EWM21320.1, cds9355 (CDS) Nannochloropsis gaditana

Overview
NameEWM21320.1
Unique Namecds9355
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:125912..126123 -
Alignment locationKK037253.1:125600..125870 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21320.1
Productsmall nuclear ribonucleoprotein e
Orig transcript idgnl|cribi|Naga_100214g4.6235.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:125912..126123 -
KK037253.1supercontigKK037253.1:125600..125870 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027078snRNP-E
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|585101503|gb|EWM21320.1| (small nuclear ribonucleoprotein e [Nannochloropsis gaditana])

HSP 1 Score: 332.413 bits (851), Expect = 1.917e-115
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLLPPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD 160
            MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLLPPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD
Sbjct:    1 MPGSDATRLSHCNLCHPSHTAPCGKISHSAPTLCVVGTGVWSGSHARSLLPPSTEAPLFGSISSFPRSLFDIMSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD 160          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|545371874|ref|XP_005650459.1| (small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169] >gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 135.961 bits (341), Expect = 8.434e-39
Identity = 59/83 (71.08%), Postives = 76/83 (91.57%), Query Frame = 0
Query:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 155
            M++KVK++MTQPI++IFR LQ +Q++Q+WLYEQT +R+EG++IGFDEYMN+VLDEAEEV  K+ TRKALGRILLKGD ITL+Q
Sbjct:    1 MATKVKRIMTQPINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSMKRKTRKALGRILLKGDNITLMQ 83          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|1191660644|gb|OTG12614.1| (putative small nuclear ribonucleoprotein family protein [Helianthus annuus])

HSP 1 Score: 132.88 bits (333), Expect = 1.283e-37
Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 0
Query:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
            M++KV+++MTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLDEAEEV  KK TRKALGRILLKGD ITL+ +A K
Sbjct:    1 MATKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKKTRKALGRILLKGDNITLMMNAGK 87          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|848867404|ref|XP_012834353.1| (PREDICTED: small nuclear ribonucleoprotein E-like [Erythranthe guttata])

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-37
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0
Query:   74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
            S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ  VR+EG++IGFDEYMN+VLDEAEEV+ KK TRK LGRILLKGD ITL+ +  K
Sbjct:    3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDVRIEGRIIGFDEYMNLVLDEAEEVNVKKNTRKELGRILLKGDNITLMMNTGK 88          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|1004135487|gb|KXZ43545.1| (hypothetical protein GPECTOR_87g407 [Gonium pectorale])

HSP 1 Score: 131.339 bits (329), Expect = 5.859e-37
Identity = 57/83 (68.67%), Postives = 75/83 (90.36%), Query Frame = 0
Query:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 155
            M++KV+K+MTQPI+++FR LQ KQ++Q+WLY+Q  +R+EG++IGFDEYMN+VLD+AEEV  K+ TRKALGRILLKGD ITLIQ
Sbjct:    1 MATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDDAEEVSMKRKTRKALGRILLKGDNITLIQ 83          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|645233839|ref|XP_008223535.1| (PREDICTED: small nuclear ribonucleoprotein E [Prunus mume])

HSP 1 Score: 131.339 bits (329), Expect = 6.804e-37
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0
Query:   74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
            S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLDEAEEV  KK TRKALGRILLKGD ITL+ +  K
Sbjct:    3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKNTRKALGRILLKGDNITLMMNTGK 88          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|552821851|ref|XP_005845956.1| (hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis] >gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis])

HSP 1 Score: 130.183 bits (326), Expect = 1.334e-36
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 0
Query:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHA 157
            M  KVK++MTQPI++IFR LQ +Q++Q+WLYE   +R+EG++IGFDEYMN+VLDEAEEV  K+ TRKALGRILLKGD ITL+Q A
Sbjct:    1 MPPKVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRKALGRILLKGDTITLMQAA 85          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|575483850|ref|XP_006681219.1| (hypothetical protein BATDEDRAFT_90820 [Batrachochytrium dendrobatidis JAM81] >gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium dendrobatidis JAM81] >gi|1028563573|gb|OAJ32765.1| small nuclear ribonucleoprotein E [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 130.568 bits (327), Expect = 1.432e-36
Identity = 56/86 (65.12%), Postives = 75/86 (87.21%), Query Frame = 0
Query:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAP 158
            M++K++K+M QPI++IFRMLQ K R+Q+WLYEQT +R+EG+++GFDE+MN+VLD+AEEV +K G RK LGRILLKGD ITL  +AP
Sbjct:    1 MATKLQKIMVQPINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEVSTKTGARKQLGRILLKGDNITLFCNAP 86          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|1012014847|ref|XP_015948775.1| (small nuclear ribonucleoprotein E [Arachis duranensis] >gi|1012014853|ref|XP_015948777.1| small nuclear ribonucleoprotein E [Arachis duranensis] >gi|1012014859|ref|XP_015948778.1| small nuclear ribonucleoprotein E [Arachis duranensis] >gi|1021473780|ref|XP_016200805.1| small nuclear ribonucleoprotein E [Arachis ipaensis] >gi|1021479702|ref|XP_016183048.1| small nuclear ribonucleoprotein E [Arachis ipaensis] >gi|1021479704|ref|XP_016183049.1| small nuclear ribonucleoprotein E [Arachis ipaensis] >gi|1021479706|ref|XP_016183050.1| small nuclear ribonucleoprotein E [Arachis ipaensis])

HSP 1 Score: 129.798 bits (325), Expect = 2.215e-36
Identity = 57/86 (66.28%), Postives = 74/86 (86.05%), Query Frame = 0
Query:   74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
            S+KV++VMTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLD+AEEV+ KK TRK LGRILLKGD ITL+ +  K
Sbjct:    3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNTRKTLGRILLKGDNITLMMNTGK 88          
BLAST of EWM21320.1 vs. NCBI_GenBank
Match: gi|702484799|ref|XP_010034068.1| (PREDICTED: small nuclear ribonucleoprotein E isoform X2 [Eucalyptus grandis] >gi|702516669|ref|XP_010042040.1| PREDICTED: small nuclear ribonucleoprotein E-like [Eucalyptus grandis])

HSP 1 Score: 129.798 bits (325), Expect = 2.443e-36
Identity = 57/86 (66.28%), Postives = 75/86 (87.21%), Query Frame = 0
Query:   74 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 159
            SSKV+++MTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLD+AEEV+ KK TRK LGRILLKGD ITL+ ++ K
Sbjct:    3 SSKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKTLGRILLKGDNITLMMNSGK 88          
The following BLAST results are available for this feature:
BLAST of EWM21320.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101503|gb|EWM21320.1|1.917e-115100.00small nuclear ribonucleoprotein e [Nannochloropsis... [more]
gi|545371874|ref|XP_005650459.1|8.434e-3971.08small nuclear ribonucleo protein E [Coccomyxa sube... [more]
gi|1191660644|gb|OTG12614.1|1.283e-3767.82putative small nuclear ribonucleoprotein family pr... [more]
gi|848867404|ref|XP_012834353.1|3.813e-3767.44PREDICTED: small nuclear ribonucleoprotein E-like ... [more]
gi|1004135487|gb|KXZ43545.1|5.859e-3768.67hypothetical protein GPECTOR_87g407 [Gonium pector... [more]
gi|645233839|ref|XP_008223535.1|6.804e-3767.44PREDICTED: small nuclear ribonucleoprotein E [Prun... [more]
gi|552821851|ref|XP_005845956.1|1.334e-3668.24hypothetical protein CHLNCDRAFT_36210 [Chlorella v... [more]
gi|575483850|ref|XP_006681219.1|1.432e-3665.12hypothetical protein BATDEDRAFT_90820 [Batrachochy... [more]
gi|1012014847|ref|XP_015948775.1|2.215e-3666.28small nuclear ribonucleoprotein E [Arachis duranen... [more]
gi|702484799|ref|XP_010034068.1|2.443e-3666.28PREDICTED: small nuclear ribonucleoprotein E isofo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9385rna9385Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications