATGGCTGAAGACCGGTCCGACGTGTTTTTTAATTTC
TCCGCCCCCTTCGAGTTGGCAGACGACAACGAGATATTGAGGCGGATGCA
GCTCCAGAGGGCCTCGGTGGAGGACGTGGAGGCCTTCGTTCCCGAGCATT
TGAAGGCCTATGTGTCCGACTCGGTGTATGAGTAGGGGAAGGGGGTGGGC
CTCGGAAGGACGCGCGCGGGATCGAGAGCCGGAGGGGAAATGGCCCGGCT
GTGATCAGGAGCGGCAGTGAGGTATCAGAGGTGGAACGGAAAGGGAAGAG
TGGGCGCGGTAACGTCAAGGGGAAGCTTGGCAGCGGGCGGTAGCGCGCTC
TGGTCTCTTGGCTAACGCACGTTGGGGGTGAGTCGCCGGACGAGGTAGCG
GGGGGGGGGAGGGAGGAAGGGGGGTTGGTCGAGGAGGGATGCCGATGGGG
TGGGAGCAGGCAAAGGCGTCGATGGCAGGACAATGTAAGGAAGGAAGAAG
GGTCTCGGGAGGGGGAGAAAGGCAGTGCAAAGGAGGTTGTACTGTGCTGA
AAGAGGTGCTGTGCAAAGGAAATGGATGATGAGTATGAAGTGAAGGGATA
TGAAATGAGAGAAGTGAAGGACCGTTTATGAATCCGAAAGGACGGAGAAG
AAAGATAACGCCGGAGACCAGACAGCCACCGGTAACGTGTAAAGTAGAGC
AAAGCACCGAGGGTCGAGCAGGTAGGAAGGGAGGTAGCTAGGAAGGCACA
CATGGCTTTCCTGCCTCTGGTGGGCTGAGGCCAAAGCAACCCGCCCGAGT
GAGAAGTCGGGCCTCCAAGGCCCGGCGAATAACAAATCAAGAATGGACGT
GACAGCCACGCGGACAAGAATTGACCTTTGTTCTTCGCGGAAAGATCAGT
CTCATAATATTCATGAAAATGCCGAAGGGGCGCCACATGTT

protein sequence of rna9388

>rna9388-protein ID=rna9388-protein|Name=rna9388|organism=Nannochloropsis gaditana|type=polypeptide|length=692bp
MPRRGLRSESGDGRREQVDGLEEESHRRIRSHSRIAGASRGVRRKANRQL
SEEVSASEALPGWSLPPPSCLHRSARWHLLGPTSRSAKKPKRGPGAWRHT
SGSQGSGLAYSPSSSSSGALGIQVSSRPGLALEGREEEGTGNDAARGAAS
RTRFAFAGDGEEEEEGEQEEDSGGGGGGERGGDGICDAQAVSINSGCLGG
FPIGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALS
WVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGP
SAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAAR
QGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGRG
YQARYEHRLREVAGLGLAASLACSHVKGRVQWVECCATTGRGEWHITGNV
LEGTRGSVLVARTWVRRNAAAIVARLGGKTSVQVELCALHGLGPAWRLRG
KETGAVGPALAAGTPSLPLEPSRRSNGKHPLSPSPGTLASGDPALLPPPQ
LDLHIHMPGTDVAKDVSINGAAAAVSMIAVMTGLAVRPGKPRDLYLPPLP
RDRLVSPSLPALPPSLSRRCRSGRNHPVGRVLALGAGERGGGQHGHRREH
LAACPAHGKARREGGGEKRVEKWGGQTSPEEMGGGGFSEGRR

mRNA from alignment at KK037253.1:130902..133131-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9388 ID=rna9388|Name=rna9388|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp|location=Sequence derived from alignment at KK037253.1:130902..133131- (Nannochloropsis gaditana)
AGACACTATAATCCCGTATTGCATCTCTGCTTCTTTGGCCCGTGGCTGAA
AAGGGGCCTGTCTAACAACCTTTTGGCCCTCATAAACCCTCACACAGGTC
TGTCGTGGTGTTATCGGTATCTCTAGGGCTCCGGACCAGAGCTTGAGATT
CATGCCTCGGCGGGGGTTGCGCAGCGAGAGCGGGGACGGGAGGCGCGAGC
AGGTCGACGGCCTGGAGGAAGAAAGCCATCGGCGCATCAGGTCGCACAGC
AGAATTGCCGGCGCCAGTCGCGGCGTACGAAGGAAAGCCAACCGGCAGCT
TTCTGAAGAAGTGTCGGCTAGCGAAGCCCTGCCCGGGTGGTCCCTGCCCC
CCCCCTCCTGCCTGCACCGTTCTGCGCGCTGGCACCTCCTCGGGCCGACC
TCGAGGTCGGCCAAGAAGCCAAAGCGAGGGCCTGGTGCCTGGCGGCACAC
CTCAGGAAGCCAGGGATCTGGGTTGGCCTACTCGCCCTCTTCTTCCTCCT
CGGGCGCTCTTGGGATTCAGGTGTCAAGCCGACCTGGGCTCGCGCTTGAA
GGGCGTGAAGAGGAAGGAACTGGCAACGACGCGGCGAGAGGGGCCGCCAG
CAGGACGAGATTTGCCTTTGCGGGGGACGGGGAGGAGGAGGAGGAGGGAG
AGCAGGAGGAGGACAGCGGAGGAGGAGGGGGAGGGGAGCGAGGTGGGGAC
GGGATTTGCGACGCGCAGGCGGTGAGCATCAACAGCGGCTGCCTGGGCGG
TTTTCCCATCGGGGTGGGCTGTGCCGTGTCGGGGGAAGGGGGCCTAGCCT
TCGCGGTCCAGAGCGAGGCCACCTCTCCGGGCACGGGCGAGCTGATCTTG
ACGGGCAAGATCGGGAAGTCGATGGCCGAGAGCTGCATGGTGGCGCTGAG
CTGGGTGAAGGCGAAGAAGCGAGATTTGTGCCTGTGGATGAGCCTGGAGG
GGGAGGATGGGGAAGGGAGCGGGTGTCTGGTCGACCTGCACCGCCCGGAC
CTGGACGTGCACGTGAACTTTCCTTCCTGCGAGGCGGAGAAGAATGGGCC
GTCCGCGGGCGCCACGGTCGCGACCAGCCTGGTTTTGATGATGACGGGTG
CGCAGCTCTTGCCCAACATCGCCATCTCGGGGGAGATCAATCTGAAGGGA
GACCTGCTCCCCATCGGGAACGTGAAGGAAAAAGTGGCGGCGGCGGCCCG
GCAGGGCATCACGCACATTGTCCTCTCCTCCGCCAACGTCAAGCAGTTCC
GGCGCCTGCCCGCCAGGATCCGCAACGCGGTCAAGGCGCTCAAGGCCAAC
CACATCGTGGAGGTCCTCAAGCACGCGGTGTTGCCCCCCGGGGGGAGAGG
CTACCAGGCCCGGTACGAGCACCGGCTGCGGGAGGTGGCGGGCCTCGGGC
TGGCCGCCTCGCTGGCCTGCTCCCACGTGAAGGGACGGGTCCAGTGGGTG
GAGTGCTGCGCCACCACGGGCCGGGGTGAGTGGCACATCACGGGGAATGT
TCTCGAAGGAACGCGGGGCTCGGTCCTGGTCGCCCGTACCTGGGTGCGTC
GGAACGCCGCCGCCATCGTCGCGCGCTTGGGGGGGAAGACGAGCGTGCAG
GTGGAGCTGTGCGCCCTCCACGGGCTGGGGCCGGCCTGGCGGCTGCGTGG
CAAAGAAACCGGGGCGGTGGGCCCAGCACTGGCCGCGGGAACTCCTTCCC
TGCCCCTCGAGCCCAGCCGACGCAGCAACGGGAAGCACCCGCTCTCCCCC
TCCCCCGGCACCCTGGCCTCAGGGGACCCCGCCCTCCTTCCCCCCCCGCA
ACTTGACCTACACATCCACATGCCCGGCACCGACGTGGCCAAGGACGTCT
CCATTAACGGCGCGGCGGCGGCTGTCAGCATGATCGCCGTCATGACGGGC
CTGGCTGTGCGCCCCGGTAAGCCCCGGGATCTCTACCTTCCTCCCCTCCC
GCGTGATCGACTCGTTTCACCGTCCCTCCCCGCCCTCCCTCCTTCCCTCT
CTAGACGTTGCCGTTCTGGGCGAAATCACCCTGTCGGGCGTGTTCTGGCC
CTTGGAGCAGGTGAACGAGGCGGAGGTCAACACGGCCATCGACGCGAACA
TCTCGCTGCTTGTCCTGCCCATGGTAAGGCGCGAAGGGAGGGAGGAGGCG
AAAAGAGGGTGGAGAAATGGGGAGGACAGACTTCTCCGGAGGAGATGGGG
GGGGGGGGATTTAGTGAGGGGAGAAGATGA

Coding sequence (CDS) from alignment at KK037253.1:130902..133131-

>rna9388 ID=rna9388|Name=rna9388|organism=Nannochloropsis gaditana|type=CDS|length=2079bp|location=Sequence derived from alignment at KK037253.1:130902..133131- (Nannochloropsis gaditana)
ATGCCTCGGCGGGGGTTGCGCAGCGAGAGCGGGGACGGGAGGCGCGAGCA
GGTCGACGGCCTGGAGGAAGAAAGCCATCGGCGCATCAGGTCGCACAGCA
GAATTGCCGGCGCCAGTCGCGGCGTACGAAGGAAAGCCAACCGGCAGCTT
TCTGAAGAAGTGTCGGCTAGCGAAGCCCTGCCCGGGTGGTCCCTGCCCCC
CCCCTCCTGCCTGCACCGTTCTGCGCGCTGGCACCTCCTCGGGCCGACCT
CGAGGTCGGCCAAGAAGCCAAAGCGAGGGCCTGGTGCCTGGCGGCACACC
TCAGGAAGCCAGGGATCTGGGTTGGCCTACTCGCCCTCTTCTTCCTCCTC
GGGCGCTCTTGGGATTCAGGTGTCAAGCCGACCTGGGCTCGCGCTTGAAG
GGCGTGAAGAGGAAGGAACTGGCAACGACGCGGCGAGAGGGGCCGCCAGC
AGGACGAGATTTGCCTTTGCGGGGGACGGGGAGGAGGAGGAGGAGGGAGA
GCAGGAGGAGGACAGCGGAGGAGGAGGGGGAGGGGAGCGAGGTGGGGACG
GGATTTGCGACGCGCAGGCGGTGAGCATCAACAGCGGCTGCCTGGGCGGT
TTTCCCATCGGGGTGGGCTGTGCCGTGTCGGGGGAAGGGGGCCTAGCCTT
CGCGGTCCAGAGCGAGGCCACCTCTCCGGGCACGGGCGAGCTGATCTTGA
CGGGCAAGATCGGGAAGTCGATGGCCGAGAGCTGCATGGTGGCGCTGAGC
TGGGTGAAGGCGAAGAAGCGAGATTTGTGCCTGTGGATGAGCCTGGAGGG
GGAGGATGGGGAAGGGAGCGGGTGTCTGGTCGACCTGCACCGCCCGGACC
TGGACGTGCACGTGAACTTTCCTTCCTGCGAGGCGGAGAAGAATGGGCCG
TCCGCGGGCGCCACGGTCGCGACCAGCCTGGTTTTGATGATGACGGGTGC
GCAGCTCTTGCCCAACATCGCCATCTCGGGGGAGATCAATCTGAAGGGAG
ACCTGCTCCCCATCGGGAACGTGAAGGAAAAAGTGGCGGCGGCGGCCCGG
CAGGGCATCACGCACATTGTCCTCTCCTCCGCCAACGTCAAGCAGTTCCG
GCGCCTGCCCGCCAGGATCCGCAACGCGGTCAAGGCGCTCAAGGCCAACC
ACATCGTGGAGGTCCTCAAGCACGCGGTGTTGCCCCCCGGGGGGAGAGGC
TACCAGGCCCGGTACGAGCACCGGCTGCGGGAGGTGGCGGGCCTCGGGCT
GGCCGCCTCGCTGGCCTGCTCCCACGTGAAGGGACGGGTCCAGTGGGTGG
AGTGCTGCGCCACCACGGGCCGGGGTGAGTGGCACATCACGGGGAATGTT
CTCGAAGGAACGCGGGGCTCGGTCCTGGTCGCCCGTACCTGGGTGCGTCG
GAACGCCGCCGCCATCGTCGCGCGCTTGGGGGGGAAGACGAGCGTGCAGG
TGGAGCTGTGCGCCCTCCACGGGCTGGGGCCGGCCTGGCGGCTGCGTGGC
AAAGAAACCGGGGCGGTGGGCCCAGCACTGGCCGCGGGAACTCCTTCCCT
GCCCCTCGAGCCCAGCCGACGCAGCAACGGGAAGCACCCGCTCTCCCCCT
CCCCCGGCACCCTGGCCTCAGGGGACCCCGCCCTCCTTCCCCCCCCGCAA
CTTGACCTACACATCCACATGCCCGGCACCGACGTGGCCAAGGACGTCTC
CATTAACGGCGCGGCGGCGGCTGTCAGCATGATCGCCGTCATGACGGGCC
TGGCTGTGCGCCCCGGTAAGCCCCGGGATCTCTACCTTCCTCCCCTCCCG
CGTGATCGACTCGTTTCACCGTCCCTCCCCGCCCTCCCTCCTTCCCTCTC
TAGACGTTGCCGTTCTGGGCGAAATCACCCTGTCGGGCGTGTTCTGGCCC
TTGGAGCAGGTGAACGAGGCGGAGGTCAACACGGCCATCGACGCGAACAT
CTCGCTGCTTGTCCTGCCCATGGTAAGGCGCGAAGGGAGGGAGGAGGCGA
AAAGAGGGTGGAGAAATGGGGAGGACAGACTTCTCCGGAGGAGATGGGGG
GGGGGGGATTTAGTGAGGGGAGAAGATGA

Synonyms

Publications