rna9385, rna9385 (mRNA) Nannochloropsis gaditana

Overview
Namerna9385
Unique Namerna9385
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1956
Alignment locationKK037253.1:125600..126123 -

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Properties
Property NameValue
Productsmall nuclear ribonucleoprotein e
Orig transcript idgnl|cribi|Naga_100214g4.6235.mrna
Orig protein idgnl|cribi|Naga_100214g4.6235
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:125600..126123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100214g4gene9103Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9385rna9385-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21320.1cds9355Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9385 ID=rna9385|Name=rna9385|organism=Nannochloropsis gaditana|type=mRNA|length=1956bp
TTTTGCATAGGGCCAAGGTCCAAGGATGACAAGCATATGCGAAGAATGCG
AAGAGATGCCGGCCGCGATGCGCTGTGAAGACTGTGACTTGATATACTGC
CTGCCATGCGCCAAACACTTCCACGCGAAGGGGAATCGAGCAAAGCACGT
CCTTGATTTTTTCCCTTCTCAGAACTGTGGCAATCTTGCTCAAGACGACG
GGACTGAGTCAATGTTATCAACGTCATCCTCGCTAACGCGGCGCAGAAGT
GGCAGTGGCGCGTTGCTTGGTCCTCCCCTGCGCCAGACCACGCCCCAGTC
CCAACAGAAACGACGGTCACGCTTACCTCTTGGCATTCCCACAGCGAATA
TAATGGCAGAGAACGCAACAACTCAAACAGCTGTAGTGAAATCAGTGACA
GGGCCTCAATACCCTCAGACTACCGTCCTGGGGGTAAATCAGAACCATAA
TGGAGGAAGCGGCCGACGAAGCAGTACCTTGAAGACACCCACAACCACCG
CGACAGAGAGCCACGCCTGCCGAATGTCAGGTTCCAACCTAGGCCAGGGC
CCCGACTCGTCTATATCCTCGATGAAATGGAGCGCGAGCGATTTTGTTGT
GGGGAGGCCCCTCGGCCGGGGAAAGTTTGGCAACGTCTATCTAGCCAGGG
AATCTCGAACGAGCAAGTCGGTCGCGCTCAAAGTCATCTTCAAGAATTCC
TTGACAGGCGGCAAGTCATTTAATCTTCTGCGTCGGGAGGTCGAGATCCA
AATCCGTCTCCGCCACCCCCACATCCTCCGCCTGTACGGCTACTTCCACG
ACCCCAAGTCTTGCTTTCTGGTGCTGGAGTGGGCCTCGGGGGGGGAGCTC
TACAAGCATCTGAAGGCGCTCCCGGAGAACAGACTGGAAGAAAGCTTGGC
AGCCCAGTACATGCGTCAGGTTGCCCTGGCCGTTCAGTACCTGCACGCCT
GCCACGTGATCCACCGTGACATCAAGCCCGAGAACCTCCTCCTTGCCGGC
GATCTCCCTCCCTCCGCCGCCCCAGCCACAGCCGGTAGCCATGGCCGACG
TTCGAGTGGAAGCACGGGCGTGGGCGTGGCAGGCGTCTTACCCGCGGACC
ATGTCCTCAAACTCTGTGACTTCGGGTGGGCGGTCCATGCACCCCCCCCA
GACCAGCACTGGCGTCAGACCTTATGCGGGACGGCCGAATACCTCTCTCC
CGAAATGGTAGCGGGCAAGCCCTACGACTGCACCGTGGACGTGTGGGCGC
TTGGGATCTTGGCCTACGAGTTGTTGCAAGGGAAGACGCCCTTTTATGTG
CCCGAGGGGGAGAACAGGGGGGCTGTGTCGATGGATAGGGGCGAGGGACG
GGAAGGAGGGGGCGGTGGCAAAGGGGTCGGTGTGGCAGCAGCAGCGGCAG
TGGCAGCAGCTACCGAGGACGGAGATATGAAGAAAGGGCGAGAGGAGGTA
TATGCCCGGATCGCTGCTTATGAGGGTGCATTGACGTTCCCACATCCTGT
CTCGGTGGAGGCGCGCTCCTTTGTCAACGCCTTGCTGGTTCCTGACCCGC
AAGACCGCGTGAGTCTGGACGCGGTCTTGCGGCACCCCTGGCTAATGGAG
GAGGAAGACGTGTAGGAAAGGGGGAGATAGACGGGGAGGGATGACTAGAG
ATGTAAACTAGTAGCAATTTAAACATTTTAACAAAGCAGAAATTCATGCA
AGTATCGCACATCTGTTTGCATGCGAGACCCCCCGAATCTGGCATCTACT
CCTATCCTCACCCAGGTCTCTCGGCTCGGCTCGTCTTCATTCCCTTCACC
CTGACGTCGTGATGACGCCCAGAAACGGATTCAGAGCGCAGGGCTTAGAC
AGGGGAAGGCCTGGTAGGCATGGCTAGCCATGAAGGAGAGGCAGCCGCCT
TGCCGAGGGGACTGTGACGGCGCGTGATAACAGATACCGATAAAAGCAAG
TGTGGC
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protein sequence of rna9385

>rna9385-protein ID=rna9385-protein|Name=rna9385|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLL
PPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQV
WLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDA
ITLIQHAPKD
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mRNA from alignment at KK037253.1:125600..126123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9385 ID=rna9385|Name=rna9385|organism=Nannochloropsis gaditana|type=mRNA|length=524bp|location=Sequence derived from alignment at KK037253.1:125600..126123- (Nannochloropsis gaditana)
ATGCCTGGCTCTGACGCCACTCGCCTCTCTCATTGCAATCTTTGCCATCC
GTCTCACACTGCGCCGTGCGGGAAAATCTCACACTCTGCTCCTACCCTTT
GTGTTGTTGGCACAGGTGTGTGGTCAGGGAGCCACGCGAGAAGCCTCCTG
CCTCCATCGACTGAGGCCCCCTTATTCGGGTCGATTTCATCCTTTCCAAG
GAGCCTCTTTGAGTTGTTCATTTGTTGCACTAGCTTTGCAAACAATATCT
GAGCATCATGAGCAGCAAGGTTAAAAAGGTTATGACCCAGCCGATCTCGG
TGATCTTCAGGATGTTGCAAGGGAAACAACGGCTGCAGGTCTGGCTCTAC
GAGCAGACGAGTGTACGCATGGAGGGGAAGCTGATCGGCTTCGACGAGTA
CATGAACGTGGTGTTGGACGAGGCAGAGGAGGTGGACAGCAAGAAGGGGA
CACGGAAGGCTTTGGGCAGGATTTTATTGAAGGGCGACGCCATCACATTG
ATCCAACACGCCCCAAAGGACTAG
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Coding sequence (CDS) from alignment at KK037253.1:125600..126123-

>rna9385 ID=rna9385|Name=rna9385|organism=Nannochloropsis gaditana|type=CDS|length=966bp|location=Sequence derived from alignment at KK037253.1:125600..126123- (Nannochloropsis gaditana)
CATCATGAGCAGCAAGGTTAAAAAGGTTATGACCCAGCCGATCTCGGTGA
TCTTCAGGATGTTGCAAGGGAAACAACGGCTGCAGGTCTGGCTCTACGAG
CAGACGAGTGTACGCATGGAGGGGAAGCTGATCGGCTTCGACGAGTACAT
GAACGTGGTGTTGGACGAGGCAGAGGAGGTGGACAGCAAGAAGGGGACAC
GGAAGGCTTTGGGCAGGATTTTATTGAAGGGCGACGCCATCACATTGATC
CAACACGCCCCAAAGGACTAGATGCCTGGCTCTGACGCCACTCGCCTCTC
TCATTGCAATCTTTGCCATCCGTCTCACACTGCGCCGTGCGGGAAAATCT
CACACTCTGCTCCTACCCTTTGTGTTGTTGGCACAGGTGTGTGGTCAGGG
AGCCACGCGAGAAGCCTCCTGCCTCCATCGACTGAGGCCCCCTTATTCGG
GTCGATTTCATCCTTTCCAAGGAGCCTCTTTGACATCATGAGCAGCAAGG
TTAAAAAGGTTATGACCCAGCCGATCTCGGTGATCTTCAGGATGTTGCAA
GGGAAACAACGGCTGCAGGTCTGGCTCTACGAGCAGACGAGTGTACGCAT
GGAGGGGAAGCTGATCGGCTTCGACGAGTACATGAACGTGGTGTTGGACG
AGGCAGAGGAGGTGGACAGCAAGAAGGGGACACGGAAGGCTTTGGGCAGG
ATTTTATTGAAGGGCGACGCCATCACATTGATCCAACACGCCCCAAAGGA
CTAGATGCCTGGCTCTGACGCCACTCGCCTCTCTCATTGCAATCTTTGCC
ATCCGTCTCACACTGCGCCGTGCGGGAAAATCTCACACTCTGCTCCTACC
CTTTGTGTTGTTGGCACAGGTGTGTGGTCAGGGAGCCACGCGAGAAGCCT
CCTGCCTCCATCGACTGAGGCCCCCTTATTCGGGTCGATTTCATCCTTTC
CAAGGAGCCTCTTTGA
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Synonyms
Publications