EWM21310.1, cds9358 (CDS) Nannochloropsis gaditana

Overview
NameEWM21310.1
Unique Namecds9358
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:130902..132980 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21310.1
Productatp-dependent protease la
Orig transcript idgnl|cribi|Naga_100233g7.3725.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:130902..132980 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004252serine-type endopeptidase activity
GO:0004176ATP-dependent peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030163protein catabolic process
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR027065Lon_Prtase
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR008269Pept_S16_C
Homology
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|585101492|gb|EWM21310.1| (atp-dependent protease la [Nannochloropsis gaditana])

HSP 1 Score: 1368.21 bits (3540), Expect = 0.000e+0
Identity = 692/692 (100.00%), Postives = 692/692 (100.00%), Query Frame = 0
Query:    1 MPRRGLRSESGDGRREQVDGLEEESHRRIRSHSRIAGASRGVRRKANRQLSEEVSASEALPGWSLPPPSCLHRSARWHLLGPTSRSAKKPKRGPGAWRHTSGSQGSGLAYSPSSSSSGALGIQVSSRPGLALEGREEEGTGNDAARGAASRTRFAFAGDGEEEEEGEQEEDSGGGGGGERGGDGICDAQAVSINSGCLGGFPIGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGRGYQARYEHRLREVAGLGLAASLACSHVKGRVQWVECCATTGRGEWHITGNVLEGTRGSVLVARTWVRRNAAAIVARLGGKTSVQVELCALHGLGPAWRLRGKETGAVGPALAAGTPSLPLEPSRRSNGKHPLSPSPGTLASGDPALLPPPQLDLHIHMPGTDVAKDVSINGAAAAVSMIAVMTGLAVRPGKPRDLYLPPLPRDRLVSPSLPALPPSLSRRCRSGRNHPVGRVLALGAGERGGGQHGHRREHLAACPAHGKARREGGGEKRVEKWGGQTSPEEMGGGGFSEGRR 692
            MPRRGLRSESGDGRREQVDGLEEESHRRIRSHSRIAGASRGVRRKANRQLSEEVSASEALPGWSLPPPSCLHRSARWHLLGPTSRSAKKPKRGPGAWRHTSGSQGSGLAYSPSSSSSGALGIQVSSRPGLALEGREEEGTGNDAARGAASRTRFAFAGDGEEEEEGEQEEDSGGGGGGERGGDGICDAQAVSINSGCLGGFPIGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGRGYQARYEHRLREVAGLGLAASLACSHVKGRVQWVECCATTGRGEWHITGNVLEGTRGSVLVARTWVRRNAAAIVARLGGKTSVQVELCALHGLGPAWRLRGKETGAVGPALAAGTPSLPLEPSRRSNGKHPLSPSPGTLASGDPALLPPPQLDLHIHMPGTDVAKDVSINGAAAAVSMIAVMTGLAVRPGKPRDLYLPPLPRDRLVSPSLPALPPSLSRRCRSGRNHPVGRVLALGAGERGGGQHGHRREHLAACPAHGKARREGGGEKRVEKWGGQTSPEEMGGGGFSEGRR
Sbjct:    1 MPRRGLRSESGDGRREQVDGLEEESHRRIRSHSRIAGASRGVRRKANRQLSEEVSASEALPGWSLPPPSCLHRSARWHLLGPTSRSAKKPKRGPGAWRHTSGSQGSGLAYSPSSSSSGALGIQVSSRPGLALEGREEEGTGNDAARGAASRTRFAFAGDGEEEEEGEQEEDSGGGGGGERGGDGICDAQAVSINSGCLGGFPIGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGRGYQARYEHRLREVAGLGLAASLACSHVKGRVQWVECCATTGRGEWHITGNVLEGTRGSVLVARTWVRRNAAAIVARLGGKTSVQVELCALHGLGPAWRLRGKETGAVGPALAAGTPSLPLEPSRRSNGKHPLSPSPGTLASGDPALLPPPQLDLHIHMPGTDVAKDVSINGAAAAVSMIAVMTGLAVRPGKPRDLYLPPLPRDRLVSPSLPALPPSLSRRCRSGRNHPVGRVLALGAGERGGGQHGHRREHLAACPAHGKARREGGGEKRVEKWGGQTSPEEMGGGGFSEGRR 692          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|1054597625|ref|WP_066365875.1| (endopeptidase La [Bacillus fumarioli])

HSP 1 Score: 129.413 bits (324), Expect = 2.060e-27
Identity = 72/197 (36.55%), Postives = 112/197 (56.85%), Query Frame = 0
Query:  203 IGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGR 399
            +  G A +  GG    ++  + +PG G+L+LTGK+G  M ES   A S+V++K ++L              G   D H    D+H++ P     K+GPSAG T+AT+LV  +TG  +   + ++GEI L+G +LPIG +KEK  +A R G+T ++L   N K    +P  +RN ++ +  +H+ EVLKHA+L  G R
Sbjct:  595 VATGLAYTTVGGDTLQIEV-SIAPGKGKLVLTGKLGDVMKESAQAAFSYVRSKTKEL--------------GIEEDFHEK-YDIHIHVPEGAVPKDGPSAGITIATALVSALTGKPIRREVGMTGEITLRGRVLPIGGLKEKTLSAHRAGLTKVILPKENEKDIDDIPESVRNELEFVPVSHVDEVLKHALLEGGAR 775          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|874574474|gb|AKQ01587.1| (anti-sigma H sporulation factor LonB, ATP-dependent Lon protease [uncultured delta proteobacterium Rifle_16ft_4_minimus_1997])

HSP 1 Score: 119.398 bits (298), Expect = 2.949e-27
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 0
Query:  226 PGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVL 394
            PG G+LI+TGK+G  M ES   A+S+V+++  +L              G   D ++  +DVH++ P     K+GPSAG T+ATSLV  +T   + P++A++GEI L+G++LPIG +KEKV AA R GI  +++ + N K    +P  I   V+ +   H+ EVLK A++
Sbjct:    2 PGKGQLIITGKLGDVMQESAQAAMSYVRSRAEEL--------------GLERDFYQ-KVDVHIHVPEGAIPKDGPSAGITMATSLVSALTRTPVRPDLAMTGEITLRGNILPIGGLKEKVLAAHRGGIKTVLIPAENEKDIEEVPQTILKTVELVMVAHMDEVLKKALV 155          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|922864112|gb|KOO31430.1| (ATP-dependent protease la [Chrysochromulina sp. CCMP291])

HSP 1 Score: 127.102 bits (318), Expect = 3.654e-27
Identity = 74/202 (36.63%), Postives = 118/202 (58.42%), Query Frame = 0
Query:  203 IGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGRGYQAR 404
            I  G A +  GG    V++E  + G GE++LTG++G  M ES M A SW++A   +L L   +  E G  SG  +       D+H++FP+    K+GPSAG T+ T++V ++TG ++ P++A++GE+ L+G +LP+G +KEKV AA R G+  ++L + N K  R LP  +   +  +    I EVL  A+LP   +   A+
Sbjct:  333 IVAGLAYTSVGGDLLYVEAEQMA-GRGEIVLTGQLGDVMKESAMAARSWIRAHAHELGL---VGAEPGAVSGGPLGHFLNSTDLHIHFPAGAVPKDGPSAGVTITTAIVSLLTGRKVRPDLAMTGEVTLRGLVLPVGGIKEKVIAAHRGGMRTVILPAKNEKDLRELPQTVLRDMTFILVREIREVLDAALLPADAKDSAAQ 530          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|1120966842|ref|WP_073475757.1| (endopeptidase La [Desulfatibacillum alkenivorans])

HSP 1 Score: 127.872 bits (320), Expect = 8.196e-27
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 0
Query:  206 GCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVL 394
            G A +  GG   AV++  T PG GELI+TGK+G  M ES   A+S+V+++   LC+       D E        H+  LD+H++ P     K+GPSAG T+ TS+V ++TG ++  ++A++GEI L+G +LPIG +KEK+ AA R GI  I++   N K    +PAR+  AVK     H+ +VL+HA++
Sbjct:  611 GLAWTQVGGEILAVET-VTMPGKGELIVTGKLGDVMKESARAAVSYVRSRTPRLCI-------DPE-------FHK-KLDIHIHIPEGAIPKDGPSAGITMCTSIVSVLTGRKVRRDLAMTGEITLRGRILPIGGLKEKILAAHRAGIKAILIPEENEKDLADIPARVLKAVKVTPVGHMDQVLEHALV 783          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|1110486842|emb|SHJ77186.1| (ATP-dependent proteinase. Serine peptidase. MEROPS family S16 [Desulfatibacillum alkenivorans DSM 16219])

HSP 1 Score: 127.487 bits (319), Expect = 8.264e-27
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 0
Query:  206 GCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVL 394
            G A +  GG   AV++  T PG GELI+TGK+G  M ES   A+S+V+++   LC+       D E        H+  LD+H++ P     K+GPSAG T+ TS+V ++TG ++  ++A++GEI L+G +LPIG +KEK+ AA R GI  I++   N K    +PAR+  AVK     H+ +VL+HA++
Sbjct:  593 GLAWTQVGGEILAVET-VTMPGKGELIVTGKLGDVMKESARAAVSYVRSRTPRLCI-------DPE-------FHK-KLDIHIHIPEGAIPKDGPSAGITMCTSIVSVLTGRKVRRDLAMTGEITLRGRILPIGGLKEKILAAHRAGIKAILIPEENEKDLADIPARVLKAVKVTPVGHMDQVLEHALV 765          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|501641672|ref|WP_012610595.1| (endopeptidase La [Desulfatibacillum alkenivorans] >gi|218760694|gb|ACL03160.1| ATP-dependent protease La [Desulfatibacillum alkenivorans AK-01])

HSP 1 Score: 127.487 bits (319), Expect = 9.609e-27
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 0
Query:  206 GCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVL 394
            G A +  GG   AV++  T PG GELI+TGK+G  M ES   A+S+V+++   LC+       D E        H+  LD+H++ P     K+GPSAG T+ TS+V ++TG ++  ++A++GEI L+G +LPIG +KEK+ AA R GI  I++   N K    +PAR+  AVK     H+ +VL+HA++
Sbjct:  611 GLAWTQVGGEILAVET-VTMPGKGELIVTGKLGDVMKESARAAVSYVRSRTPRLCI-------DPE-------FHK-KLDIHIHIPEGAIPKDGPSAGITMCTSIVSVLTGRKVHRDLAMTGEITLRGRILPIGGLKEKILAAHRAGIKAILIPEENEKDLADIPARVLKAVKVTPVGHMDQVLEHALV 783          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|403359469|gb|EJY79397.1| (ATP-dependent protease La (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 127.102 bits (318), Expect = 1.243e-26
Identity = 78/223 (34.98%), Postives = 125/223 (56.05%), Query Frame = 0
Query:  201 FPIGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEG---EDGEGSGCLV------DLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPGGRGY-----QARYEHRL 409
            + I  G A +  GG A  +++ A  PGTG+L LTGK+G  M ES   ALSW+K     + ++ SL+    +  +    LV      +L     D+HV+FP+    K+GPSAG T+ T+LV ++T  ++  + A++GEI+L+G +LP+G +KEK  AA R GI +++L   N K    +P  +R  ++   A+ I EVL+ A+       Y     Q+ ++H+L
Sbjct:  565 YLIFQGLAYTEVGGRALLIET-AKYPGTGQLNLTGKLGDVMKESVNTALSWIKTNAGRIGVYKSLKKLRVDVADDPNHLVKEDRNAELIFKQFDLHVHFPAAAVPKDGPSAGVTITTALVSLLTNRRVKSDFAMTGEISLQGLVLPVGGIKEKTIAAHRNGIKNVILPFKNKKDIDEIPTDVRKDIQIHFAHRIEEVLELALEKTIDHKYLKEESQSIFKHKL 786          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|604297678|gb|EYU17851.1| (hypothetical protein MIMGU_mgv1a0010892mg, partial [Erythranthe guttata])

HSP 1 Score: 117.857 bits (294), Expect = 1.561e-26
Identity = 69/191 (36.13%), Postives = 111/191 (58.12%), Query Frame = 0
Query:  203 IGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAV 393
            + VG   +  GG    V++ A   G GEL LTG++G  + ES  +AL+WV+A+  +L L  ++E    EG            DVH++FP+    K+GPSAG T+ TSLV + +  ++  + A++GE+ L+G +LP+G VK+KV AA R GI  ++L   N K    +PA + ++++ L A  + +VL+ A 
Sbjct:   18 VSVGLVWTAFGGEVQFVEATAMG-GKGELHLTGQLGDVIKESAQIALTWVRARATELKLTTAVESNLLEGR-----------DVHIHFPAGAVPKDGPSAGVTLVTSLVSLFSQRRVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPERNFKDLAEVPAAVLSSLEILLAKRMEDVLEQAF 196          
BLAST of EWM21310.1 vs. NCBI_GenBank
Match: gi|1130916859|ref|WP_075685959.1| (endopeptidase La [Bacillus sp. MRMR6] >gi|1129875150|gb|OLS41504.1| endopeptidase La [Bacillus sp. MRMR6])

HSP 1 Score: 126.331 bits (316), Expect = 1.789e-26
Identity = 71/195 (36.41%), Postives = 111/195 (56.92%), Query Frame = 0
Query:  203 IGVGCAVSGEGGLAFAVQSEATSPGTGELILTGKIGKSMAESCMVALSWVKAKKRDLCLWMSLEGEDGEGSGCLVDLHRPDLDVHVNFPSCEAEKNGPSAGATVATSLVLMMTGAQLLPNIAISGEINLKGDLLPIGNVKEKVAAAARQGITHIVLSSANVKQFRRLPARIRNAVKALKANHIVEVLKHAVLPPG 397
            +  G A +  GG    ++  + SPG G+L+LTGK+G  M ES   A S++++K ++L              G   D H    D+H++ P     K+GPSAG T+AT+LV  ++G  +   + ++GEI L+G +LPIG +KEK  +A R G+T ++L   N K    +P  IRN ++ +  +H+ EVLKHA+L  G
Sbjct:  595 VATGLAYTTVGGDTLQIEV-SLSPGKGKLVLTGKLGDVMKESAQAAFSYIRSKAKEL--------------GIDQDFHEK-YDIHIHVPEGAVPKDGPSAGITIATALVSALSGKPIRREVGMTGEITLRGRVLPIGGLKEKTLSAHRAGLTKVILPKDNEKDIDDIPESIRNEMEFVLVSHVDEVLKHALLEGG 773          
The following BLAST results are available for this feature:
BLAST of EWM21310.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101492|gb|EWM21310.1|0.000e+0100.00atp-dependent protease la [Nannochloropsis gaditan... [more]
gi|1054597625|ref|WP_066365875.1|2.060e-2736.55endopeptidase La [Bacillus fumarioli][more]
gi|874574474|gb|AKQ01587.1|2.949e-2739.05anti-sigma H sporulation factor LonB, ATP-dependen... [more]
gi|922864112|gb|KOO31430.1|3.654e-2736.63ATP-dependent protease la [Chrysochromulina sp. CC... [more]
gi|1120966842|ref|WP_073475757.1|8.196e-2740.21endopeptidase La [Desulfatibacillum alkenivorans][more]
gi|1110486842|emb|SHJ77186.1|8.264e-2740.21ATP-dependent proteinase. Serine peptidase. MEROPS... [more]
gi|501641672|ref|WP_012610595.1|9.609e-2740.21endopeptidase La [Desulfatibacillum alkenivorans] ... [more]
gi|403359469|gb|EJY79397.1|1.243e-2634.98ATP-dependent protease La (macronuclear) [Oxytrich... [more]
gi|604297678|gb|EYU17851.1|1.561e-2636.13hypothetical protein MIMGU_mgv1a0010892mg, partial... [more]
gi|1130916859|ref|WP_075685959.1|1.789e-2636.41endopeptidase La [Bacillus sp. MRMR6] >gi|11298751... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9388rna9388Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications