EWM21320.1, cds9355 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|585101503|gb|EWM21320.1| (small nuclear ribonucleoprotein e [Nannochloropsis gaditana]) HSP 1 Score: 332.413 bits (851), Expect = 1.917e-115 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query: 1 MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLLPPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD 160
MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLLPPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD
Sbjct: 1 MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLLPPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD 160
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|545371874|ref|XP_005650459.1| (small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169] >gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 135.961 bits (341), Expect = 8.434e-39 Identity = 59/83 (71.08%), Postives = 76/83 (91.57%), Query Frame = 0
Query: 73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 155
M++KVK++MTQPI++IFR LQ +Q++Q+WLYEQT +R+EG++IGFDEYMN+VLDEAEEV K+ TRKALGRILLKGD ITL+Q
Sbjct: 1 MATKVKRIMTQPINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSMKRKTRKALGRILLKGDNITLMQ 83
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|1191660644|gb|OTG12614.1| (putative small nuclear ribonucleoprotein family protein [Helianthus annuus]) HSP 1 Score: 132.88 bits (333), Expect = 1.283e-37 Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 0
Query: 73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
M++KV+++MTQPI++IFR LQ K R+Q+WL+EQ +R+EG++IGFDEYMN+VLDEAEEV KK TRKALGRILLKGD ITL+ +A K
Sbjct: 1 MATKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKKTRKALGRILLKGDNITLMMNAGK 87
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|848867404|ref|XP_012834353.1| (PREDICTED: small nuclear ribonucleoprotein E-like [Erythranthe guttata]) HSP 1 Score: 131.724 bits (330), Expect = 3.813e-37 Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0
Query: 74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ VR+EG++IGFDEYMN+VLDEAEEV+ KK TRK LGRILLKGD ITL+ + K
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDVRIEGRIIGFDEYMNLVLDEAEEVNVKKNTRKELGRILLKGDNITLMMNTGK 88
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|1004135487|gb|KXZ43545.1| (hypothetical protein GPECTOR_87g407 [Gonium pectorale]) HSP 1 Score: 131.339 bits (329), Expect = 5.859e-37 Identity = 57/83 (68.67%), Postives = 75/83 (90.36%), Query Frame = 0
Query: 73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 155
M++KV+K+MTQPI+++FR LQ KQ++Q+WLY+Q +R+EG++IGFDEYMN+VLD+AEEV K+ TRKALGRILLKGD ITLIQ
Sbjct: 1 MATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDDAEEVSMKRKTRKALGRILLKGDNITLIQ 83
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|645233839|ref|XP_008223535.1| (PREDICTED: small nuclear ribonucleoprotein E [Prunus mume]) HSP 1 Score: 131.339 bits (329), Expect = 6.804e-37 Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0
Query: 74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ +R+EG++IGFDEYMN+VLDEAEEV KK TRKALGRILLKGD ITL+ + K
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKNTRKALGRILLKGDNITLMMNTGK 88
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|552821851|ref|XP_005845956.1| (hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis] >gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis]) HSP 1 Score: 130.183 bits (326), Expect = 1.334e-36 Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 0
Query: 73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHA 157
M KVK++MTQPI++IFR LQ +Q++Q+WLYE +R+EG++IGFDEYMN+VLDEAEEV K+ TRKALGRILLKGD ITL+Q A
Sbjct: 1 MPPKVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRKALGRILLKGDTITLMQAA 85
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|575483850|ref|XP_006681219.1| (hypothetical protein BATDEDRAFT_90820 [Batrachochytrium dendrobatidis JAM81] >gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium dendrobatidis JAM81] >gi|1028563573|gb|OAJ32765.1| small nuclear ribonucleoprotein E [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 130.568 bits (327), Expect = 1.432e-36 Identity = 56/86 (65.12%), Postives = 75/86 (87.21%), Query Frame = 0
Query: 73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAP 158
M++K++K+M QPI++IFRMLQ K R+Q+WLYEQT +R+EG+++GFDE+MN+VLD+AEEV +K G RK LGRILLKGD ITL +AP
Sbjct: 1 MATKLQKIMVQPINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEVSTKTGARKQLGRILLKGDNITLFCNAP 86
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|1012014847|ref|XP_015948775.1| (small nuclear ribonucleoprotein E [Arachis duranensis] >gi|1012014853|ref|XP_015948777.1| small nuclear ribonucleoprotein E [Arachis duranensis] >gi|1012014859|ref|XP_015948778.1| small nuclear ribonucleoprotein E [Arachis duranensis] >gi|1021473780|ref|XP_016200805.1| small nuclear ribonucleoprotein E [Arachis ipaensis] >gi|1021479702|ref|XP_016183048.1| small nuclear ribonucleoprotein E [Arachis ipaensis] >gi|1021479704|ref|XP_016183049.1| small nuclear ribonucleoprotein E [Arachis ipaensis] >gi|1021479706|ref|XP_016183050.1| small nuclear ribonucleoprotein E [Arachis ipaensis]) HSP 1 Score: 129.798 bits (325), Expect = 2.215e-36 Identity = 57/86 (66.28%), Postives = 74/86 (86.05%), Query Frame = 0
Query: 74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
S+KV++VMTQPI++IFR LQ K R+Q+WL+EQ +R+EG++IGFDEYMN+VLD+AEEV+ KK TRK LGRILLKGD ITL+ + K
Sbjct: 3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNTRKTLGRILLKGDNITLMMNTGK 88
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|702484799|ref|XP_010034068.1| (PREDICTED: small nuclear ribonucleoprotein E isoform X2 [Eucalyptus grandis] >gi|702516669|ref|XP_010042040.1| PREDICTED: small nuclear ribonucleoprotein E-like [Eucalyptus grandis]) HSP 1 Score: 129.798 bits (325), Expect = 2.443e-36 Identity = 57/86 (66.28%), Postives = 75/86 (87.21%), Query Frame = 0
Query: 74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
SSKV+++MTQPI++IFR LQ K R+Q+WL+EQ +R+EG++IGFDEYMN+VLD+AEEV+ KK TRK LGRILLKGD ITL+ ++ K
Sbjct: 3 SSKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKTLGRILLKGDNITLMMNSGK 88 The following BLAST results are available for this feature:
BLAST of EWM21320.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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