|
|
Properties
| Property Name | Value |
|---|
| Product | eukaryotic initiation factor 4a-iii |
| Orig transcript id | gnl|cribi|Naga_100214g8.6238.mrna |
| Orig protein id | gnl|cribi|Naga_100214g8.6238 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037253.1 | supercontig | KK037253.1:117852..120395 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9382 ID=rna9382|Name=rna9382|organism=Nannochloropsis gaditana|type=mRNA|length=1585bp
AAGCAACCCCCTCCGAGAACACCCTTTCATGCATTGGGCTCACGGGGATA
TTTTTCGTGTGAGAACATTACGTTTCCACGTTAGATACGGTGTGTCAATC
AAATTCGACAGCAGCGTGTTTCCAGATGTTGTGTCACATCAAGTCTATCT
CTACAAGTTTCTGACGGCAGCTCTTTCCAATGCCCTTTGAACGGATCCAC
GATGATCTCTCACTTACTTTCAAATCTCCATACAATTTGTATCAGCTGCA
CAACAGCTAAGTTACGTCGTGTTTCCACCAAACCCATGCCAAAAGCAGCG
GCTGGTACCCCCAAGGCTATCGCCAATAAAGCCAAAGCCAAGGGCCTACA
ACGCCTGCGATGGTATTGCCAGATGTGCGAGAAGCAATGCCGGGATGAGA
ACGGATTTAAGTGCCATACTATGTCTGAGAGTCACTTGCGGCAAATGCGG
GTGTACGCAGAAAATCCTACACAGGTGATGGAGAAATTCAGCCAGGAGTT
CGAGGAGAGCTACCTGGAGGCCCTGTCGCGTCTCCATGGGACCAAGCGGG
TACCAGCCAATCAAGTCTATCAGGAATTGATATGCAACAAAACGCACATC
CACATGAACGCTACCAAGTGGGATTCCCTGACCACTTTCGTCAAATATCT
GGGCAAGAAGGGCATCTGCCTGGTGGACGAGACGGAGAAAGGCTGGTTCG
TTCAATGGATCGATCGGGAGTATATGTTGAGGAGGGAGGAGTTGGAGAAG
GCGCGCAAGGAAGAGGTGGAGGAGGAGGTTCGTCAGCAACGGTTGATGGC
CGCGCGCGCGGCGGCGGCAGCAGCGGCTGCTGCTGGGAAGGGCGAAGAGA
AGGGGGCAGAGGCAAGTAGAGAGTTGAAAAGGGGAGACGGGGAGAGCAAG
ATTGTGATCGGAGTGCACGGAGACTCTGGAGGAGGGGGAATTAAACGGGC
GCGAGTGAATGTGTTTGAAAGGGAGGAGGAAGACGATGGCCTGGGGATGA
TTAAGAAGAAGGCGGTCGGTGAACAAGGTGGACTAGAGAAAGGAGGAGGG
AAGAAGAGTGAGATGGAGAAGCTTATGGAGCAGGATGCGGCGCGTAAGGC
TGCCGAGGAACGAGCACGCAAGAAGGAGGAAGGAGGGGAAGAGGGAGAGC
GAACAGAGCAGTGGTTGGCGCGCGGTATCGTCGTCAAGATCATCAACAAG
AGGTTGGGGGGTGGGAGGTTCTACAAAAAGAAGGGACGAGTGGAGAAGCT
TCTAGAAGGAGGCTTTGTTGCGGAGCTGTGTCTTCTAGGAGATGGGGAGG
GAGGGCGGGTGCGCATCGATCAGGAGGAGCTGGAGACAGTGATTCCTGCG
CCAGGAGGACAGGTGATTGTGCTGAATGGGCGGGGAAGGGGGAAGGAGGG
GGTGTTGATGGGGCTCGACGAGGAGAGGTACGCTTGCCGCGTGCGACTGC
GAGAGGGGAAAAGGGAGGTGGTGTTAGAGGGCGTGGAGTACGAGGACGTG
TGTAAATTTGACAGGGACTGGCTTCTCGGGGAGGGGAGATGAGAGGTTGG
CGTCGCGAGAAAAGAAAGCTGAGACGACGCTTTGG back to topprotein sequence of rna9382 >rna9382-protein ID=rna9382-protein|Name=rna9382|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MSRKRASGGGRSEEEIQFDATEEVEFTVTKDVAVKPTFEAMGLREELLRG
IYDYGFEKPSAIQQRAVLPIIKGHDVIAQSQSGTGKTAVFSMGILQRLDT
SSNDTQALVLSPTRELAEQTQKVILSLGDYMNVQCHACIGGKSIGEDIRR
LDYGVQVVSGTPGRVFDMIRRRNLKTKSLKMLVIDEADEMLNKGFKEQIY
DIYRYLPPTTQVVLISATLPQEVLDMTKKFMNEPIKVLVKRDELTLEGIK
QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRKKVDWLRNKMVEANF
TVSAMHGDMPQKEREAIMEEFRSGATRVLIATDVWGRGLDVQQVSLVINY
DLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDISILRDIEQYYSTQIDE
MPMSVHDLV back to topmRNA from alignment at KK037253.1:117852..120395- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9382 ID=rna9382|Name=rna9382|organism=Nannochloropsis gaditana|type=mRNA|length=2544bp|location=Sequence derived from alignment at KK037253.1:117852..120395- (Nannochloropsis gaditana)
GTCTTCTACACGAGGGCCACATCGGTGCAAGTTCGAAAAATCATATCTCA
ATCTTCAGATCCTTTCCAGAAACGGTGCTCAGGCGGGAAAGTGAAGGTTT
TCTACTCTAGTGGCTACCCCAATTCTCTCCGACTGTCGCAGACGGTCCTT
CGTTGCGCACGCACCGCGCACTACCTCTGAAATTCGACAAACGAAGTTCA
ATTTTACATCTAACTTCTTTTTCATCCTCTCACCAAAGGCCTAGCTTCTA
TGTCGCGGAAACGAGCCTCAGGAGGCGGTCGATCGGAGGAGGAGATCCAA
TTTGACGCAACAGAGGAGGTCGAGTTCACCGTCACCAAGGATGTAGCTGT
CAAACCCACATTTGAGGCGATGGGCCTACGTGAAGAGCTCCTACGAGGTG
CGTTGGCGTGGAGATACTTTTTGAAAGATTCGGGGTGGGTCGTGTTGGTC
TTAATCATGGGAGGTTCAGGGGATGGAAGAGAAAGGAGATAGAGGTCCGG
TTCTCGGAAAGATACAAAGGAGTGGCATTATGCGGTGTAACGTTGCTCCC
ACGGCAATCTATCACGCATTGCGTGCAGGTATTTTGATGACAAATACCGG
ATGTCTCTGTGTGATTGACAAGAAAGGCACGCACCTGTCCGCCTTGAATC
CTCCTTTCTCCCTTCACCAGGCATCTACGACTACGGTTTCGAAAAGCCGT
CTGCCATCCAACAGCGGGCCGTCTTGCCCATCATCAAAGGCCACGACGTG
ATCGCTCAGTCCCAGTCGGGTACGGGGAAGACCGCGGTCTTCTCCATGGG
CATCCTCCAGCGCCTGGACACAAGCAGCAACGACACGCAGGCCCTGGTCC
TGTCCCCGACCCGGGAATTGGCCGAGCAGACGCAGAAAGTCATCCTATCC
CTGGGTGACTACATGAACGTGCAATGCCACGCCTGCATCGGAGGGAAGAG
CATCGGGGAGGACATCCGCCGCCTGGACTACGGTGTGCAAGTGGTGAGCG
GGACGCCGGGCCGGGTCTTTGACATGATCCGACGGCGGAACTTGAAGACA
AAATCCTTGAAGATGCTTGTGATCGACGAGGCGGACGAGATGCTGAACAA
AGGCTTTAAGGAGCAGATCTATGACATCTACCGGTACCTCCCTCCGACCA
CGCAGGTGGTGCTGATCAGCGCCACCCTGCCCCAGGAGGTACTGGACATG
ACCAAGAAGTTCATGAACGAGCCCATCAAGGTCCTGGTGAAGCGTGACGA
GCTCACGTTGGAGGGCATCAAGCAGTTTTTCGTGGCGGTGGAGAAGGAGG
AGTGGAAGTTCGACACCTTGTGCGATTTGTACGACACACTCACCATCACG
CAGGCCGTAATCTTTTGCAACACCCGGAAGAAGGTGGGCAGGCGGGATAT
TGGGGACGTCCTTCGCACCTTTGTGTGTGCGTTTGATTCTCGCAACACTG
TTTGACGAGAGGGGCTTGGATCTGTCGTTTCAGGCGGTCGGCAAAGCTCA
TTGCCGGGTCCTCATTTCAGACCGGCCTCAGGGCTATTGGTCCGTGCACG
ACAACGCCATGTTCGTGCCTCACGACAAACGCTCCCTGTTCCCTTGTCTT
TGATCCACGGCACAGGTGGACTGGCTGCGCAACAAGATGGTGGAGGCGAA
CTTCACGGTCTCGGCTATGCATGGTGACATGCCGCAGAAAGAGCGCGAGG
CTATCATGGAGGAGTTCCGGTCGGGGGCGACCCGGGTGCTGATCGCCACG
GACGTCTGGGGCCGGGGTCTGGACGTGCAGCAGGTGGGTGGGGGGGCTGG
CTTGATGGCGTGGTCGGGGACTGGGGCGTGTCGTCTCCCGCGCGCCTGGT
CTGTCGTGGGGTCACACATTGAGTGGATGCAGGCGAGCTCCCTGCCCGTG
GCGGGGATGCGGCCTTCGGCATGGACTACCTGCCTTGAGGGTGTCTCTGC
CCTAATTGGGGTCTGGTGTGGGTCGGACAGGGGAGGAGAGAAGGTTTCTA
GGCCCGGGTGCTGGGACTTCTATTCCCACAGTTTTAACTCGAGAACGTCG
CAGGCAGTCGCCGCAACAAGCGCACACGTACTATACTTGACAGTCACGAG
ACGCGCCCATCGTTTAGGCAATACGTCTTTTTGCCTCATTCTTTTTTGTG
CGCTCGCCCCCCTCCTCGGTCCCTGCCACACGGTCGCGTTGACAGGTCTC
GCTCGTCATCAACTACGACCTGCCCAACAACCGGGAGCTCTACATCCATC
GGATCGGCCGGTCTGGGCGCTTTGGGCGGAAGGGCGTGGCGATCAACTTC
GTCAGGAACGACGACATCTCCATCCTGCGCGACATCGAACAGTACTACTC
GACTCAGATCGATGAAATGCCCATGTCCGTCCACGACCTTGTCTGAGAGG
GGGGCTCGAGAGGGAGAGGGGTGTGTCATATGAGGGCGGCGGGGAATTCG
TGTGTGAAAGGAAAGCATGAGTCGATAAAGGGGGGGGTGGAGCGAGACAA
AGAAGAAACGGGGGTCGATAGCGCTGATCCAAAGCGTCGTCTCA back to topCoding sequence (CDS) from alignment at KK037253.1:117852..120395- >rna9382 ID=rna9382|Name=rna9382|organism=Nannochloropsis gaditana|type=CDS|length=4920bp|location=Sequence derived from alignment at KK037253.1:117852..120395- (Nannochloropsis gaditana)
GTCTCGCTCGTCATCAACTACGACCTGCCCAACAACCGGGAGCTCTACAT
CCATCGGATCGGCCGGTCTGGGCGCTTTGGGCGGAAGGGCGTGGCGATCA
ACTTCGTCAGGAACGACGACATCTCCATCCTGCGCGACATCGAACAGTAC
TACTCGACTCAGATCGATGAAATGCCCATGTCCGTCCACGACCTTGTCTG
AGTGGACTGGCTGCGCAACAAGATGGTGGAGGCGAACTTCACGGTCTCGG
CTATGCATGGTGACATGCCGCAGAAAGAGCGCGAGGCTATCATGGAGGAG
TTCCGGTCGGGGGCGACCCGGGTGCTGATCGCCACGGACGTCTGGGGCCG
GGGTCTGGACGTGCAGCAGGCATCTACGACTACGGTTTCGAAAAGCCGTC
TGCCATCCAACAGCGGGCCGTCTTGCCCATCATCAAAGGCCACGACGTGA
TCGCTCAGTCCCAGTCGGGTACGGGGAAGACCGCGGTCTTCTCCATGGGC
ATCCTCCAGCGCCTGGACACAAGCAGCAACGACACGCAGGCCCTGGTCCT
GTCCCCGACCCGGGAATTGGCCGAGCAGACGCAGAAAGTCATCCTATCCC
TGGGTGACTACATGAACGTGCAATGCCACGCCTGCATCGGAGGGAAGAGC
ATCGGGGAGGACATCCGCCGCCTGGACTACGGTGTGCAAGTGGTGAGCGG
GACGCCGGGCCGGGTCTTTGACATGATCCGACGGCGGAACTTGAAGACAA
AATCCTTGAAGATGCTTGTGATCGACGAGGCGGACGAGATGCTGAACAAA
GGCTTTAAGGAGCAGATCTATGACATCTACCGGTACCTCCCTCCGACCAC
GCAGGTGGTGCTGATCAGCGCCACCCTGCCCCAGGAGGTACTGGACATGA
CCAAGAAGTTCATGAACGAGCCCATCAAGGTCCTGGTGAAGCGTGACGAG
CTCACGTTGGAGGGCATCAAGCAGTTTTTCGTGGCGGTGGAGAAGGAGGA
GTGGAAGTTCGACACCTTGTGCGATTTGTACGACACACTCACCATCACGC
AGGCCGTAATCTTTTGCAACACCCGGAAGAAGATGTCGCGGAAACGAGCC
TCAGGAGGCGGTCGATCGGAGGAGGAGATCCAATTTGACGCAACAGAGGA
GGTCGAGTTCACCGTCACCAAGGATGTAGCTGTCAAACCCACATTTGAGG
CGATGGGCCTACGTGAAGAGCTCCTACGAGGTCTCGCTCGTCATCAACTA
CGACCTGCCCAACAACCGGGAGCTCTACATCCATCGGATCGGCCGGTCTG
GGCGCTTTGGGCGGAAGGGCGTGGCGATCAACTTCGTCAGGAACGACGAC
ATCTCCATCCTGCGCGACATCGAACAGTACTACTCGACTCAGATCGATGA
AATGCCCATGTCCGTCCACGACCTTGTCTGAGTGGACTGGCTGCGCAACA
AGATGGTGGAGGCGAACTTCACGGTCTCGGCTATGCATGGTGACATGCCG
CAGAAAGAGCGCGAGGCTATCATGGAGGAGTTCCGGTCGGGGGCGACCCG
GGTGCTGATCGCCACGGACGTCTGGGGCCGGGGTCTGGACGTGCAGCAGG
CATCTACGACTACGGTTTCGAAAAGCCGTCTGCCATCCAACAGCGGGCCG
TCTTGCCCATCATCAAAGGCCACGACGTGATCGCTCAGTCCCAGTCGGGT
ACGGGGAAGACCGCGGTCTTCTCCATGGGCATCCTCCAGCGCCTGGACAC
AAGCAGCAACGACACGCAGGCCCTGGTCCTGTCCCCGACCCGGGAATTGG
CCGAGCAGACGCAGAAAGTCATCCTATCCCTGGGTGACTACATGAACGTG
CAATGCCACGCCTGCATCGGAGGGAAGAGCATCGGGGAGGACATCCGCCG
CCTGGACTACGGTGTGCAAGTGGTGAGCGGGACGCCGGGCCGGGTCTTTG
ACATGATCCGACGGCGGAACTTGAAGACAAAATCCTTGAAGATGCTTGTG
ATCGACGAGGCGGACGAGATGCTGAACAAAGGCTTTAAGGAGCAGATCTA
TGACATCTACCGGTACCTCCCTCCGACCACGCAGGTGGTGCTGATCAGCG
CCACCCTGCCCCAGGAGGTACTGGACATGACCAAGAAGTTCATGAACGAG
CCCATCAAGGTCCTGGTGAAGCGTGACGAGCTCACGTTGGAGGGCATCAA
GCAGTTTTTCGTGGCGGTGGAGAAGGAGGAGTGGAAGTTCGACACCTTGT
GCGATTTGTACGACACACTCACCATCACGCAGGCCGTAATCTTTTGCAAC
ACCCGGAAGAAGATGTCGCGGAAACGAGCCTCAGGAGGCGGTCGATCGGA
GGAGGAGATCCAATTTGACGCAACAGAGGAGGTCGAGTTCACCGTCACCA
AGGATGTAGCTGTCAAACCCACATTTGAGGCGATGGGCCTACGTGAAGAG
CTCCTACGAGGTCTCGCTCGTCATCAACTACGACCTGCCCAACAACCGGG
AGCTCTACATCCATCGGATCGGCCGGTCTGGGCGCTTTGGGCGGAAGGGC
GTGGCGATCAACTTCGTCAGGAACGACGACATCTCCATCCTGCGCGACAT
CGAACAGTACTACTCGACTCAGATCGATGAAATGCCCATGTCCGTCCACG
ACCTTGTCTGAGTGGACTGGCTGCGCAACAAGATGGTGGAGGCGAACTTC
ACGGTCTCGGCTATGCATGGTGACATGCCGCAGAAAGAGCGCGAGGCTAT
CATGGAGGAGTTCCGGTCGGGGGCGACCCGGGTGCTGATCGCCACGGACG
TCTGGGGCCGGGGTCTGGACGTGCAGCAGGCATCTACGACTACGGTTTCG
AAAAGCCGTCTGCCATCCAACAGCGGGCCGTCTTGCCCATCATCAAAGGC
CACGACGTGATCGCTCAGTCCCAGTCGGGTACGGGGAAGACCGCGGTCTT
CTCCATGGGCATCCTCCAGCGCCTGGACACAAGCAGCAACGACACGCAGG
CCCTGGTCCTGTCCCCGACCCGGGAATTGGCCGAGCAGACGCAGAAAGTC
ATCCTATCCCTGGGTGACTACATGAACGTGCAATGCCACGCCTGCATCGG
AGGGAAGAGCATCGGGGAGGACATCCGCCGCCTGGACTACGGTGTGCAAG
TGGTGAGCGGGACGCCGGGCCGGGTCTTTGACATGATCCGACGGCGGAAC
TTGAAGACAAAATCCTTGAAGATGCTTGTGATCGACGAGGCGGACGAGAT
GCTGAACAAAGGCTTTAAGGAGCAGATCTATGACATCTACCGGTACCTCC
CTCCGACCACGCAGGTGGTGCTGATCAGCGCCACCCTGCCCCAGGAGGTA
CTGGACATGACCAAGAAGTTCATGAACGAGCCCATCAAGGTCCTGGTGAA
GCGTGACGAGCTCACGTTGGAGGGCATCAAGCAGTTTTTCGTGGCGGTGG
AGAAGGAGGAGTGGAAGTTCGACACCTTGTGCGATTTGTACGACACACTC
ACCATCACGCAGGCCGTAATCTTTTGCAACACCCGGAAGAAGATGTCGCG
GAAACGAGCCTCAGGAGGCGGTCGATCGGAGGAGGAGATCCAATTTGACG
CAACAGAGGAGGTCGAGTTCACCGTCACCAAGGATGTAGCTGTCAAACCC
ACATTTGAGGCGATGGGCCTACGTGAAGAGCTCCTACGAGGTCTCGCTCG
TCATCAACTACGACCTGCCCAACAACCGGGAGCTCTACATCCATCGGATC
GGCCGGTCTGGGCGCTTTGGGCGGAAGGGCGTGGCGATCAACTTCGTCAG
GAACGACGACATCTCCATCCTGCGCGACATCGAACAGTACTACTCGACTC
AGATCGATGAAATGCCCATGTCCGTCCACGACCTTGTCTGAGTGGACTGG
CTGCGCAACAAGATGGTGGAGGCGAACTTCACGGTCTCGGCTATGCATGG
TGACATGCCGCAGAAAGAGCGCGAGGCTATCATGGAGGAGTTCCGGTCGG
GGGCGACCCGGGTGCTGATCGCCACGGACGTCTGGGGCCGGGGTCTGGAC
GTGCAGCAGGCATCTACGACTACGGTTTCGAAAAGCCGTCTGCCATCCAA
CAGCGGGCCGTCTTGCCCATCATCAAAGGCCACGACGTGATCGCTCAGTC
CCAGTCGGGTACGGGGAAGACCGCGGTCTTCTCCATGGGCATCCTCCAGC
GCCTGGACACAAGCAGCAACGACACGCAGGCCCTGGTCCTGTCCCCGACC
CGGGAATTGGCCGAGCAGACGCAGAAAGTCATCCTATCCCTGGGTGACTA
CATGAACGTGCAATGCCACGCCTGCATCGGAGGGAAGAGCATCGGGGAGG
ACATCCGCCGCCTGGACTACGGTGTGCAAGTGGTGAGCGGGACGCCGGGC
CGGGTCTTTGACATGATCCGACGGCGGAACTTGAAGACAAAATCCTTGAA
GATGCTTGTGATCGACGAGGCGGACGAGATGCTGAACAAAGGCTTTAAGG
AGCAGATCTATGACATCTACCGGTACCTCCCTCCGACCACGCAGGTGGTG
CTGATCAGCGCCACCCTGCCCCAGGAGGTACTGGACATGACCAAGAAGTT
CATGAACGAGCCCATCAAGGTCCTGGTGAAGCGTGACGAGCTCACGTTGG
AGGGCATCAAGCAGTTTTTCGTGGCGGTGGAGAAGGAGGAGTGGAAGTTC
GACACCTTGTGCGATTTGTACGACACACTCACCATCACGCAGGCCGTAAT
CTTTTGCAACACCCGGAAGAAGATGTCGCGGAAACGAGCCTCAGGAGGCG
GTCGATCGGAGGAGGAGATCCAATTTGACGCAACAGAGGAGGTCGAGTTC
ACCGTCACCAAGGATGTAGCTGTCAAACCCACATTTGAGGCGATGGGCCT
ACGTGAAGAGCTCCTACGAG back to top
|